NO04G04660, NO04G04660 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04660
Unique Name	NO04G04660
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2727
Alignment location	chr4:1267552..1270278 -

Link to JBrowse

Properties


Property Name	Value
Description	Ribonucleoside-diphosphate reductase small chain

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1267552..1270278 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0009058	biosynthetic process
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR009078	Ferritin-like_SF
IPR000358	RNR_small

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Homology

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_008911516.1 (ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica INRA-310] >ETI37662.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica P1569] >ETK77928.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >ETL31361.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >ETL84580.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >ETM37720.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica] >ETN02972.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica INRA-310] >ETO66456.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica P1976] >ETP07571.1 ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica CJ01A1])

HSP 1 Score: 533.9 bits (1374), Expect = 4.100e-148
Identity = 253/342 (73.98%), Postives = 291/342 (85.09%), Query Frame = 0

Query:   37 DEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            +E+  L+ SE K +EL GE+  E  L +NP R+V+FPIQ  ++W MYK+AEASFWTAEELDL HD  DW KL+D ERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AI+T+PCV +KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEG+H DFACLLYSK   K PE RV +II+DAV IE EF+ D+LPVELIGMNS LMC YIEF ADRLL SLG SK YH +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:  105 EEQPELEMSEFKRKELNGEIPVEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDWSKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIIRDAVVIEHEFVRDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYHAKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 446

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: KUF76152.1 (Ribonucleoside-diphosphate reductase small chain [Phytophthora nicotianae] >KUF97172.1 hypothetical protein AM588_10011002 [Phytophthora nicotianae])

HSP 1 Score: 533.9 bits (1374), Expect = 4.100e-148
Identity = 253/342 (73.98%), Postives = 291/342 (85.09%), Query Frame = 0

Query:   37 DEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            +E+  L+ SE K +EL GE+  E  L +NP R+V+FPIQ  ++W MYK+AEASFWTAEELDL HD  DW KL+D ERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AI+T+PCV +KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEG+H DFACLLYSK   K PE RV +II+DAV IE EF+ D+LPVELIGMNS LMC YIEF ADRLL SLG SK YH +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:   38 EEQPELEMSEFKRKELNGEIPVEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDWSKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIIRDAVVIEHEFVRDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYHAKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 379

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: OWZ01178.1 (Ribonucleoside-diphosphate reductase small chain [Phytophthora megakarya])

HSP 1 Score: 533.1 bits (1372), Expect = 7.000e-148
Identity = 251/341 (73.61%), Postives = 294/341 (86.22%), Query Frame = 0

Query:   38 EELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            EE +L+ SE K +EL GE+  E  L +NP R+V+FPIQ  D+W MYK+AEASFWTAEELDL HD  DWEKL+D ERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK+ LL AI+T+PCV++KA WAL+WCD + +S+ ERL+AFA+VEGIFFSGSFCSIFWLKKRGLMPGLSFSNE+ISRDEG+H DFACL+YSK   K PE RV +II+DAV IE EF+ ++LPVELIGMNS LMC YIEF ADRLL SLG SK Y+ +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:   30 EETMLQMSEFKRKELNGEIPPEPFLVENPNRFVLFPIQEHDVWQMYKKAEASFWTAEELDLVHDLKDWEKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTVEKNYLLRAIETIPCVQKKANWALKWCDPRVSSYPERLLAFASVEGIFFSGSFCSIFWLKKRGLMPGLSFSNEMISRDEGMHTDFACLMYSKLVNKLPESRVHEIIRDAVVIEHEFVCESLPVELIGMNSTLMCQYIEFVADRLLYSLGVSKIYNVKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 370

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: POM57413.1 (Ribonucleoside-diphosphate reductase small chain [Phytophthora palmivora var. palmivora])

HSP 1 Score: 531.2 bits (1367), Expect = 2.700e-147
Identity = 250/342 (73.10%), Postives = 292/342 (85.38%), Query Frame = 0

