NO04G04930, NO04G04930 (gene) Nannochloropsis oceanica

Overview
NameNO04G04930
Unique NameNO04G04930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4504
Alignment locationchr4:1362466..1366969 -

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Properties
Property NameValue
DescriptionProtease-associated domain, PA
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1362466..1366969 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003137Protease-assoc_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
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BLAST of NO04G04930 vs. NCBI_GenBank
Match: EWM28884.1 (Protease-associated domain, PA [Nannochloropsis gaditana])

HSP 1 Score: 960.3 bits (2481), Expect = 6.000e-276
Identity = 577/1165 (49.53%), Postives = 711/1165 (61.03%), Query Frame = 0 
Query:    9 PTTATMEASQLLQHPSSAALVA-----RRPSTLLPLLL----SFLLSFTSLTQHKAFTLAAAADVVLPPPDATTPVPLGGTTTEHGLHPLRKYLPTTMGNEESENEEVTAQRVEAAGPAQKGRDVWPPYRNMPAIALQTTGGKTWKFSPNDGTESVLFVLVERSLKYLPTFEWEEEMTGLSPWSSRPNLTMVFVPRTDPLDAYQVAQEAHTALSSNTDDAEYWLPRMHFSLDTMDSLRSSGSWFTDYVAAWSVPAPSVAVLVDLKPNGTE---QSLLDLFDATPPTSGLAMLAPGAPGACGDGIVGATCGKVAFFGTACLEKDRDNRPVPPQPVQDVEGKVALVARGGCTFSEKVKVLKSSGAVAAIIYSDDKQRSPWLAT-EDGGEGVV---VKPETFPLVLIDREPGQVLRGMTMDTTLVDKLAVTIFERSSPPWAFAADRFGRFRRLVRGYGSLAAAVLEATSFEFESLVAQTNPPAADLGLNPTTLTVDVLEGGGXXXXXXXXXXVEKKSATEAVVEIPSYITERPNGGLHLKINLMCPDREEENCPRWASFIKIYACEVPLEXXXXXXXXXXXXXXXXLSGEDGDMTPATVATAAAATGGILKPDIYRQRAQTDAPPPIDTSGGNRNI----TPSLTTHPTSTVATDAAGTTPPTSRPSIPAQQPRDALPHDV--------GAEGRADNDWDPRVWQGCGGEVVELGRLVSPAGREMLTLVEASPFLAALPLKGTYRRGGGSGAYHPYTPKIKVFVLGAEGYNVSLSFLFTAANPGDLVPFKTFRVSSLQEWGKGGQQGSSPSQS--------IPLPRGVPSYALVAAITAQGSPSGSDIPSTSHMFRIQEDAPATEADAPPSLPPPPLEWTVPLIFQSQPFGCSNLTLTRSGVVPNQLGDWYSSQPGFCPGQPVALKQFFMSRAPSSGRGGITVTYIINDVGNEESEKGRNVGGGGNPPLGAPGHVDLEAYLVTYAFLPETPEVSAVAFVNASV-LPPSLAPXXXXXXXXXXXXXXXVTTQNGHTTLTLRLPGPPVQDGQDAVISFPPPFLDPNMARMPVDLYRVSLSERISGNTLVYTFPVSAPADLSTTATTDPPVARAPVNSQAVQVQVLNSSAAFPS---------QEQENNGAGGMGDNALPSIPPLAPTEGSG 1128
