NO04G05130, NO04G05130 (gene) Nannochloropsis oceanica

Overview
NameNO04G05130
Unique NameNO04G05130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2383
Alignment locationchr4:1430337..1432719 +

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Properties
Property NameValue
DescriptionEribonuclease p
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1430337..1432719 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005182DUF304
Homology
BLAST of NO04G05130 vs. NCBI_GenBank
Match: EWM28923.1 (eribonuclease p [Nannochloropsis gaditana])

HSP 1 Score: 352.4 bits (903), Expect = 1.000e-93
Identity = 191/230 (83.04%), Postives = 209/230 (90.87%), Query Frame = 0
Query:    1 MRVLPLISLFSLSSAFLLPTLPSSTSPLSSTRGRALASSASEELSRKEKSKEQVRSLLKGLGELDDGEN-SESTGSKRKEKREGLEAARRALSDKDSMKLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKAKTAVLPELK 230
            MR+L  +S  SLSSAFLLP+LPSS+SPLS  RGRALASSASEELSRKEKSKEQVRSLLKGLGELDD +  SES  SKRKEKREG++AARRAL+DKD MKLEPE VFFEG PHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRR+SVTSGVGGKDLTEVIYADIER+NYVFR+FGTTGDMVLFLRDGAK+E+RS+PNFR+VY YIR  LD+DA+ +T  LPE K
Sbjct:    1 MRLLHFLSFVSLSSAFLLPSLPSSSSPLSK-RGRALASSASEELSRKEKSKEQVRSLLKGLGELDDEDGPSESGSSKRKEKREGVDAARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK 229          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: XP_005854023.1 (ribonuclease p [Nannochloropsis gaditana CCMP526] >EKU22333.1 ribonuclease p [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 194.5 bits (493), Expect = 3.600e-46
Identity = 100/143 (69.93%), Postives = 110/143 (76.92%), Query Frame = 0
Query:   87 ARRALSDKDSMKLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKAKTAVLPELK 230
            ARRAL+DKD MKLEPE VFFEG PHWSEVVVPAISILTVIGIIPFASSVARQIW                       VIYADIER+NYVFR+FGTTGDMVLFLRDGAK+E+RS+PNFR+VY YIR  LD+DA+ +T  LPE K
Sbjct:   13 ARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIW-----------------------VIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK 132          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: CBJ32509.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 158.3 bits (399), Expect = 2.900e-35
Identity = 76/132 (57.58%), Postives = 99/132 (75.00%), Query Frame = 0
Query:   94 KDSMKLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKAKTAVL 226
            K+ +KLE EV FFEG P  SEVV PA+SILTVIGI+PF++++ARQ WVKY +TSRR+ + SG  GKD TEV+Y DI  + YV+R FG  GD+VL LRDG+K+E+RS+P+F   Y YIR+      + K+AVL
Sbjct:  105 KEKVKLEAEVTFFEGGPDPSEVVAPAVSILTVIGIVPFSAALARQAWVKYTLTSRRIKIVSGWNGKDTTEVVYPDIVDMVYVWRFFGRCGDLVLTLRDGSKLEIRSLPDFERNYNYIRERTSASCQEKSAVL 236          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: XP_009042833.1 (hypothetical protein AURANDRAFT_35230, partial [Aureococcus anophagefferens] >EGB02468.1 hypothetical protein AURANDRAFT_35230, partial [Aureococcus anophagefferens])

HSP 1 Score: 156.0 bits (393), Expect = 1.400e-34
Identity = 69/122 (56.56%), Postives = 95/122 (77.87%), Query Frame = 0
Query:  102 EVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKAKTA 224
            E +FFEGPP  +E+V+PAISI+T+IG++PF ++ ARQ+WVKYKITSRR+SV SG+GG D TE+IY+DI  + YV+R     GDMV+ LRDGAK+EMR +P F+++Y YI  +  E+ +A  A
Sbjct:    1 ETLFFEGPPSITELVLPAISIITIIGVVPFLAAAARQVWVKYKITSRRISVQSGLGGNDFTEIIYSDIVDLKYVYRGSKEVGDMVIELRDGAKLEMRHVPKFQDIYKYIYSLCSEECQATAA 122          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: OSX68632.1 (hypothetical protein BU14_2468s0001 [Porphyra umbilicalis])

