NO04G04840, NO04G04840 (gene) Nannochloropsis oceanica

Overview
NameNO04G04840
Unique NameNO04G04840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr4:1322677..1323531 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1322677..1323531 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO04G04840 vs. NCBI_GenBank
Match: EWM28875.1 (hypothetical protein Naga_100095g8 [Nannochloropsis gaditana])

HSP 1 Score: 85.1 bits (209), Expect = 3.800e-13
Identity = 54/109 (49.54%), Postives = 65/109 (59.63%), Query Frame = 0
Query:   36 LRTSVSYTAGVPLHRQLTAVTAAQQRKEVDA--GIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKK 143
            LR SVS T G+ L R L   + + Q    DA     S   W+  LT+ ER  VR  I+AA+K Q  +YE+VL +A ALQEE     APSRLDYIK+ VQF  RL EAKK
Sbjct:  105 LRMSVSDTPGI-LCRPLLLPSISNQLNMEDASKNTLSNKTWQTSLTEEEREVVRLKIMAAYKRQAKTYEDVLNVAAALQEEECFGRAPSRLDYIKDTVQFSHRLGEAKK 212          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: GAX94258.1 (Hypothetical protein PINS_002128 [Pythium insidiosum])

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-8
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151
            +WR+ LT  ER+ VR  I  A+  + TSYE++L++A A++EE LH  APSRLDY K+  +F+ R V+ KK+   G+ AAL
Sbjct:  151 DWRMYLTIEERQAVRSKIRDAYSSRCTSYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 229          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_009524419.1 (hypothetical protein PHYSODRAFT_350785 [Phytophthora sojae] >EGZ21702.1 hypothetical protein PHYSODRAFT_350785 [Phytophthora sojae])

HSP 1 Score: 67.4 bits (163), Expect = 8.200e-8
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151
            +WR+ LT  ER+ VR  I  A+  + T+YE++L++A A++EE LH  APSRLDY K+  +F+ R V+ KK+   G+ AAL
Sbjct:  230 DWRMYLTIEERQAVRSKIRDAYTSRCTTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 308          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: POM73857.1 (hypothetical protein PHPALM_9259 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 67.4 bits (163), Expect = 8.200e-8
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151
            +WR+ LT  ER+ VR  I  A+  + T+YE++L++A A++EE LH  APSRLDY K+  +F+ R V+ KK+   G+ AAL
Sbjct:  272 DWRMYLTIEERQAVRSKIRDAYTSRCTTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 350          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_024573416.1 (hypothetical protein PHALS_04510 [Plasmopara halstedii] >CEG37047.1 hypothetical protein PHALS_04510 [Plasmopara halstedii])

HSP 1 Score: 67.0 bits (162), Expect = 1.100e-7
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151
            +WR+ LT  ER+ VR  I  A+  + +SYE++L++A A++EE LH  APSRLDY K+  +F+ R V+ KK+   G+ AAL
Sbjct:  120 DWRMYLTIEERQAVRSKIRDAYTSRCSSYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 198          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_008905131.1 (hypothetical protein PPTG_11742 [Phytophthora parasitica INRA-310] >ETI47450.1 hypothetical protein F443_08367 [Phytophthora parasitica P1569] >ETK87372.1 hypothetical protein L915_08199 [Phytophthora parasitica] >ETL40789.1 hypothetical protein L916_08123 [Phytophthora parasitica] >ETL93922.1 hypothetical protein L917_08021 [Phytophthora parasitica] >ETM47186.1 hypothetical protein L914_08085 [Phytophthora parasitica] >ETN09298.1 hypothetical protein PPTG_11742 [Phytophthora parasitica INRA-310] >ETO76148.1 hypothetical protein F444_08426 [Phytophthora parasitica P1976] >ETP17232.1 hypothetical protein F441_08352 [Phytophthora parasitica CJ01A1] >ETP45272.1 hypothetical protein F442_08309 [Phytophthora parasitica P10297] >KUF80311.1 hypothetical protein AM587_10016929 [Phytophthora nicotianae])

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7
Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151
            +WR+ LT  ER+ VR  I  A+  + ++YE++L++A A++EE LH  APSRLDY K+  +F+ R V+ KK+   G+ AAL
Sbjct:  128 DWRMYLTIEERQAVRSKIRDAYTSRCSTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 206          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_002902553.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY56479.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7
Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151
            +WR+ LT  ER+ VR  I  A+  + ++YE++L++A A++EE LH  APSRLDY K+  +F+ R V+ KK+   G+ AAL
Sbjct:  254 DWRMYLTIEERQAVRSKIRDAYTSRCSTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 332          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_012198026.1 (hypothetical protein SPRG_04046 [Saprolegnia parasitica CBS 223.65] >KDO31431.1 hypothetical protein SPRG_04046 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   47 PLHRQLTAVTAAQQRKEVDAGIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRL-VEAKKNTGERAAL 151
            P++ QL+A   ++ +    +G     +WR+ LT  ER+ VR  I  A+     +YEE+L+ A A++EE LH  APSRLDY K+  +F+ R+ ++ ++  G+ AAL
Sbjct:  112 PVNPQLSAAAPSRSQLPSSSG-PPPQDWRMYLTIEERQAVRSKIQDAYTSTCKTYEELLQAASAIEEELLHIAAPSRLDYFKSGFEFENRVKLKREQLQGQLAAL 215          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: CCA13889.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 65.1 bits (157), Expect = 4.100e-7
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 0
Query:   74 WRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRL 138
            WR+ LT  ER+ VR  I  A+ ++ TSY+++L++A A++EE LH  APSRLDY K+  +F+ R+
Sbjct:  147 WRMYLTIEERQAVRSKIRDAYLNKCTSYDDILQVACAIEEELLHISAPSRLDYFKSGFEFETRV 210          
BLAST of NO04G04840 vs. NCBI_GenBank
Match: OQR98470.1 (hypothetical protein ACHHYP_08596 [Achlya hypogyna])