            PTT T+     +QH     L+A          + PL+L    S+  S T L    A T   A+  V  PP  T       TT   G    RK+LP    N  +  +   + ++E A         W P+R +P +AL+TT   TW+F P D ++SVLFV VE SLK+  TF WEE  TGLSPWSSRP+L MVFVP T+  DA  + +EA TAL++   DAE+WLPRMHFSLDT+DSLR   SWF D V AWS+PA +V VL +      +    + L LFDATPP SGLA   PG  G CGD I G TCG +AFFG+ACL +      VPP PVQDVEGKVALVARGGC+F+EKV+V+K +GA+AAIIYSD+  R+ WLAT E+GGE  V   + PE+FPL LID+ PGQ LR   +D+     ++V +FER+S PWAFAAD  G FRRLVRG  SLAAA+LEAT FE+E+LVA++NPPAA+LGL  TT+TV V++G              +  A E  VEIPSY+TERPN GLHL+++LMCP R EENCP  +SF+K+YACE                    L G  G           A       PD+   +AQ  APPPIDTSGG+ N+      SL T P+ +                                      G+ G+     D RVW+GC GEVVELGRLV+PAGREMLT+VEASPFLAALPLKG YRRGG S  Y P+ P +KVFVLGA+GYNVSLS LFTAA+PGDLVPF+TFR+ +        +QG S S +        + LP+GVPSY+LVA+ITA+G P GSD+PS +H F++QE AP+  + +P   PP PL W VPL+ QSQPFGCSNLTLTR+GV+PNQLGDWYSSQPGFCPG  VALKQF ++R  +   G I V Y+    G E   +GR   G      G  G VDLEAY+VTYAFLP TP+VS+V FVN S   PPS  P               V++Q G TTLTLRLPGP   D QDA I FP P  D +  RMP+DLYRV+LSER+SG+T VYTFPV+AP DL  T+  + PV+ AP NSQAVQV+V N++AA P+           +E  GA G+       +P  + TEG G
Sbjct:   12 PTTGTL---LRMQHKVLRPLLAXXXXXXXXXXVFPLVLAQQPSYADSRTKLPS-GARTAPEASPAVASPPFLTP-----STTAAPGFQVFRKFLPP---NTSTWRDGRLSGQIEEA---------WMPFRPLPPLALRTTRDTTWQFLPQDSSKSVLFVPVEHSLKFFRTFRWEETFTGLSPWSSRPDLEMVFVPMTESTDAAALVREAETALAAIPRDAEFWLPRMHFSLDTVDSLREKHSWFADCVDAWSMPATTVGVLWNPSERAGQAETATSLSLFDATPPISGLATPGPGVLGGCGDEIAGGTCGHLAFFGSACLVQGGAGLAVPPLPVQDVEGKVALVARGGCSFAEKVRVVKGAGAIAAIIYSDEHPRTAWLATEEEGGEAKVPSMITPESFPLALIDQAPGQWLRDTLVDSQGGRNMSVALFERTSAPWAFAADGTGHFRRLVRGDASLAAAILEATKFEYEALVAKSNPPAAELGLGATTVTVPVMKG-----EQTVGEKATRMLAKE--VEIPSYVTERPNSGLHLRVHLMCPARAEENCPSLSSFVKLYACEA--------SGGTGPSHRRVLDGAPGSEEENGARGRLALRPEGFAPDV--GKAQDVAPPPIDTSGGDGNVGHVRASSLPTSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSHGKGQ---DARVWEGCAGEVVELGRLVAPAGREMLTVVEASPFLAALPLKGDYRRGGKSEEYSPHRPVVKVFVLGADGYNVSLSLLFTAASPGDLVPFQTFRIDTSDPGTTQTRQGDSQSTAASNSNFKIVSLPKGVPSYSLVASITAEGIPPGSDLPSAAHTFQVQELAPSLTSSSP---PPSPLTWDVPLLLQSQPFGCSNLTLTRAGVIPNQLGDWYSSQPGFCPGSSVALKQFAVTRPTAPEEGEIKVVYL---QGRESPRQGRG-DGEALSASGGEGLVDLEAYVVTYAFLPPTPQVSSVHFVNVSTPFPPSTDPPLPPKASSPTLNEASVSSQAGRTTLTLRLPGPSFADSQDAHILFPSPTADTSQIRMPIDLYRVTLSERVSGDTFVYTFPVAAPPDLGVTSEGEVPVSVAPPNSQAVQVEVANTTAAIPTLPTEVEGGKDVEERGGARGL-QGGRRRLPVGSQTEGQG 1127
The following BLAST results are available for this feature:
