NO04G04700, NO04G04700 (gene) Nannochloropsis oceanica

Overview
NameNO04G04700
Unique NameNO04G04700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr4:1279784..1280977 -

Link to JBrowse

Properties
Property NameValue
DescriptionDerlin
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1279784..1280977 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR022764Peptidase_S54_rhomboid_dom
IPR015940UBA/transl_elong_EF1B_N_euk
Homology
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_003566857.1 (rhomboid-like protein 20 [Brachypodium distachyon] >KQK03831.1 hypothetical protein BRADI_2g10080v3 [Brachypodium distachyon])

HSP 1 Score: 136.0 bits (341), Expect = 2.200e-28
Identity = 99/331 (29.91%), Postives = 148/331 (44.71%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G ++GF NAPVT+   L     S++ S  +   AL L    I++   +WR+  S  AFQ  P+ + G +LLY FR FERQ+GS K+  F + +  +++  +      +      K       LASGP+G ++  F+ F+  +P  +     +FGV+ SDKS+ Y  G QLLL     + IP +CGL+AG LYR NVLGI+++ LP ++    A   +P      P   +                     P  G                                   P A   E +I ML+ +GF+  A  +AL  A N++ VA N LL
Sbjct:    4 GGVSGFQNAPVTRAVVLASGLLSVVFSANRRARALGLSYQEIVKNFRLWRIFASVFAFQSTPELIFGLYLLYYFRVFERQIGSNKYSVFSLFTISVSSLLQILSLVLL------KDSNYISALASGPYGLIFGSFIPFFLDIPITS--RFRIFGVNFSDKSIIYLAGLQLLLSSWKRSLIPGICGLVAGSLYRLNVLGIRRMKLPQIIASFFARFFAP-----PPGSSSRPSRSLVGNMSSHTGRAVQNQPSTGS---------------------------------APVAEPPESSIAMLVSMGFDANAARQALMRARNDINVATNILL 288          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_006645750.1 (PREDICTED: rhomboid-like protein 20 [Oryza brachyantha])

HSP 1 Score: 136.0 bits (341), Expect = 2.200e-28
Identity = 80/218 (36.70%), Postives = 120/218 (55.05%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSP 220
            G ++GF NAPVT+   L     S++ S  +   AL L    I++   +WR+ TS  AFQ  P+ + G +LLY FR FERQ+GS K+  F + +  ++   E      +      K       LASGP+G ++A F+ F+  +P  +     +FGV+ +DKS  Y  G QLLL  G  + IP +CGL+AG LYR NVLGI+++ +P ++    A   +P
Sbjct:    3 GGVSGFQNAPVTRAVVLASGLLSVVFSAQRRARALGLSYQGIVKNFRLWRIFTSGFAFQSTPELLFGMYLLYYFRVFERQIGSNKYSVFSLFTIAVSLLLEILSLVLL------KDTNYLSTLASGPYGLIFASFIPFFLDIPVTS--RFRIFGVNFTDKSFIYLAGLQLLLSSGKRSLIPGICGLIAGSLYRLNVLGIRRIKMPQIIASFFARFFAP 212          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_002900599.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY59914.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 136.0 bits (341), Expect = 2.200e-28
Identity = 112/338 (33.14%), Postives = 153/338 (45.27%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAI---AAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPA--PASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLLAG 335
            G L GF  APVT  + L V  AS  S     G  L LD   IL + + WRL++SQL F       LG + ++ FR  ERQ+GSRKFGS LV   L++ + + A    + W+  +           +  GP+  + A  V F   +PKL+P+   V+G+  SDKS  Y +   +L    +   IP + G   G+L+R   LG  ++ LP  VC  L  +L P+ +       A                     PGA  P  Q G                          +P  A  P SE+AI+ LM LGF+R   ++ALQ  DNNVE AANRLL G
Sbjct:    3 GDLRGFYGAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSRSQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKT-----------IPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYML-MLVLFVRDFRALIPFMGGSFLGLLFRSTPLG--RLQLPSFVCSIL-GLLHPLFKVVPASTLALQRQRRALEAQRRVNARFNRRPGA--PAVQ-GQGFRDQLLPGAGGAMPGGAPAAGGMLLPHMAAQPPSEDAIQQLMALGFDRERALQALQTTDNNVEAAANRLLNG 322          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_009116375.1 (PREDICTED: rhomboid-like protein 20 [Brassica rapa])