HSP 1 Score: 153.3 bits (386), Expect = 9.200e-34
Identity = 69/130 (53.08%), Postives = 95/130 (73.08%), Query Frame = 0
Query:   99 LEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKAKTAVLPEL 229
            LEPE VF+EG P W EVV+P ++ILTV+G+IP+A +VARQ+WVKYK T+RR++V SG  G D TEV+Y DIE V +V R  G   DMVL L+DGA++E+RS+  F E+Y Y+   +DED +  +   P++
Sbjct:   37 LEPEEVFYEGKPSWVEVVIPTVAILTVVGVIPWAGAVARQLWVKYKFTNRRIAVDSGFRGNDHTEVVYRDIEEVRFVRRFGGAAADMVLLLKDGARLELRSLDRFDELYEYVMGQVDEDTRQASNYTPKV 166          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: XP_009034100.1 (hypothetical protein AURANDRAFT_16832, partial [Aureococcus anophagefferens] >EGB11764.1 hypothetical protein AURANDRAFT_16832, partial [Aureococcus anophagefferens])

HSP 1 Score: 149.8 bits (377), Expect = 1.000e-32
Identity = 66/109 (60.55%), Postives = 89/109 (81.65%), Query Frame = 0
Query:  102 EVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYI 211
            E +FFEGPP  +E+V+PAISI+T+IG++PF ++ ARQ+WVKYKITSRR+SV SG+GG D TE+IY+DI  + YV+R     GDMV+ LRDGAK+EMR +P F+++Y YI
Sbjct:    1 ETLFFEGPPSITELVLPAISIITIIGVVPFLAAAARQVWVKYKITSRRISVQSGLGGNDFTEIIYSDIVDLKYVYRGSKEVGDMVIELRDGAKLEMRHVPKFQDIYKYI 109          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: EJK46898.1 (hypothetical protein THAOC_34412 [Thalassiosira oceanica])