BLAST of NO04G04930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28884.16.000e-27649.53Protease-associated domain, PA [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009276NSK009276Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04930.1NO04G04930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660286gene_2285Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100269g3gene1722Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04930.1NO04G04930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04930 ID=NO04G04930|Name=NO04G04930|organism=Nannochloropsis oceanica|type=gene|length=4504bp
TGTAAGTTTGATGGTAGGCACAGAGTAAGAAGAGGATGGAACTACACGCT
TTAGGAGGGTGGGGTTGTTTTGCTAGCTGCAAGACGTGACAAGGAGGACA
GGAAGGGAAGGAGGAGACCCAACGGGGAGGTCGAGACTCCCGGAGGAATA
GGAGCAGCGGGCAACGTTTAAACAATGTCTTGTCTGTAGGGGGTGAATTC
AAAATGCAATATCACACACATATACAGATACATATACCGCGGAATAAGGC
CTCCCTTGACAGTGGAGGTCGTCATCCCTTCGCTCCCTTTTTTACAACGC
TCTGGCGAGTGTAGACGCCCCGAGACGACAGGCTGGGGATATGCAAGCGG
CACGACAGTACTTGCCCTATGACCACCATATCCCACAGTCTGTGCGTGGA
AGGAGCGGCACATTTAGCGTCTCACCACAGCAGGCGCATGGCAGATGATG
GTGTGCGTGGTTGTCGTTTCATCTTGGCCGTCTTCAACTTCTTCCTCGAT
CGCCGCCAACACCCGCGCACCAACACATGTCCTCGTCGACGGGGTACCTC
ACGCACTCCACATTCACACCCCACCTTTCCACATTCCATCAAAGCCACAT
ATATCTGGCAGGTTTATAGACTGGCCTGCCACAACGGCTGACCTCCGAGA
TGAGAAGACGAAGAACAGCCTCCCCAACCACTGCTACCATGGAGGCCTCA
CAACTACTACAACACCCGTCATCGGCAGCACTGGTGGCACGACGCCCCTC
CACCCTGCTCCCCCTCCTCCTCAGTTTCCTCCTCTCCTTTACCAGTCTCA
CCCAGCACAAAGCCTTCACCCTTGCGGCCGCGGCTGATGTCGTCCTCCCT
CCTCCTGACGCTACGACCCCCGTCCCCCTTGGCGGCACTACAACCGAACA
CGGCCTCCATCCCCTCCGTAAATATCTCCCTACCACCATGGGTAATGAAG
AGAGCGAGAACGAAGAAGTGACTGCTCAAAGGGTGGAGGCGGCGGGCCCG
GCACAGAAGGGGAGGGATGTCTGGCCTCCTTACCGCAACATGCCCGCTAT
TGCACTTCAAACCACGGGGGGGAAAACATGGAAATTCTCCCCGAATGACG
GCACAGAGTCAGTGTTATTTGTGCTGGTGGAGCGTTCTTTGAAGTACTTG
CCGACGTTCGAGTGGGAGGAGGAAATGACGGGTCTCAGCCCGTGGTCGAG
TCGTCCTAACTTGACTATGGTGTTTGTGCCCAGGACTGATCCTCTAGACG
CTTACCAAGTCGCACAAGAAGCACATACCGCGCTCTCGTCCAACACGGAT
GACGCCGAGTACTGGCTTCCACGCATGCATTTCTCCTTGGACACGATGGA
TAGCCTTCGGAGCAGTGGCTCCTGGTTTACGGACTATGTTGCCGCCTGGT
CCGTCCCTGCCCCGTCTGTTGCCGTCCTCGTCGACCTAAAACCAAACGGG
ACCGAACAAAGCCTTCTCGACCTCTTTGACGCCACCCCTCCCACCTCCGG
ACTTGCCATGCTTGCGCCGGGAGCACCGGGGGCGTGTGGCGATGGTATCG
TGGGAGCAACATGCGGGAAAGTGGCTTTCTTTGGAACCGCGTGCTTGGAG
AAGGACAGGGATAATCGACCAGTGCCCCCTCAACCGGTGCAAGACGTGGA