Query:   37 DEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            +++  L+ SE K +EL+GE+  E  L +NP R+V+FPIQ  D+W MYK+AEASFWTAEELDL HD  DW  L+D ERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AIDT+PCV++KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEG+H DFACL+YSK   K PE RV +I++DAV IE EF+ D+LPVELIGMNS LMC YIEF ADRLL SLG SK Y+ +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:   37 EQQPKLEMSEFKRKELSGEIPPEPFLVENPNRFVLFPIQEHDVWQMYKKAEASFWTAEELDLVHDLKDWGNLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIDTIPCVKKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLMYSKLVNKLPESRVHEIVRDAVVIEHEFVRDSLPVELIGMNSGLMCQYIEFVADRLLYSLGVSKIYNVKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 378

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: CBJ30029.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 530.0 bits (1364), Expect = 5.900e-147
Identity = 255/337 (75.67%), Postives = 288/337 (85.46%), Query Frame = 0

Query:   42 LKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            L+ SEM+ +E+ G +  E LL +NPGR+V+FPIQ  ++W MYK+AEA FWTAEELDLAHD  DWE L+D ERHFV HVLAFFAASDGIVNENLA NFS+EIQL EARCFYGFQIAIENIHSEVYSLLIDTY+K+  EK  L NA++TVPCVRRKA+WALRWCD K AS+AERL+AFAAVEGIFFSGSFC++FWLKKRGLMPGL FSNELISRDEGLH DFACLL+ K   K P ERV +II DAV IEKEFIT ALPVELIGMNS LM  YIEFCADRLL+ LGC K Y++ NPFDWM++ISLQGKTNFFEKRVGEY+KSGVG +  DQ F+LEA+F
Sbjct:   44 LEVSEMRRKEMEGTLKPEPLLVENPGRFVLFPIQDNEVWQMYKKAEACFWTAEELDLAHDHKDWEGLTDDERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIAIENIHSEVYSLLIDTYVKDAAEKTHLFNAMETVPCVRRKARWALRWCDPKLASYAERLVAFAAVEGIFFSGSFCAVFWLKKRGLMPGLCFSNELISRDEGLHTDFACLLFRKLVNKLPVERVAEIICDAVDIEKEFITSALPVELIGMNSALMRQYIEFCADRLLMELGCEKKYNSTNPFDWMEMISLQGKTNFFEKRVGEYSKSGVGVDAADQEFTLEADF 380

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: POM76408.1 (Ribonucleoside-diphosphate reductase small chain [Phytophthora palmivora var. palmivora])

HSP 1 Score: 528.9 bits (1361), Expect = 1.300e-146
Identity = 247/337 (73.29%), Postives = 289/337 (85.76%), Query Frame = 0

Query:   42 LKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            L+ SE K +E+ GE+  E  L  NP R+V+FPIQ  D+W MYK+AEASFWTAEELDL HD  DWEKL+D ERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AI+T+PCV++KA WAL+WCD + +S+ ERL+AFA+VEGIFFSGSFCSIFWLKKRGLMPGLSFSNE+ISRDEG+H DFACL+YSK   K PE RV +I++DAV IE EF+ ++LPVELIGMNS LMC YIEF ADRLL SLG SK YH +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   ++QVF+L+A+F
Sbjct:   35 LEMSEYKRKEVNGELPPEPFLVPNPNRFVLFPIQEHDVWQMYKKAEASFWTAEELDLVHDLKDWEKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTMEKDYLLRAIETIPCVQKKANWALKWCDSRVSSYPERLLAFASVEGIFFSGSFCSIFWLKKRGLMPGLSFSNEMISRDEGMHTDFACLMYSKLVNKLPESRVHEIVRDAVVIEHEFVRESLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYHVKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAADEQVFTLDADF 371

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_009528586.1 (hypothetical protein PHYSODRAFT_346505 [Phytophthora sojae] >EGZ14837.1 hypothetical protein PHYSODRAFT_346505 [Phytophthora sojae])

HSP 1 Score: 524.6 bits (1350), Expect = 2.500e-145
Identity = 246/342 (71.93%), Postives = 291/342 (85.09%), Query Frame = 0

