NO04G05130.1, NO04G05130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05130.1
Unique NameNO04G05130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1441
Alignment locationchr4:1430337..1432719 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1430337..1432719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05130.1 vs.
Match: EWM28923.1 (eribonuclease p [Nannochloropsis gaditana])

HSP 1 Score: 352.4 bits (903), Expect = 1.000e-93
Identity = 191/230 (83.04%), Postives = 209/230 (90.87%), Query Frame = 0 
Query:    1 MRVLPLISLFSLSSAFLLPTLPSSTSPLSSTRGRALASSASEELSRKEKSKEQVRSLLKGLGELDDGEN-SESTGSKRKEKREGLEAARRALSDKDSMKLEPEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRVSVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDAKAKTAVLPELK 230
            MR+L  +S  SLSSAFLLP+LPSS+SPLS  RGRALASSASEELSRKEKSKEQVRSLLKGLGELDD +  SES  SKRKEKREG++AARRAL+DKD MKLEPE VFFEG PHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRR+SVTSGVGGKDLTEVIYADIER+NYVFR+FGTTGDMVLFLRDGAK+E+RS+PNFR+VY YIR  LD+DA+ +T  LPE K
Sbjct:    1 MRLLHFLSFVSLSSAFLLPSLPSSSSPLSK-RGRALASSASEELSRKEKSKEQVRSLLKGLGELDDEDGPSESGSSKRKEKREGVDAARRALADKDKMKLEPESVFFEGAPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRISVTSGVGGKDLTEVIYADIERINYVFRAFGTTGDMVLFLRDGAKLEIRSLPNFRDVYNYIRSQLDDDAREQTPALPEPK 229
The following BLAST results are available for this feature:
BLAST of NO04G05130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28923.11.000e-9383.04eribonuclease p [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05130NO04G05130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05130.1NO04G05130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05130.1.cds1NO04G05130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05130.1.cds2NO04G05130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05130.1.cds3NO04G05130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05130.1.cds4NO04G05130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05130.1.cds5NO04G05130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05130.1.cds6NO04G05130.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05130.1 ID=NO04G05130.1|Name=NO04G05130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
AGGCGCGCATTTCGCTTTCCGTCCCTCAAGGAGACCCTCACTAGCCATCC
CACGGGATGTCATCATTTCCTTTCACCGCACCCACATGACCCATCGGAGA
AGAGGCAGCAATGGGCATGGGCCAGCTCGGCACGAAGCCTCTCCTCTTCC
TCTCCTTGCCTTCCTTATTTCTTTACTGTGAACCCTTGGGAAGGGCTTAT
TGTGGCGTAAGTCGAAGCAGGCAGACGCTTTACCGTGCAGAGTATCATAC
CATTGTGGGTTTGGTGCTTAGGTCTCATGCATTTGAACCGTCTCGAGGCC
TGTGCAGCACTGACACATGACATGCATGGAGAGTCCTTTTTAATCGCCAC
CTCAACAGACAGACCGATCCCGAAATCCACGCACGCTTCTTCTGCTTGTC
CAACCCGGGTTACGTACGGCCTTGATGCGCTACGCTCTCCCTTAAACCAC
