NO04G05160, NO04G05160 (gene) Nannochloropsis oceanica

Overview
NameNO04G05160
Unique NameNO04G05160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1302
Alignment locationchr4:1438116..1439417 +

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Properties
Property NameValue
DescriptionAlba DNA/RNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1438116..1439417 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036882Alba-like_dom_sf
IPR002775DNA/RNA-bd_Alba-like
Homology
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: PSC67986.1 (ribonuclease P subunit p25 [Micractinium conductrix])

HSP 1 Score: 136.3 bits (342), Expect = 2.000e-28
Identity = 69/135 (51.11%), Postives = 95/135 (70.37%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +A  R+      NEVR+T QG  +SY+ Y  +L  E+G  AV LK MG+AI+K +T+AEI+KR + GLHQ T I S+  K+ W P EEGL+R+E+TR++S + ITLSK+  PLD  SLPGYQ PLP ++VR
Sbjct:    3 RYQRVAMPREPEEHADNEVRITSQGKSRSYISYGTSLLTEKGHSAVVLKAMGKAINKTVTIAEIMKRRIVGLHQCTAISSVELKDHWEPKEEGLDRIETTRHVSVITITLSKE--PLD-TSLPGYQPPLPESEVR 134
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: OWM74949.1 (hypothetical protein CDL15_Pgr021300 [Punica granatum])

HSP 1 Score: 131.7 bits (330), Expect = 4.900e-27
Identity = 62/135 (45.93%), Postives = 94/135 (69.63%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS+   + W PLEEGL  +E+TR++S + ITLSK+   LD ++ PGYQ PLP   V+
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSDEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSIDITDTWEPLEEGLVTLETTRHVSMITITLSKN--QLD-KAAPGYQPPLPADQVK 134
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: PON93950.1 (DNA/RNA-binding protein Alba-like [Trema orientalis])

HSP 1 Score: 131.7 bits (330), Expect = 4.900e-27
Identity = 62/135 (45.93%), Postives = 91/135 (67.41%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +   R + P   NE+R+T QG +++Y+ YAM L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS    + W PLEEGL  +E+TR++S +LITLSK+      +SLPGYQ PLP   V+
Sbjct:    3 RYQRVEKPRAETPIDENEIRITSQGRMRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMILITLSKNELN---KSLPGYQPPLPADQVK 134
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: XP_019154559.1 (PREDICTED: keratin, type II cytoskeletal 1-like isoform X1 [Ipomoea nil])

HSP 1 Score: 131.3 bits (329), Expect = 6.500e-27
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVRYPVGGFQRPYSRGGRNGG 193
            +Y+ +   R++ P   NE+R+T QG +++Y+ YA +L +E+GA  +ALK MGRAI+K + +AE++KR + GLHQ T IGS    + W PLEEGL  +E+ R++S + +TLSK+   LD  S PGYQ P+P   V+ PV G+   Y R   N G
Sbjct:    3 RYQKVERPREETPMNENEIRITTQGRLRNYITYATSLLQEKGANEIALKAMGRAINKTVIIAELIKRRIAGLHQNTSIGSTDITDTWEPLEEGLLPLETIRHVSVITVTLSKN--ELDCSS-PGYQPPIPSDQVK-PVVGYD--YERRPTNNG 149
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: XP_019154560.1 (PREDICTED: keratin, type II cytoskeletal 1-like isoform X2 [Ipomoea nil])

HSP 1 Score: 131.3 bits (329), Expect = 6.500e-27
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVRYPVGGFQRPYSRGGRNGG 193
            +Y+ +   R++ P   NE+R+T QG +++Y+ YA +L +E+GA  +ALK MGRAI+K + +AE++KR + GLHQ T IGS    + W PLEEGL  +E+ R++S + +TLSK+   LD  S PGYQ P+P   V+ PV G+   Y R   N G
Sbjct:    3 RYQKVERPREETPMNENEIRITTQGRLRNYITYATSLLQEKGANEIALKAMGRAINKTVIIAELIKRRIAGLHQNTSIGSTDITDTWEPLEEGLLPLETIRHVSVITVTLSKN--ELDCSS-PGYQPPIPSDQVK-PVVGYD--YERRPTNNG 149
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: PUZ71759.1 (hypothetical protein GQ55_2G339900 [Panicum hallii var. hallii])