HSP 1 Score: 136.0 bits (341), Expect = 2.200e-28
Identity = 101/331 (30.51%), Postives = 142/331 (42.90%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G  +GF NAPVTK + +     ++L         L L    I  K  IW+L+TS   F   P+ + G +LLY FR FERQ+GS K+  F++ S  L+   E  + + +  +          +L SGP+G ++A F+ FY  +P        VFGV+ SDKS  Y  G QLLL     + IP +CG++AG LYR N+LGI+K   P  V    + +  P   +  P   +                     P A                                         SEEAI  L+ +GF+R A  +AL  A N+V  A N LL
Sbjct:    3 GGPSGFHNAPVTKAFVITSALFTVLFGIQGRSSKLGLSYQDIFEKFRIWKLITSSFVFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTLSLLLEVTLLSLLKDTTEN-------LLTSGPYGLIFASFIPFYLDIPV--STRFRVFGVNFSDKSFIYLAGLQLLLSSWKRSIIPGVCGIIAGSLYRLNILGIRKAKFPEFVASFFSRLSLPSFSSSSPPTPSRNIVGTISPNTVRRAERSQPAPMASS------------------------------------VEPSEEAIATLVSMGFDRNAARQALVHARNDVNAATNILL 288          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_013663391.1 (rhomboid-like protein 20 isoform X1 [Brassica napus])

HSP 1 Score: 136.0 bits (341), Expect = 2.200e-28
Identity = 101/331 (30.51%), Postives = 142/331 (42.90%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G  +GF NAPVTK + +     ++L         L L    I  K  IW+L+TS  AF   P+ + G +LLY FR FERQ+GS K+  F++ S  L+   E  + + +  +          +L SGP+G ++A F+ FY  +P        VFGV+ SDKS  Y  G QLLL     +  P +CG++AG LYR N+LGI+K   P  V    + +  P   +  P   +                     P A                                         SEEAI  L+ +GF+R A  +AL  A N+V  A N LL
Sbjct:    3 GGPSGFHNAPVTKAFVITSALFTVLFGIQGRSSKLGLSYQDIFEKFRIWKLITSSFAFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTLSLLLEVTLLSLLKDTTEN-------LLTSGPYGLIFASFIPFYLDIPV--STRFRVFGVNFSDKSFIYLAGLQLLLSSWKRSIFPGVCGIIAGSLYRLNILGIRKAKFPEFVASFFSRLSLPSFSSSSPPTPSRNIVGTISPNTVRRAERSQPAPMASS------------------------------------VEPSEEAIATLVSMGFDRNAARQALVHARNDVNAATNILL 288          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_015649731.1 (PREDICTED: rhomboid-like protein 20 [Oryza sativa Japonica Group])

HSP 1 Score: 135.6 bits (340), Expect = 2.900e-28
Identity = 106/336 (31.55%), Postives = 160/336 (47.62%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLS-SYTQSGPALTLDLA--RILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWV-GPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTG-RPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G L GF NAPV++    +VV A+L S ++   G  L L L+   +  K  IW+L+TS  AF   P+ + G  LLY FR FERQ+GS K+  F+V ST ++   +    A++ GPS           L SGP+G ++A ++ F+  +P +  K   +FG+ +SDKS  Y  G QLL   GW + IP L G++AG+LYR N+ GI+++ LP  +   L+    P L    + +P  E                      +   R   G                           P      E +I  L+ +GF+RG+ +RAL   + +V +A+N LL
Sbjct:    3 GGLPGFHNAPVSRA---VVVAAALFSVAFGFRGRFLDLGLSYENVYGKLRIWKLITSLFAFSSTPELIFGAALLYYFRVFERQIGSNKYSVFIVFSTAVSVLLQILSLAYLKGPSLN--------PLTSGPYGLIFASYIPFFFDIP-ITTKF-RIFGLRLSDKSFIYLAGLQLLFSSGWRSIIPGLSGILAGLLYRLNIFGIRRLKLPDSMTSLLSRFSCPFLNNSYQRLPVTENDGNIP----------------SNQTRQTEGVH-------------------------PTTEDPMESSIATLVSMGFDRGSAIRALALTNYDVNLASNILL 284          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_015616986.1 (PREDICTED: rhomboid-like protein 20 [Oryza sativa Japonica Group] >BAA88548.1 unknown protein [Oryza sativa Japonica Group] >BAA89569.1 unknown protein [Oryza sativa Japonica Group] >BAF04608.1 Os01g0268800 [Oryza sativa Japonica Group] >BAG93409.1 unnamed protein product [Oryza sativa Japonica Group] >BAG97406.1 unnamed protein product [Oryza sativa Japonica Group] >BAS71487.1 Os01g0268800 [Oryza sativa Japonica Group])