GGGGAAAGTAGCTTTGGTTGCCCGGGGAGGTTGCACGTTTTCGGAGAAGG
TAAAGGTGCTCAAGTCCTCTGGGGCGGTGGCAGCTATAATTTATAGTGAC
GACAAGCAGCGTTCGCCCTGGCTGGCCACCGAGGACGGGGGGGAGGGAGT
GGTGGTGAAACCCGAGACGTTTCCTTTGGTCTTGATCGACCGGGAGCCGG
GGCAGGTATTGAGAGGGATGACAATGGACACCACCTTGGTGGACAAGCTG
GCCGTTACCATATTTGAACGCTCGAGCCCGCCATGGGCGTTTGCGGCCGA
TCGTTTCGGCCGTTTCCGACGCCTGGTACGAGGGTACGGCTCCCTTGCTG
CTGCGGTTTTAGAAGCGACGAGTTTTGAATTTGAAAGCCTCGTGGCACAG
ACTAACCCTCCCGCGGCTGATCTTGGCCTGAACCCCACTACTTTGACGGT
GGACGTGCTGGAGGGAGGGGGAGGGGGGGAGGGAGGTCGGGCGGGGGAAT
CCGTGGAGAAGAAGAGTGCGACGGAGGCTGTGGTGGAGATTCCGTCTTAC
ATCACAGAGAGGCCCAATGGTGGGTTGCATCTTAAGATTAACTTGATGTG
CCCGGATCGGGAAGAAGAGAATTGCCCGAGGTGGGCAAGCTTTATCAAGA
TTTATGCCTGCGAGGTCCCGCTGGAGGAAGAGGAGGAAAGCGGTCACCAC
CACCGCCACCATCACTTTCGTCATTTGTCCGGAGAGGATGGTGATATGAC
GCCTGCTACTGTTGCTACTGCTGCTGCGGCTACAGGGGGCATATTGAAGC
CGGACATCTATAGACAGCGAGCGCAAACCGACGCCCCTCCCCCAATCGAC
ACCAGCGGTGGCAATCGCAATATCACCCCCTCCCTTACCACCCATCCCAC
GTCTACAGTCGCTACAGACGCTGCTGGTACTACTCCCCCTACCTCTCGTC
CTTCTATTCCTGCCCAACAGCCTCGCGACGCCCTCCCCCACGACGTAGGG
GCTGAAGGCAGGGCGGATAACGATTGGGACCCTCGTGTGTGGCAAGGGTG
CGGTGGAGAAGTAGTAGAGTTAGGGAGGCTCGTCTCACCAGCAGGGAGGG
AGATGCTCACTTTGGTGGAGGCCTCTCCGTTCCTTGCGGCATTACCTTTA
AAGGGGACGTACCGACGAGGAGGGGGGAGTGGCGCCTACCACCCATACAC
GCCGAAGATTAAGGTGTTTGTGTTAGGGGCGGAGGGGTACAACGTGTCCC
TGTCCTTTCTGTTCACGGCGGCAAACCCTGGCGACTTGGTGCCCTTTAAG
ACCTTTCGGGTGTCGAGTTTGCAGGAATGGGGGAAGGGAGGGCAGCAGGG
AAGTTCGCCCTCTCAATCGATTCCGCTGCCGAGAGGAGTGCCTTCTTACG
CGCTCGTTGCCGCTATCACTGCTCAGGGCTCGCCAAGCGGTAGTGACATC
CCCTCCACCTCCCACATGTTCCGCATTCAAGAAGACGCTCCTGCGACCGA
GGCCGACGCCCCTCCGTCCCTTCCTCCCCCGCCCCTCGAATGGACCGTCC
CCCTCATTTTTCAATCCCAGCCTTTCGGCTGTTCGAATCTCACCCTGACC
CGGTCCGGTGTTGTGCCTAATCAATTGGGCGACTGGTACAGTTCACAGCC
GGGGTTCTGTCCAGGGCAGCCGGTGGCCCTCAAACAATTTTTCATGTCTC
GTGCCCCTTCATCGGGCCGGGGGGGGATTACAGTGACATACATCATTAAT
GACGTTGGCAATGAGGAGTCGGAGAAGGGGAGAAACGTGGGGGGGGGAGG
AAACCCACCATTAGGGGCACCAGGGCATGTGGACCTGGAGGCTTACCTTG
TGACGTATGCGTTTTTACCGGAGACGCCGGAGGTATCGGCCGTGGCGTTC
GTAAATGCCTCCGTCCTCCCCCCCTCCCTCGCCCCTCCCTCTCCCTCGGT
CTCTTCCTCGTCGTCCTCGGTGGGTAGCAGTGTAACGACACAAAATGGGC
ATACCACACTCACTTTGCGCTTGCCGGGGCCACCGGTGCAGGACGGGCAG
GACGCCGTCATCTCCTTCCCTCCCCCCTTTCTTGATCCCAACATGGCGCG
CATGCCAGTCGACCTCTACCGAGTCTCCCTCTCTGAACGTATCTCAGGCA
ACACCCTCGTCTACACCTTTCCTGTCTCGGCCCCTGCAGACCTCAGCACC