HSP 1 Score: 64.3 bits (155), Expect = 6.900e-7
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 0
Query:   43 TAGVPLHRQLTAVTAAQQRKEVDAGIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRL-VEAKKNTGERAAL 151
            ++  P   QL A TA   +           +WR+ LT  ER+ VR  I  A+     +YEE+L+ A A++EE LH  APSRLDY K+  +F+ R+ ++ ++  G+ AAL
Sbjct:  113 SSSTPSRSQLPASTATPPQ-----------DWRMYLTIEERQAVRSKIQDAYTSTCKTYEELLQAASAIEEELLHIAAPSRLDYFKSGFEFENRVKLKREQLQGQLAAL 210          
The following BLAST results are available for this feature:
BLAST of NO04G04840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM28875.13.800e-1349.54hypothetical protein Naga_100095g8 [Nannochloropsi... [more]
GAX94258.12.800e-847.50Hypothetical protein PINS_002128 [Pythium insidios... [more]
XP_009524419.18.200e-846.25hypothetical protein PHYSODRAFT_350785 [Phytophtho... [more]
POM73857.18.200e-846.25hypothetical protein PHPALM_9259 [Phytophthora pal... [more]
XP_024573416.11.100e-746.25hypothetical protein PHALS_04510 [Plasmopara halst... [more]
XP_008905131.12.400e-745.00hypothetical protein PPTG_11742 [Phytophthora para... [more]
XP_002902553.12.400e-745.00conserved hypothetical protein [Phytophthora infes... [more]
XP_012198026.12.400e-737.14hypothetical protein SPRG_04046 [Saprolegnia paras... [more]
CCA13889.14.100e-746.88conserved hypothetical protein [Albugo laibachii N... [more]
OQR98470.16.900e-736.70hypothetical protein ACHHYP_08596 [Achlya hypogyna... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009291NSK009291Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04840.1NO04G04840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579694gene_2271Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100095g8gene1729Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04840.1NO04G04840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04840 ID=NO04G04840|Name=NO04G04840|organism=Nannochloropsis oceanica|type=gene|length=855bp
ATGGCTCCCGCCACCTTGCCCACCGATCAAGAATCTCTCCCGCCAGCGCA
GCCACGGCCACCGTCTCTTGCCCCCGTGCCCTCGCCCACTCTTCCCATCC
CCATCCTCCGGACCTCCGTCTCCTATACAGCCGGCGTACCCCTCCACCGT
CAACTCACTGCCGTTACCGCCGCCCAACAACGCAAAGAAGTCGATGCAGG
AATAAGGTCTGGCGGGGAATGGCGGGTGCCTCTCACGGATACCGAACGGA
GGAAGGTCCGCCAAAATATACTGGCAGCATTCAAACACCAGACCACAAGC
TATGAGGAAGTGTTAGAATTAGCGGTGGCCCTGCAAGAAGAAGCTCTACA
TGCCTGGGCCCCTTCTCGGTTGGACTATATCAAAAATGCTGTACAATTTG
ATCGGCGTCTGGTAGAAGCAAAGAAAAACACAGGAGAACGGGCTGCTCTA
ACGACATCAGCGGCAGCGGCAAAAATGGGTAGTGGGATGGGAAAAAATGA
AGAAGAGGGGAGAGGAAAAGGGAAAAGGAGCAGGTCAGGGAAGATAAAGA
CGGCGACGGCATCTATAAAGAAGCAGGAGAAAGGGGACGAAGGAGAAGCA
ATGAAGCGAAAAGTGGAAGTTCCGAAAGACATCAGCGTGGAAGAGGCGGA
AAAGACGGAAGCAGAGACTGGGGTAGGCAAGAATAAGTTTAGGCGGGCAT
CGCGACGAAGCATCAAGGATGCACAAGAAGAAGGAGCGGAGAAGAAAGGG
GCTAATTATTTTGTGCCCACGAAAGCTGTGGAAGAAAAGACGAATGAATT
TGCAGCAGCAGCAGCAAGCACGATTGGCTCCCATCGAAAGCGGATCCGAA
AGTAG
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protein sequence of NO04G04840.1

>NO04G04840.1-protein ID=NO04G04840.1-protein|Name=NO04G04840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MAPATLPTDQESLPPAQPRPPSLAPVPSPTLPIPILRTSVSYTAGVPLHR
QLTAVTAAQQRKEVDAGIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTS
YEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKNTGERAAL
TTSAAAAKMGSGMGKNEEEGRGKGKRSRSGKIKTATASIKKQEKGDEGEA
MKRKVEVPKDISVEEAEKTEAETGVGKNKFRRASRRSIKDAQEEGAEKKG
ANYFVPTKAVEEKTNEFAAAAASTIGSHRKRIRK*
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Synonyms
Publications