HSP 1 Score: 145.6 bits (366), Expect = 1.900e-31
Identity = 75/144 (52.08%), Postives = 99/144 (68.75%), Query Frame = 0
Query:   74 GSKRKEKREGLEAARRALSDKDSMKLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDED 218
            G+ ++ KR+G      A + K +  L PE  F+EGPP  +E + P ISILTV+GIIP AS+ ARQ WV+Y IT+RR+ VTSG+GGKD+ E++Y D+  +  V R FG  GDMV FLRDGAK EMR++PNF E   +I   +DED
Sbjct:   75 GAAKRGKRKGGGKTETAPA-KAAATLAPEETFYEGPPAITETIAPTISILTVVGIIPAASAWARQAWVRYNITNRRIRVTSGIGGKDMAEIVYPDVVEIRTVKRLFG-DGDMVFFLRDGAKFEMRNVPNFEETMDFILGNVDED 216          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: XP_002183277.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC44977.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 143.7 bits (361), Expect = 7.300e-31
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 0
Query:   94 KDSMKLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKA 221
            K    L PE V++EGPP  +E +VP ISILTV+GIIP A++ ARQ WV+YKITSRR+ VTSG+GGKD+ E++Y DI  +    R FG  GDMV FLRDGAK EMR+IP F     +I D +D +  A
Sbjct:    5 KPKTTLAPEEVYYEGPPAITETIVPTISILTVVGIIPAAAAWARQAWVRYKITSRRIRVTSGIGGKDMAEIVYPDIVELRTAKRLFG-DGDMVAFLRDGAKFEMRNIPEFETAMEFILDQVDPEVAA 130          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: CEL93264.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 142.1 bits (357), Expect = 2.100e-30
Identity = 66/117 (56.41%), Postives = 89/117 (76.07%), Query Frame = 0
Query:   98 KLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGT--TGDMVLFLRDGAKVEMRSIPNFREVYTYIRD 213
            +LE E  F    P W+EVV+PAIS+LTV+GIIPFA +VARQIWVKY+ TSRR+ VTSG+GG D TEVIY +I+ +  V R FG    GD+ + L+DG+K+E+RS+PNF EV  ++++
Sbjct:  150 RLEAETAFMTTKPSWTEVVIPAISVLTVLGIIPFAGAVARQIWVKYEFTSRRIRVTSGIGGNDETEVIYPEIDSITSVRRGFGVADVGDLNILLKDGSKLEIRSVPNFTEVLKFVQE 266          
BLAST of NO04G05130 vs. NCBI_GenBank
Match: XP_005536587.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM80551.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 140.2 bits (352), Expect = 8.000e-30
Identity = 66/147 (44.90%), Postives = 104/147 (70.75%), Query Frame = 0
Query:   76 KRKEKREGLEAARRALSDKDSMKLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKAKT 223
            ++K   E  EA R+  S      LEPE  F++GPP W+E+++P +SILTVIG+IPFA+++ARQ WV+Y+I++R + V +G  G+D TEV+Y DIE V YV R  G + D V+ L+ GA++E+R++P+F + YT+I   + E+A+ ++
Sbjct:   47 RKKSVDEEEEAIRKPSS------LEPEQTFYDGPPSWTELLLPGLSILTVIGVIPFAAALARQYWVRYRISNRSIYVRAGFMGRDETEVVYRDIEEVRYVRRFGGISADYVILLKGGARLELRAVPDFDKTYTFIMQRVSEEARKRS 187          
The following BLAST results are available for this feature:
BLAST of NO04G05130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28923.11.000e-9383.04eribonuclease p [Nannochloropsis gaditana][more]
XP_005854023.13.600e-4669.93ribonuclease p [Nannochloropsis gaditana CCMP526] ... [more]
CBJ32509.12.900e-3557.58conserved unknown protein [Ectocarpus siliculosus][more]
XP_009042833.11.400e-3456.56hypothetical protein AURANDRAFT_35230, partial [Au... [more]
OSX68632.19.200e-3453.08hypothetical protein BU14_2468s0001 [Porphyra umbi... [more]
XP_009034100.11.000e-3260.55hypothetical protein AURANDRAFT_16832, partial [Au... [more]
EJK46898.11.900e-3152.08hypothetical protein THAOC_34412 [Thalassiosira oc... [more]
XP_002183277.17.300e-3155.91predicted protein, partial [Phaeodactylum tricornu... [more]
CEL93264.12.100e-3056.41unnamed protein product [Vitrella brassicaformis C... [more]