HSP 1 Score: 134.8 bits (338), Expect = 4.900e-28
Identity = 99/331 (29.91%), Postives = 148/331 (44.71%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G ++GF NAPVT+   L     S++ S  +   AL L    I++   +W+L  S  AFQ  P+ + G +LLY FR FERQ+GS K+  F + +  ++   E      +      K       LA GP+G ++A F+ F+  +P  +     +FGV+ SDKS  Y  G QLLL  G  + IP +CGL+AG LYR NVLGI+++ +P V+    A + +P                                  + G   +P                           + PP    E +I ML+ +GF+  A  +AL  A N++  A N LL
Sbjct:    3 GGVSGFQNAPVTRAVVLASGLLSVVFSAQRRARALVLSHQGIVKNFRLWKLFASGFAFQSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFTISVSLLLEILSLVLL------KDTNYLSTLACGPYGLIFASFIPFFLDIPVTS--RFRIFGVNFSDKSFIYLAGLQLLLSSGKRSLIPGICGLIAGSLYRLNVLGIRRMKMPQVIASFFARIFAP----------------------------------SSGGSSRPSRSLVGNMSSRTSRAVQNNQPSGFAPVVEPP----ESSIAMLVSMGFDGNAARQALMRARNDINTATNILL 287          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: CDM82752.1 (unnamed protein product [Triticum aestivum])

HSP 1 Score: 134.8 bits (338), Expect = 4.900e-28
Identity = 102/331 (30.82%), Postives = 147/331 (44.41%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G ++GF NAPVT+   L     S++ S  +   AL L    I++   +WR+  S  AFQ  P+ ++G +LLY FR FERQMGS K+  F + +  ++   E      +      K       LASGP+G ++A F+ F+  +P  +     +FGV+ SDKS  Y  G QLL+     + IP +CGL+AG LYR NV GI++  LP +V    A   +P                                P A   R  P                           + PP    E +I ML+ +GF+  A  +AL  A N++ VA N LL
Sbjct:    4 GGVSGFHNAPVTRAIVLASGLLSVVFSVNRRARALGLSYQDIIKNFRVWRIFASLFAFQSTPELMVGLYLLYYFRVFERQMGSNKYSVFSLFAIAVSLPLEILSLVLL------KDTNYITALASGPYGLIFASFIPFFLDIPITS--RFRIFGVNFSDKSFIYLAGLQLLVSSWKRSLIPGICGLIAGSLYRLNVFGIRRRKLPQIVASFFARFFAP--------------------------------PSASSSR--PSRSLVGNVPSHTGRTVQNQPSTGFAPVVEPP----ESSIAMLVSMGFDSNAARQALVRARNDINVATNILL 288          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: OAP04932.1 (hypothetical protein AXX17_AT3G51330 [Arabidopsis thaliana])