GCATACATACAGGTTTCTCACTCTCAATGCCAATGTGCACACCTAAGCAC
GTGTGTAGGGCGTGGCCATGCTGGCAAAAGGAAAGACGTAGGCACGCAGT
GCCAAAACGCACGTCATCATCAGATCTGCCTCCCTTTCCTTCCGCTTCTG
TTTCGGCGCATGCACCACATGCACGTCCACTTAGCCCACTTTGACCCTCA
TTCTCTCTTCTACAATCACGTATCACATAGCCGGGGCAATCATGCGTGTC
TTGCCGCTCATTTCGCTCTTCTCCTTGTCGAGCGCCTTCCTACTCCCCAC
CCTTCCTTCCTCCACCTCGCCCCTCTCTTCCACCCGCGGCCGTGCTCTGG
CCTCTTCCGCCTCTGAAGAGCTGTCACGCAAGGAGAAGAGCAAGGAGCAA
GTGCGATCTCTTTTGAAAGGCCTAGGCGAGCTGGATGATGGCGAGAACTC
CGAGAGCACGGGCAGCAAACGCAAGGAGAAACGCGAGGGCTTGGAGGCCG
CCCGCCGTGCACTAAGCGATAAGGACAGCATGAAACTCGAGCCGGAGGTC
GTCTTCTTTGAGGGACCCCCGCATTGGAGTGAGGTGGTTGTGCCGGCCAT
CTCCATCCTGACCGTAATTGGCATCATTCCCTTCGCCTCCTCTGTCGCCC
GACAGATCTGGGTGAAGTATAAGATCACCTCTCGCCGGGTATCGGTGACC
AGCGGCGTGGGTGGGAAGGACTTGACGGAGGTCATCTACGCCGACATCGA
ACGCGTCAACTACGTCTTCCGCTCTTTCGGCACTACTGGCGATATGGTCC
TCTTTCTAAGGGATGGCGCCAAGGTCGAGATGCGCTCCATTCCCAATTTC
CGCGAGGTCTACACTTACATCCGGGATATGCTGGACGAGGACGCCAAGGC
GAAAACCGCCGTCCTTCCCGAGCTAAAATAACACCACCATCCACGTGTGT
AAGGAAACAAATAACAGATGAACTTGGGGGGGCAGGGGGAG
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protein sequence of NO04G05130.1

>NO04G05130.1-protein ID=NO04G05130.1-protein|Name=NO04G05130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MRVLPLISLFSLSSAFLLPTLPSSTSPLSSTRGRALASSASEELSRKEKS
KEQVRSLLKGLGELDDGENSESTGSKRKEKREGLEAARRALSDKDSMKLE
PEVVFFEGPPHWSEVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRV
SVTSGVGGKDLTEVIYADIERVNYVFRSFGTTGDMVLFLRDGAKVEMRSI
PNFREVYTYIRDMLDEDAKAKTAVLPELK*
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mRNA from alignment at chr4:1430337..1432719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05130.1 ID=NO04G05130.1|Name=NO04G05130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at chr4:1430337..1432719+ (Nannochloropsis oceanica)
AGGCGCGCATTTCGCTTTCCGTCCCTCAAGGAGACCCTCACTAGCCATCC
CACGGGATGTCATCATTTCCTTTCACCGCACCCACATGACCCATCGGAGA
AGAGGCAGCAATGGGCATGGGCCAGCTCGGCACGAAGCCTCTCCTCTTCC
TCTCCTTGCCTTCCTTATTTCTTTACTGTGAACCCTTGGGAAGGGCTTAT
TGTGGCGTAAGTCGAAGCAGGCAGACGCTTTACCGTGCAGAGTATCATAC
CATTGTGGGTTTGGTGCTTAGGTCTCATGCATTTGAACCGTCTCGAGGCC
TGTGCAGCACTGACACATGACATGCATGGAGAGTCCTTTTTAATCGCCAC
CTCAACAGACAGACCGATCCCGAAATCCACGCACGCTTCTTCTGCTTGTC
CAACCCGGGTTACGTACGGCCTTGATGCGCTACGCTCTCCCTTAAACCAC
GCATACATACAGGTTTCTCACTCTCAATGCCAATGTGCACACCTAAGCAC
GTGTGTAGGGCGTGGCCATGCTGGCAAAAGGAAAGACGTAGGCACGCAGT
GCCAAAACGCACGTCATCATCAGATCTGCCTCCCTTTCCTTCCGCTTCTG
TTTCGGCGCATGCACCACATGCACGTCCACTTAGCCCACTTTGACCCTCA
TTCTCTCTTCTACAATCACGTATCACATAGCCGGGGCAATCATGCGTGTC
TTGCCGCTCATTTCGCTCTTCTCCTTGTCGAGCGCCTTCCTACTCCCCAC
CCTTCCTTCCTCCACCTCGCCCCTCTCTTCCACCCGCGGCCGTGCTCTGG
CCTCTTCCGCCTCTGAAGAGCTGTCACGCAAGGAGAAGAGCAAGGAGCAA