HSP 1 Score: 129.8 bits (325), Expect = 1.900e-26
Identity = 64/135 (47.41%), Postives = 93/135 (68.89%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +   R+DAP K NE+R+T QG +++Y+ YA AL +++G+  V  K MGRAI+K + +AE++KR + GLHQ T  GS    ++W PLEEGL  +E+TR++S + ITLSK    LD  S+ GYQSPLP   V+
Sbjct:    3 RYQRVEKPREDAPIKENEIRITTQGRMRNYITYATALLQDKGSDEVVFKAMGRAINKTVMIAELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK--KELDTSSV-GYQSPLPADQVK 134
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: XP_002462756.1 (H/ACA ribonucleoprotein complex subunit 1 isoform X1 [Sorghum bicolor] >EER99277.1 hypothetical protein SORBI_3002G281600 [Sorghum bicolor])

HSP 1 Score: 129.4 bits (324), Expect = 2.500e-26
Identity = 63/135 (46.67%), Postives = 94/135 (69.63%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +   R++AP K NE+R+T QG +++Y+ YA AL +++G+  V  K MGRAI+K + +AE++KR + GLHQ T  GS    ++W PLEEGL  +E+TR++S + ITLSK    LD  S+ GYQSPLP  +V+
Sbjct:    3 RYQRVEKPREEAPIKENEIRITTQGRMRNYITYATALLQDKGSDEVVFKAMGRAINKTVMIAELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK--KELDTSSI-GYQSPLPADEVK 134
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: XP_020154176.1 (heterogeneous nuclear ribonucleoproteins A1 homolog isoform X1 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 129.4 bits (324), Expect = 2.500e-26
Identity = 61/135 (45.19%), Postives = 93/135 (68.89%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +   R++ P + NE+R+T  G +++Y+GY M+L EE G   + +K MGRAI+K + VAE++KR + GLHQ T I S+   + W PLEEGL  +E+TR++S + +TLSK+  PLD  S PGYQ P+P  +V+
Sbjct:    3 RYQRVEKPRNETPIRENEIRITALGRMRNYIGYGMSLLEENGHDEITIKAMGRAINKTVMVAELIKRRVAGLHQNTSIESVGITDTWEPLEEGLVPLETTRHVSMITLTLSKE--PLDTSS-PGYQPPIPAEEVK 134
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: XP_020154185.1 (TATA-binding protein-associated factor 2N-like isoform X3 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 129.4 bits (324), Expect = 2.500e-26
Identity = 61/135 (45.19%), Postives = 93/135 (68.89%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +   R++ P + NE+R+T  G +++Y+GY M+L EE G   + +K MGRAI+K + VAE++KR + GLHQ T I S+   + W PLEEGL  +E+TR++S + +TLSK+  PLD  S PGYQ P+P  +V+
Sbjct:    3 RYQRVEKPRNETPIRENEIRITALGRMRNYIGYGMSLLEENGHDEITIKAMGRAINKTVMVAELIKRRVAGLHQNTSIESVGITDTWEPLEEGLVPLETTRHVSMITLTLSKE--PLDTSS-PGYQPPIPAEEVK 134
[Close]
BLAST of NO04G05160 vs. NCBI_GenBank
Match: XP_020154180.1 (protein FAM98B-like isoform X2 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 129.4 bits (324), Expect = 2.500e-26
Identity = 61/135 (45.19%), Postives = 93/135 (68.89%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTDVR 175
            +Y+ +   R++ P + NE+R+T  G +++Y+GY M+L EE G   + +K MGRAI+K + VAE++KR + GLHQ T I S+   + W PLEEGL  +E+TR++S + +TLSK+  PLD  S PGYQ P+P  +V+
Sbjct:    3 RYQRVEKPRNETPIRENEIRITALGRMRNYIGYGMSLLEENGHDEITIKAMGRAINKTVMVAELIKRRVAGLHQNTSIESVGITDTWEPLEEGLVPLETTRHVSMITLTLSKE--PLDTSS-PGYQPPIPAEEVK 134
The following BLAST results are available for this feature:
BLAST of NO04G05160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PSC67986.12.000e-2851.11ribonuclease P subunit p25 [Micractinium conductri... [more]
OWM74949.14.900e-2745.93hypothetical protein CDL15_Pgr021300 [Punica grana... [more]
