NO04G04870, NO04G04870 (gene) Nannochloropsis oceanica

Overview
NameNO04G04870
Unique NameNO04G04870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1863
Alignment locationchr4:1333252..1335114 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1333252..1335114 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO04G04870 vs. NCBI_GenBank
Match: EWM28879.1 (hypothetical protein Naga_100095g4 [Nannochloropsis gaditana])

HSP 1 Score: 632.9 bits (1631), Expect = 1.100e-177
Identity = 346/645 (53.64%), Postives = 435/645 (67.44%), Query Frame = 0 
Query:    1 MAPHVRGTPTRVRPALLHFTFVVLAVFFAFPALSVPLLQTFKGAQDFPPALTYALVMAGAAAWALASFTASSAWLSLGLAISLAGGLHYLSTLGLVRAAVVVPATFPLVLAGSISAPALTSFDPIFILGLLAGMGFQGFQHLQETARVEVFALVTVGFVTLLTSPGLIGYTASRALSPLSTYAFQLSGAALVLILAFVQPSLPSSFISGLTLALLLARYLSKPPEFTEAARQNARASHWLFAAFLATLSIILTFEVNEQYNPAGLTAFTFILLGTGVAVLSTSCLAATARVWGPVRSGEHQMVTLDFLALCAYFIMPLLYVTYLGLQQLLPSLSSSPLLI---SAPGVDWVLHLLQPLQRPLQLLQLSYPLAPALLLGWMVVVTQEAFEESSILWAHWLIGTYSLGTLDTKHVALVARLEALLESVPNEGGREGEEYLP----------------------ALLKEAGLPVLNIFVSPSVAISHGDLCAALSKEGHVLGLETAAGPFAFPPSVMKEVSTGAAALKKAQASGGGKGEVDWYLGTQGYRNPWALWKASTMNMRFVAPGHRVVLGDNAGVALCRLLDPWCKGGVVMVEVGARG----VHLLATLKDLREQAERGGYVVDSLSAVCPEVQPMVLPVEGG 617
            M  H+RGTP  VRP +L    VV AVF   P L VPLL+  KG   FP  L  ALV+ GAAAWA+ASFT+++ WL+L LA++LA GL Y+S LGLV+  +++PAT PL +AG +S P L SFD I +LG++ G+G QG   +Q+ A +E F L T+  + LL SPG+IG+TASR LSPL T  F L    L  +  F+QPSLP+ FI GLTL L LA  LS  P  T AAR NAR SHWL AA L TL ++++   ++ +  A L A+T I+ GTGVAV STS LA+TARVWGPVRSGE QMVTLDF+AL AYF +PLLYV YLGLQQLL +  S P  I     P + W+   LQP       L LS+PL PA LL WMVV TQ+AFEESSILWAHWL+ TY+LG LDT+ VAL+  L+ LL   P+  G   +E  P                      ALL    +P LNIFV+P +A ++  LC +L + GH LG+ETAAGPFA P +VM  VS G  A+K+A  +GG +G++  Y+G+ G+RNPWALW+A ++ +RF+AP HRVVLGDNAG+ LC LL+PWC+GG+V VEVGA+G    VHL ATL DL+E+AE GGYV+ +LS VCP V+PMVLP E G
Sbjct:    1 MTRHIRGTPLNVRPGILRIALVVTAVFLVLPTLCVPLLRELKGMDGFPSTLRVALVLGGAAAWAIASFTSATVWLTLSLAVTLASGLSYMSILGLVQPTLIMPATAPLFVAGLMSVPVLASFDVILLLGVMGGLGSQGVHRVQDGAHIETFVLGTLAVLCLLASPGVIGHTASRVLSPLHTNIFTLPIPVLAAVYPFLQPSLPNFFIGGLTLTLCLAMCLSDAPAATVAARDNARGSHWLLAALLTTLCLLISLTPDDSHALAALNAYTLIMTGTGVAVASTSFLASTARVWGPVRSGEFQMVTLDFVALAAYFALPLLYVLYLGLQQLLHAPLSLPFAIPPGRLPDLAWLPKWLQP-------LGLSHPLGPATLLTWMVVSTQDAFEESSILWAHWLVETYTLGRLDTRLVALLVSLQDLLRHAPSAAGASEDEVPPGTMATSNAGAKQIEDTRPQGLEALLARTEMPRLNIFVTPGLAAAYPTLCTSLVRHGHYLGVETAAGPFASPWTVMDTVSRGVRAVKQALVAGGTRGDLAGYMGSDGHRNPWALWRAKSLQLRFIAPVHRVVLGDNAGLRLCELLNPWCQGGLVKVEVGAQGSSGYVHLAATLLDLKERAEEGGYVISALSEVCPVVKPMVLPAEQG 638
The following BLAST results are available for this feature:
BLAST of NO04G04870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28879.11.100e-17753.64hypothetical protein Naga_100095g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009285NSK009285Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04870.1NO04G04870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298657gene_2277Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100095g4gene1726Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04870.1NO04G04870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04870 ID=NO04G04870|Name=NO04G04870|organism=Nannochloropsis oceanica|type=gene|length=1863bp
ATGGCCCCGCATGTGCGTGGGACACCTACCCGTGTTCGGCCTGCCCTTCT
CCACTTCACCTTCGTAGTCCTAGCTGTCTTCTTCGCCTTCCCGGCCCTGA
GCGTGCCATTGCTCCAGACTTTTAAGGGGGCCCAAGACTTCCCGCCGGCT
TTGACCTACGCCCTCGTCATGGCAGGGGCGGCCGCGTGGGCCTTGGCCTC
CTTCACCGCGTCCTCCGCCTGGCTCTCCCTCGGCCTGGCCATAAGTTTGG
CAGGAGGTCTGCACTACCTCTCGACCCTGGGGCTTGTTCGGGCCGCGGTG
GTTGTACCTGCAACATTTCCCTTGGTCCTGGCGGGCTCGATCAGCGCCCC
AGCCCTCACGTCCTTCGACCCCATTTTCATTCTCGGCCTACTTGCTGGAA
TGGGCTTCCAGGGATTTCAGCATTTGCAAGAGACAGCACGCGTCGAGGTC
TTCGCCCTTGTGACTGTGGGGTTCGTGACATTATTGACTTCCCCTGGTTT
AATTGGTTACACGGCCTCGCGGGCTCTCTCCCCTCTCAGTACCTACGCCT
TCCAACTCTCTGGCGCGGCCCTTGTCCTTATCCTCGCCTTCGTTCAACCA
TCCCTTCCTTCCTCGTTCATATCTGGTCTTACCCTTGCCCTTCTACTGGC
GCGCTATCTGAGCAAGCCCCCGGAGTTCACAGAAGCTGCGCGGCAGAACG
CCCGTGCCTCCCATTGGCTCTTCGCCGCCTTTCTAGCTACCCTGTCGATC
ATCCTCACATTCGAAGTAAACGAACAGTACAACCCGGCAGGCCTCACAGC
ATTTACATTCATCCTACTCGGCACGGGCGTGGCGGTCCTCAGCACATCAT
GTCTGGCAGCCACTGCACGAGTTTGGGGGCCAGTGCGGTCAGGCGAACAC
CAGATGGTGACATTGGACTTCCTAGCCCTCTGCGCGTACTTCATCATGCC
CCTCCTTTACGTCACCTACCTCGGTCTACAGCAGCTCTTGCCGTCTCTTT
CGTCCTCTCCCCTCCTGATTTCCGCTCCGGGCGTGGACTGGGTCCTGCAC
CTGCTGCAGCCGCTGCAGCGACCACTGCAGCTGCTGCAGCTTTCATATCC
CTTGGCGCCTGCTTTGTTGCTGGGGTGGATGGTGGTGGTCACCCAGGAAG
CATTCGAGGAGTCCTCGATTCTGTGGGCGCATTGGTTGATCGGAACGTAC
TCATTGGGTACGCTCGATACGAAGCACGTGGCATTAGTGGCCCGATTGGA
GGCGCTCTTGGAAAGCGTGCCAAATGAAGGAGGGAGGGAGGGAGAGGAGT
ATCTGCCGGCATTGCTGAAGGAGGCAGGGTTGCCGGTGTTGAATATTTTT
GTCTCGCCTTCCGTCGCTATCTCTCATGGGGATTTGTGTGCGGCATTGAG
CAAAGAGGGGCATGTATTAGGGTTGGAAACAGCAGCAGGACCTTTCGCGT
TTCCTCCGTCAGTGATGAAGGAGGTGTCAACAGGAGCAGCAGCACTGAAG
AAAGCGCAAGCTAGTGGTGGGGGCAAAGGAGAGGTGGACTGGTACCTCGG
GACTCAAGGATACAGAAATCCATGGGCTCTTTGGAAGGCCTCAACGATGA
ATATGCGTTTTGTCGCACCGGGTCACAGGGTGGTGTTGGGGGATAACGCA
GGGGTGGCTCTGTGTAGGCTGCTGGATCCATGGTGCAAAGGGGGTGTGGT
GATGGTGGAGGTGGGGGCGAGAGGGGTACATTTGCTGGCAACATTGAAGG
ACTTGCGGGAGCAGGCGGAGAGGGGCGGGTATGTGGTAGACTCCTTGTCA
GCTGTTTGCCCAGAGGTGCAGCCCATGGTGCTGCCGGTCGAGGGAGGAAC
TGGAGCGTTTTGA
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protein sequence of NO04G04870.1