XP_005536587.18.000e-3044.90hypothetical protein, conserved [Cyanidioschyzon m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007598NSK007598Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05130.1NO04G05130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579853gene_2300Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100142g1gene1688Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05130.1NO04G05130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05130 ID=NO04G05130|Name=NO04G05130|organism=Nannochloropsis oceanica|type=gene|length=2383bp
AGGCGCGCATTTCGCTTTCCGTCCCTCAAGGAGACCCTCACTAGCCATCC
CACGGGATGTCATCATTTCCTTTCACCGCACCCACATGACCCATCGGAGA
AGAGGCAGCAATGGGCATGGGCCAGCTCGGCACGAAGCCTCTCCTCTTCC
TCTCCTTGCCTTCCTTATTTCTTTACTGTGAACCCTTGGGAAGGGCTTAT
TGTGGCGTAAGTCGAAGCAGGCAGACGCTTTACCGTGCAGAGTATCATAC
CATTGTGGGTTTGGTGCTTAGGTCTCATGCATTTGAACCGTCTCGAGGCC
TGTGCAGCACTGACACATGACATGCATGGAGAGTCCTTTTTAATCGCCAC
CTCAACAGACAGACCGATCCCGAAATCCACGCACGCTTCTTCTGCTTGTC
CAACCCGGGTTACGTACGGCCTTGATGCGCTACGCTCTCCCTTAAACCAC
GCATACATACAGGTTTCTCACTCTCAATGCCAATGTGCACACCTAAGCAC
GTGTGTAGGGCGTGGCCATGCTGGCAAAAGGAAAGACGTAGGCACGCAGT
GCCAAAACGCACGTCATCATCAGATCTGCCTCCCTTTCCTTCCGCTTCTG
TTTCGGCGCATGCACCACATGCACGTCCACTTAGCCCACTTTGACCCTCA
TTCTCTCTTCTACAATCACGTATCACATAGCCGGGGCAATCATGCGTGTC
TTGCCGCTCATTTCGCTCTTCTCCTTGTCGAGCGCCTTCCTACTCCCCAC
CCTTCCTTCCTCCACCTCGCCCCTCTCTTCCACCCGCGGCCGTGCTCTGG
CCTCTTCCGCCTCTGAAGAGCTGTCACGCAAGGAGAAGAGCAAGGAGCAA
GTGCGATCTCTTTTGAAAGGCCTAGGCGAGCTGGATGATGGCGAGAACTC
CGAGAGCACGGGCAGCAAACGCAAGgtacgtgtgtcgtccctcgcctttt
tttgggggcctttcggcatcatgatctactttgtttttcttctcacccgt
ctgccagtgctccatgctgtatattcatctatgagcaacacgatctcgat
caatattttccccttggccaatctgtctcccctaccattccctccttcct
ccccaccctacgtgaagGAGAAACGCGAGGGCTTGGAGGCCGCCCGCCGT
GCACTAAGCGATAAGGACAGCATGAAACTCGAGCCGGAGGTCGTCTTCTT
TGAGGGACCCCCGCATTGGAGTGAGgtaggttgaagaaatcaggagggag
ggaaggtgggaaggagggtggctgaaattttggggtatgggcggacacga
gagtgcaaacggatgtggcttttgatgtacaaaaagaaatggcttttgtt
accgcactagcacatattttatcaccacgtttgctaactccctccttttc
ttctttcctccctccctccttcctcctcgctccctgctcctcggtcctcc
ccagGTGGTTGTGCCGGCCATCTCCATCCTGACCGTAATTGGCATCATTC
CCTTCGCCTCCTCTGTCGCCCGACAGATCTGGgtatggagggagagaaga
agggagggaaggagggagatagagggcgatgagtttatcgggaggcagcg
tgaagaaatggaggaggaaggaaggagggagggagggagggaggaaggga
gggaggggggtctgttaagtgttagaacggtgcaatagaaccagctgctg
atgccaaacgattcatgcctgacattcccataccttccttccctccctcc
ctcgtttccttgcccctcaccctttctctcgaccccagGTGAAGTATAAG
ATCACCTCTCGCCGGGTATCGGTGACCAGCGGCGTGGGTGGGAAGGACTT
GACGGAGgtggggagggagggcgggagaggaggagaagaggagggaggga
gggggacggggctctccaattgtgctcttcaccgcttcttcttctccgtc
tctcacttaaataaataaacaaccaccaaacccacccctcctcccctccc
tcgtgtccagGTCATCTACGCCGACATCGAACGCGTCAACTACGTCTTCC
GCTCTTTCGGCACTACTGGCGATATGGTCCTCTTTCTAAGGGATGGCGCC
AAGGTCGAGATGCGgtacgtgccctccctccctccctccctccctccctc
cttgtccctcgtgcacgcgtgagaggcagcatctcacgtctccctccctc
cctccctccctccctccctcctctagCTCCATTCCCAATTTCCGCGAGGT
CTACACTTACATCCGGGATATGCTGGACGAGGACGCCAAGGCGAAAACCG
CCGTCCTTCCCGAGCTAAAATAACACCACCATCCACGTGTGTAAGGAAAC
AAATAACAGATGAACTTGGGGGGGCAGGGGGAG
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protein sequence of NO04G05130.1

>NO04G05130.1-protein ID=NO04G05130.1-protein|Name=NO04G05130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MRVLPLISLFSLSSAFLLPTLPSSTSPLSSTRGRALASSASEELSRKEKS
KEQVRSLLKGLGELDDGENSESTGSKRKEKREGLEAARRALSDKDSMKLE
PEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRV
SVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSI
PNFREVYTYIRDMLDEDAKAKTAVLPELK*
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Synonyms
Publications