GTGCGATCTCTTTTGAAAGGCCTAGGCGAGCTGGATGATGGCGAGAACTC
CGAGAGCACGGGCAGCAAACGCAAGGTACGTGTGTCGTCCCTCGCCTTTT
TTTGGGGGCCTTTCGGCATCATGATCTACTTTGTTTTTCTTCTCACCCGT
CTGCCAGTGCTCCATGCTGTATATTCATCTATGAGCAACACGATCTCGAT
CAATATTTTCCCCTTGGCCAATCTGTCTCCCCTACCATTCCCTCCTTCCT
CCCCACCCTACGTGAAGGAGAAACGCGAGGGCTTGGAGGCCGCCCGCCGT
GCACTAAGCGATAAGGACAGCATGAAACTCGAGCCGGAGGTCGTCTTCTT
TGAGGGACCCCCGCATTGGAGTGAGGTAGGTTGAAGAAATCAGGAGGGAG
GGAAGGTGGGAAGGAGGGTGGCTGAAATTTTGGGGTATGGGCGGACACGA
GAGTGCAAACGGATGTGGCTTTTGATGTACAAAAAGAAATGGCTTTTGTT
ACCGCACTAGCACATATTTTATCACCACGTTTGCTAACTCCCTCCTTTTC
TTCTTTCCTCCCTCCCTCCTTCCTCCTCGCTCCCTGCTCCTCGGTCCTCC
CCAGGTGGTTGTGCCGGCCATCTCCATCCTGACCGTAATTGGCATCATTC
CCTTCGCCTCCTCTGTCGCCCGACAGATCTGGGTATGGAGGGAGAGAAGA
AGGGAGGGAAGGAGGGAGATAGAGGGCGATGAGTTTATCGGGAGGCAGCG
TGAAGAAATGGAGGAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGAAGGGA
GGGAGGGGGGTCTGTTAAGTGTTAGAACGGTGCAATAGAACCAGCTGCTG
ATGCCAAACGATTCATGCCTGACATTCCCATACCTTCCTTCCCTCCCTCC
CTCGTTTCCTTGCCCCTCACCCTTTCTCTCGACCCCAGGTGAAGTATAAG
ATCACCTCTCGCCGGGTATCGGTGACCAGCGGCGTGGGTGGGAAGGACTT
GACGGAGGTGGGGAGGGAGGGCGGGAGAGGAGGAGAAGAGGAGGGAGGGA
GGGGGACGGGGCTCTCCAATTGTGCTCTTCACCGCTTCTTCTTCTCCGTC
TCTCACTTAAATAAATAAACAACCACCAAACCCACCCCTCCTCCCCTCCC
TCGTGTCCAGGTCATCTACGCCGACATCGAACGCGTCAACTACGTCTTCC
GCTCTTTCGGCACTACTGGCGATATGGTCCTCTTTCTAAGGGATGGCGCC
AAGGTCGAGATGCGGTACGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CTTGTCCCTCGTGCACGCGTGAGAGGCAGCATCTCACGTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTCTAGCTCCATTCCCAATTTCCGCGAGGT
CTACACTTACATCCGGGATATGCTGGACGAGGACGCCAAGGCGAAAACCG
CCGTCCTTCCCGAGCTAAAATAACACCACCATCCACGTGTGTAAGGAAAC
AAATAACAGATGAACTTGGGGGGGCAGGGGGAG
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Coding sequence (CDS) from alignment at chr4:1430337..1432719+

>NO04G05130.1 ID=NO04G05130.1|Name=NO04G05130.1|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr4:1430337..1432719+ (Nannochloropsis oceanica)
ATGCGTGTCTTGCCGCTCATTTCGCTCTTCTCCTTGTCGAGCGCCTTCCT
ACTCCCCACCCTTCCTTCCTCCACCTCGCCCCTCTCTTCCACCCGCGGCC
GTGCTCTGGCCTCTTCCGCCTCTGAAGAGCTGTCACGCAAGGAGAAGAGC
AAGGAGCAAGTGCGATCTCTTTTGAAAGGCCTAGGCGAGCTGGATGATGG
CGAGAACTCCGAGAGCACGGGCAGCAAACGCAAGGAGAAACGCGAGGGCT
TGGAGGCCGCCCGCCGTGCACTAAGCGATAAGGACAGCATGAAACTCGAG
CCGGAGGTCGTCTTCTTTGAGGGACCCCCGCATTGGAGTGAGGTGGTTGT
GCCGGCCATCTCCATCCTGACCGTAATTGGCATCATTCCCTTCGCCTCCT
CTGTCGCCCGACAGATCTGGGTGAAGTATAAGATCACCTCTCGCCGGGTA
TCGGTGACCAGCGGCGTGGGTGGGAAGGACTTGACGGAGGTCATCTACGC
CGACATCGAACGCGTCAACTACGTCTTCCGCTCTTTCGGCACTACTGGCG
ATATGGTCCTCTTTCTAAGGGATGGCGCCAAGGTCGAGATGCGCTCCATT
CCCAATTTCCGCGAGGTCTACACTTACATCCGGGATATGCTGGACGAGGA
CGCCAAGGCGAAAACCGCCGTCCTTCCCGAGCTAAAATAA
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Synonyms
Publications