PON93950.14.900e-2745.93DNA/RNA-binding protein Alba-like [Trema orientali... [more]
XP_019154559.16.500e-2744.44PREDICTED: keratin, type II cytoskeletal 1-like is... [more]
XP_019154560.16.500e-2744.44PREDICTED: keratin, type II cytoskeletal 1-like is... [more]
PUZ71759.11.900e-2647.41hypothetical protein GQ55_2G339900 [Panicum hallii... [more]
XP_002462756.12.500e-2646.67H/ACA ribonucleoprotein complex subunit 1 isoform ... [more]
XP_020154176.12.500e-2645.19heterogeneous nuclear ribonucleoproteins A1 homolo... [more]
XP_020154185.12.500e-2645.19TATA-binding protein-associated factor 2N-like iso... [more]
XP_020154180.12.500e-2645.19protein FAM98B-like isoform X2 [Aegilops tauschii ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007592NSK007592Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05160.1NO04G05160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628402gene_2304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05160.1NO04G05160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05160 ID=NO04G05160|Name=NO04G05160|organism=Nannochloropsis oceanica|type=gene|length=1302bp
ATGGAGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCTCCGGTCAGAG
CGACAACTTTGGCGCCGCCGGTGTCCAGGTCTCTATCTCCGCCCCTGCCC
CACAACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCATCGGGATGAT
GCACCTGCCAAGACCAACGAAGTACGCGTCACCTACCAAGGACCAGTTAA
GAGTTACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGCGGTGCCCGGG
CCGTGGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGCCTTGACGGTT
GCCGAAATTTTGAAACGCAGCTTGCCTGGACTCCATCAACGCACTGAAAT
TGGATCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAGGAAGGCTTGA
ATCGCGTCGAGTCGACGCGTTACATTTCTTCAGTCCTGATAACGCTATCG
AAAGATCCTCCTCCCCTCGACATTCGCAGTCTTCCGGGATATCAGTCGCC
TTTGCCTCTAACAGATGTGCGATACCCTGTGGGGGGGTTCCAGCGTCCGT
ACTCTCGAGGCGGACGGAATGGCGGCGGGAGGGGGAGGGGAGGGCGGGAT
GGAAGAGGGAGGGGTATGGGTGGGGGAAGGAGAGGAGGCAGAGAAGGAAG
AAGAAGGGGAGAAGTAAAGGAGGGAAGGGAAGGAGAGTTCGGATATCACG
CATCTCCATACCCCCCACCGCCGCATGAGCAGCAGTACCACCAACAGCTC
CTGGAGCAGTACTTCCAGTCGCTGCAGATTTCACAGTACCAGCAACTTCA
TCACCACCACCAGCAGCAACAGCAGCAACAGCAGCAATATCAGCACCAGC
AACCGCAATCTGCAGCAGCATCACCGCCACCACCGCCAATGCACATGGCT
GCTCCTGTTGTAGTTGCTGCGGGGGCTGCAGAAGGGAGTGGTGGAATGGG
GGCGGGACTCAGGGACATGGTGGGGGTGAGAGAGATCAGAGGAGACGAGG
TGTCGTATTATGAGCAGTTTTATCACCAGACGCAGCAACAAATACCGCCG
CCGCAACCACCGCAACCACCACCACCACAGGCAGTGCATGAAAGGATGAT
AAAGCCGGGTGAGAGAGGGGGAATGAGGGATCTCAGAGGAGGTGGAGGAG
GGAGAAGAGGGAGAGGTGGGCATCGTAGTTCTAACCGACGATGACGAGAT
ATAACGTCCATTGCACGTGTATATATATCGATAGATATGGATATTACTGA
CGATAGACGTCCATTGCGCTGACGGAGGAAAGGAATGGGAGATGCTGACA
TC
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protein sequence of NO04G05160.1

>NO04G05160.1-protein ID=NO04G05160.1-protein|Name=NO04G05160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MELPCDKQQFSVPSGQSDNFGAAGVQVSISAPAPQRYRSKYRLLACHRDD
APAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTV
AEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLS
KDPPPLDIRSLPGYQSPLPLTDVRYPVGGFQRPYSRGGRNGGGRGRGGRD
GRGRGMGGGRRGGREGRRRGEVKEGREGEFGYHASPYPPPPHEQQYHQQL
LEQYFQSLQISQYQQLHHHHQQQQQQQQQYQHQQPQSAAASPPPPPMHMA
APVVVAAGAAEGSGGMGAGLRDMVGVREIRGDEVSYYEQFYHQTQQQIPP
PQPPQPPPPQAVHERMIKPGERGGMRDLRGGGGGRRGRGGHRSSNRR*
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Synonyms
Publications