HSP 1 Score: 134.8 bits (338), Expect = 4.900e-28
Identity = 102/332 (30.72%), Postives = 145/332 (43.67%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVL-QTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G  +GF NAPVTK + +     ++          L L    I  K  IW+L+ S  AF   P+ + G +LLY FR FERQ+GS K+  F++ S  ++   E  + + +  +          +L SGP+G ++A F+ FY  +P        VFGV+ SDKS  Y  G QLLL     +  P +CG++AG LYR N+LGI+K   P  V    + +  P    +  P P +                      G    R QP                           +P     SEEAI  L+ +GF+R A  +AL  A N+V  A N LL
Sbjct:  219 GGPSGFHNAPVTKAFVITSALFTVFFGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTVSLLLEVILLSLLKDTTAN-------LLTSGPYGLIFASFIPFYLDIPV--STRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPGICGIIAGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSSN------------IVGTISPNTGRRAERSQPA-------------------------PLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILL 504          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_020186606.1 (rhomboid-like protein 20 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 134.8 bits (338), Expect = 4.900e-28
Identity = 103/331 (31.12%), Postives = 146/331 (44.11%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G ++GF NAPVT+   L     S++ S  +   AL L    I++   +WR+  S  AFQ  P+ + G +LLY FR FERQMGS K+  F + +  ++   E      +      K       LASGP+G ++A FV F+  +P  +     +FGV+ SDKS  Y  G QLL+     + IP +CGL+AG LYR NV GI++  LP +V    A   +P                                P A   R  P                           + PP    E +I ML+ +GF+  A  +AL  A N++ VA N LL
Sbjct:    4 GGVSGFHNAPVTRAIVLASGLLSVVFSVNRRARALGLSYQDIIKNFRVWRIFASVFAFQSTPELMFGLYLLYYFRVFERQMGSNKYSVFSLFAIAVSLPLEILSLVLL------KDTNYITALASGPYGLIFASFVPFFLDIPITS--RFRIFGVNFSDKSFIYLAGLQLLVSSWKRSLIPGICGLIAGSLYRLNVFGIRRRKLPQIVASFFARFFAP--------------------------------PSASSSR--PSRSLVGNVPSHTGRTVQNQPSTGFSPVVEPP----ESSIAMLVSMGFDSNAARQALVRARNDINVATNILL 288          
The following BLAST results are available for this feature:
BLAST of NO04G04700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_003566857.12.200e-2829.91rhomboid-like protein 20 [Brachypodium distachyon]... [more]
XP_006645750.12.200e-2836.70PREDICTED: rhomboid-like protein 20 [Oryza brachya... [more]
XP_002900599.12.200e-2833.14conserved hypothetical protein [Phytophthora infes... [more]
XP_009116375.12.200e-2830.51PREDICTED: rhomboid-like protein 20 [Brassica rapa... [more]
XP_013663391.12.200e-2830.51rhomboid-like protein 20 isoform X1 [Brassica napu... [more]
XP_015649731.12.900e-2831.55PREDICTED: rhomboid-like protein 20 [Oryza sativa ... [more]
XP_015616986.14.900e-2829.91PREDICTED: rhomboid-like protein 20 [Oryza sativa ... [more]
CDM82752.14.900e-2830.82unnamed protein product [Triticum aestivum][more]
OAP04932.14.900e-2830.72hypothetical protein AXX17_AT3G51330 [Arabidopsis ... [more]
XP_020186606.14.900e-2831.12rhomboid-like protein 20 [Aegilops tauschii subsp.... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009310NSK009310Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04700.1NO04G04700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298230gene_2258Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100133g6gene1744Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04700.1NO04G04700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04700 ID=NO04G04700|Name=NO04G04700|organism=Nannochloropsis oceanica|type=gene|length=1194bp
ACAGGGACTTTCACCTTGCGACACTTCGGATCGTCTCCCTCCCTCCTTCT
GTCCTTATCCTCCCTCTCCTTGACCAGCAAGCAGCATTAGCAGCATCACC
ATTCCGCCCCGCAGCACACCTAAGCCGCACCTACAGAGCTACACACCCAA
GAGCAAAGCATAAAGCATGGGTGCCCTCGCCGGATTCATCAACGCCCCCG
TCACCAAAGGCTACTGCCTCTTGGTGGTGGGCGCCTCCCTCCTTTCCTCC
TACACCCAATCCGGCCCAGCTCTCACTCTAGACCTCGCCCGCATTCTCCG
CAAGGGGGAAATCTGGCGTCTGCTCACCAGTCAACTAGCCTTCCAAGAAC
ATCCACAAACCGTGCTCGGAACATTTTTACTATACACCTTTCGGCATTTT
GAACGGCAGATGGGCTCGAGGAAATTTGGGTCTTTTTTAGTCCTTTCCAC
CTTGCTAGCTACCTCGGCCGAAGCTGCCATCGCTGCCTGGGTGGGTCCAA
GTGGAGGCGGTAAAGGAGGCAGGAATGGATTGGTGCTGGCATCAGGGCCG
TTCGGGGCGATGTACGCGATGTTTGTCCTGTTCTATACGACTGTGCCGAA
GCTGAATCCAAAGTTGGTAGGGGTTTTCGGGGTGGACATAAGTGACAAAA
GCATGTACTACGCGGTGGGGGCGCAGCTGCTGCTGGGGGGTGGGTGGGCG
ACAGCAATCCCGGCTTTGTGTGGTTTAATGGCGGGGATGTTGTACAGAAG
AAATGTGCTGGGGATTCAGAAGGTGATGCTTCCGGGGGTTGTGTGTAGGT
GTCTTGCATCCATGCTTAGCCCGGTACTGCAGACGGGGCGGCCGATCCCG
GGGGCGGAGAGGCGAAGGCGGGGAGGAGGGGGAGGAGGAGGAGGGCCAGG
TGGGAGGGAGCAGCTGTTGCCGGGTGCGGGGGGCCCGAGGTATCAGCCAG
GACAACCAAGAAGGGGGGGAGGGAGACACCAACCAGTAGGAGGAGCTGCA
GGAGCAGGAGTAGCGGTCCCGCTTGCTGGCATTCCACCGCCGGCGCCGGC
ATCGGAGGAGGCGATTGAGATGTTGATGGGTTTGGGATTCGAGAGAGGGG
CGGTGGTGAGGGCATTGCAGGCTGCGGACAACAATGTAGAGGTGGCGGCC
AATCGGTTGCTGGCGGGGGGATGAAGGAAGGAGGGTGGGAGGGA
back to top

protein sequence of NO04G04700.1

>NO04G04700.1-protein ID=NO04G04700.1-protein|Name=NO04G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MGALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIW
RLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATS
AEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKL
VGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGI
QKVMLPGVVCRCLASMLSPVLQTGRPIPGAERRRRGGGGGGGGPGGREQL
LPGAGGPRYQPGQPRRGGGRHQPVGGAAGAGVAVPLAGIPPPAPASEEAI
EMLMGLGFERGAVVRALQAADNNVEVAANRLLAGG*
back to top
Synonyms
Publications