>NO04G04870.1-protein ID=NO04G04870.1-protein|Name=NO04G04870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MAPHVRGTPTRVRPALLHFTFVVLAVFFAFPALSVPLLQTFKGAQDFPPA
LTYALVMAGAAAWALASFTASSAWLSLGLAISLAGGLHYLSTLGLVRAAV
VVPATFPLVLAGSISAPALTSFDPIFILGLLAGMGFQGFQHLQETARVEV
FALVTVGFVTLLTSPGLIGYTASRALSPLSTYAFQLSGAALVLILAFVQP
SLPSSFISGLTLALLLARYLSKPPEFTEAARQNARASHWLFAAFLATLSI
ILTFEVNEQYNPAGLTAFTFILLGTGVAVLSTSCLAATARVWGPVRSGEH
QMVTLDFLALCAYFIMPLLYVTYLGLQQLLPSLSSSPLLISAPGVDWVLH
LLQPLQRPLQLLQLSYPLAPALLLGWMVVVTQEAFEESSILWAHWLIGTY
SLGTLDTKHVALVARLEALLESVPNEGGREGEEYLPALLKEAGLPVLNIF
VSPSVAISHGDLCAALSKEGHVLGLETAAGPFAFPPSVMKEVSTGAAALK
KAQASGGGKGEVDWYLGTQGYRNPWALWKASTMNMRFVAPGHRVVLGDNA
GVALCRLLDPWCKGGVVMVEVGARGVHLLATLKDLREQAERGGYVVDSLS
AVCPEVQPMVLPVEGGTGAF*
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Synonyms
Publications