ACAGCTACCACCGATCCCCCTGTTGCTCGTGCTCCAGTAAATAGCCAAGC
CGTTCAGGTTCAAGTTTTGAACAGCTCGGCCGCTTTTCCGTCACAAGAGC
AAGAAAATAACGGAGCAGGAGGGATGGGGGATAATGCTCTTCCCTCTATT
CCTCCCCTGGCCCCTACCGAAGGCAGCGGAGGCCACCGGCGGGTCCAAGC
GACCACGACACCCCCGCCGTCCCTCTCTTCCTCCCTCCCTCCCTCCATGC
AGCTGGTGCTTCAGAACTTGGTCGTTCGCACGGATTATCTCGTCAAGATC
TCGGCCGTGTCCTCTGCCGGTCCTAGTCGTGCCTCTGTCCTGACCGTGAA
TGTTCCCGGCACCTCATCCTCCCCCCCTTCCTCCCCCTCCCCCTCCTCCT
CCCGACGGCGGAGACGCCGGCATCATGACATGAAGGCAGGGCAGCAAGAG
GAAGGGGAGGAAGAGTGGGAGAGCTCGGGCATGGGAGCGGGCGAGATGGC
GGGCGTGATCGTAGGAGTACTCGGAGCGGTGGCCTTGGTTAGCATGTTGG
GAATGTGGGTGTGGAGGGGCACGGCGCGCAATCGATTTTTTTCACTCGGG
GAGGAAGGGGGAAGGACGGAAGGGGGAAGGACGGAAGGGGGGGGGGGGTG
GTGA
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protein sequence of NO04G04930.1

>NO04G04930.1-protein ID=NO04G04930.1-protein|Name=NO04G04930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1285bp
MRRRRTASPTTATMEASQLLQHPSSAALVARRPSTLLPLLLSFLLSFTSL
TQHKAFTLAAAADVVLPPPDATTPVPLGGTTTEHGLHPLRKYLPTTMGNE
ESENEEVTAQRVEAAGPAQKGRDVWPPYRNMPAIALQTTGGKTWKFSPND
GTESVLFVLVERSLKYLPTFEWEEEMTGLSPWSSRPNLTMVFVPRTDPLD
AYQVAQEAHTALSSNTDDAEYWLPRMHFSLDTMDSLRSSGSWFTDYVAAW
SVPAPSVAVLVDLKPNGTEQSLLDLFDATPPTSGLAMLAPGAPGACGDGI
VGATCGKVAFFGTACLEKDRDNRPVPPQPVQDVEGKVALVARGGCTFSEK
VKVLKSSGAVAAIIYSDDKQRSPWLATEDGGEGVVVKPETFPLVLIDREP
GQVLRGMTMDTTLVDKLAVTIFERSSPPWAFAADRFGRFRRLVRGYGSLA
AAVLEATSFEFESLVAQTNPPAADLGLNPTTLTVDVLEGGGGGEGGRAGE
SVEKKSATEAVVEIPSYITERPNGGLHLKINLMCPDREEENCPRWASFIK
IYACEVPLEEEEESGHHHRHHHFRHLSGEDGDMTPATVATAAAATGGILK
PDIYRQRAQTDAPPPIDTSGGNRNITPSLTTHPTSTVATDAAGTTPPTSR
PSIPAQQPRDALPHDVGAEGRADNDWDPRVWQGCGGEVVELGRLVSPAGR
EMLTLVEASPFLAALPLKGTYRRGGGSGAYHPYTPKIKVFVLGAEGYNVS
LSFLFTAANPGDLVPFKTFRVSSLQEWGKGGQQGSSPSQSIPLPRGVPSY
ALVAAITAQGSPSGSDIPSTSHMFRIQEDAPATEADAPPSLPPPPLEWTV
PLIFQSQPFGCSNLTLTRSGVVPNQLGDWYSSQPGFCPGQPVALKQFFMS
RAPSSGRGGITVTYIINDVGNEESEKGRNVGGGGNPPLGAPGHVDLEAYL
VTYAFLPETPEVSAVAFVNASVLPPSLAPPSPSVSSSSSSVGSSVTTQNG
HTTLTLRLPGPPVQDGQDAVISFPPPFLDPNMARMPVDLYRVSLSERISG
NTLVYTFPVSAPADLSTTATTDPPVARAPVNSQAVQVQVLNSSAAFPSQE
QENNGAGGMGDNALPSIPPLAPTEGSGGHRRVQATTTPPPSLSSSLPPSM
QLVLQNLVVRTDYLVKISAVSSAGPSRASVLTVNVPGTSSSPPSSPSPSS
SRRRRRRHHDMKAGQQEEGEEEWESSGMGAGEMAGVIVGVLGAVALVSML
GMWVWRGTARNRFFSLGEEGGRTEGGRTEGGGGW*
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Synonyms
Publications