Query:   37 DEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            +E+  L+ SE K +E+ GE+  E  L  NP R+V+FPIQ  D+W MYK+AEASFWTAEELDL HD  DW+KL+D ER F+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIH+EVYSLLIDTYIK+  EK+ LL AI+T+PCV++KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEG+H DFACL+YSK   K PE RV +I+++AV IE EF+ D+LPVELIGMNS LMC YIEF ADRLL SLG  K Y+ +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:   45 EEQPKLEMSEYKRKEVNGELQPEPYLVSNPNRFVLFPIQEHDVWQMYKKAEASFWTAEELDLVHDLNDWQKLTDNERFFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHAEVYSLLIDTYIKDTMEKNHLLRAIETIPCVKKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLMYSKLVNKLPESRVHEIVREAVTIEHEFVCDSLPVELIGMNSTLMCQYIEFVADRLLYSLGVPKLYNVKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 386

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_009528577.1 (hypothetical protein PHYSODRAFT_560974 [Phytophthora sojae] >XP_009539297.1 hypothetical protein PHYSODRAFT_348632 [Phytophthora sojae] >EGZ05139.1 hypothetical protein PHYSODRAFT_348632 [Phytophthora sojae] >EGZ14828.1 hypothetical protein PHYSODRAFT_560974 [Phytophthora sojae])

HSP 1 Score: 521.2 bits (1341), Expect = 2.800e-144
Identity = 244/342 (71.35%), Postives = 291/342 (85.09%), Query Frame = 0

Query:   37 DEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            +E+  L+ SE K +E+ GE+  E  L  NP R+V+FPIQ  D+W MYK+AEASFWTAEELDL HD  DW+KL+D ER F+ HVLAFFAASDGIVNENLA+NFSNE+Q+P+ARCFYGFQIAIENIH+EVYSLLIDTYIK+  EK+ LL AI+T+PCV++KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISR+EG+H DFACL+YSK   K PE RV +I+++AV IE EF+ D+LPVELIGMNS LMC YIEF ADRLL SLG  K Y+ +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:   45 EEQPKLEMSEYKRKEVNGELQPEPYLVSNPNRFVLFPIQEHDVWQMYKKAEASFWTAEELDLVHDLNDWQKLTDNERFFIKHVLAFFAASDGIVNENLAMNFSNEVQVPKARCFYGFQIAIENIHAEVYSLLIDTYIKDTMEKNHLLRAIETIPCVKKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRNEGMHTDFACLMYSKLVNKLPESRVHEIVREAVTIEHEFVCDSLPVELIGMNSTLMCQYIEFVADRLLYSLGVPKLYNVKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 386

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_002288168.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93604.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 520.4 bits (1339), Expect = 4.700e-144
Identity = 250/334 (74.85%), Postives = 282/334 (84.43%), Query Frame = 0

Query:   45 SEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            S+ +  E  G    E LLK+NPGR+V+FPI+  +IW MYK+AEASFWTAEE+DLA D  DWE LS  ERHFVSHVLAFFAASDGIVNENL  NFS E+   EARCFYGFQIA+ENIHSE YSLLIDTYIK+ QEK  LLNAI+TVPCV++KA WALRWCD   ASFAER IAFAAVEGIFFSGSFC+IFWLKKRGLMPGL FSNELISRDEGLHCDFACL+YSK   + PE R+ +II +AV IEKEF++DALPVELIGMNS+LMC YIEFCADRLL +LGC K Y   NPF+WM++ISLQGKTNFFEKRVGEYAKSGVG N +DQVFS++A+F
Sbjct:    2 SDHRRAESEGRHAEEPLLKENPGRFVLFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLKDWESLSINERHFVSHVLAFFAASDGIVNENLTGNFSTEVTSAEARCFYGFQIAVENIHSETYSLLIDTYIKDAQEKDHLLNAIETVPCVQKKANWALRWCDAGNASFAERCIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHCDFACLIYSKLVNQLPESRIEEIITNAVEIEKEFVSDALPVELIGMNSKLMCQYIEFCADRLLGALGCKKHYMAVNPFEWMEMISLQGKTNFFEKRVGEYAKSGVGVNKDDQVFSIDADF 335

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: EJK48757.1 (hypothetical protein THAOC_32419 [Thalassiosira oceanica])

HSP 1 Score: 518.1 bits (1333), Expect = 2.300e-143
Identity = 248/336 (73.81%), Postives = 284/336 (84.52%), Query Frame = 0

Query:   45 SEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQD--IWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            SE K  E+ GE  +E LL DNP R+V+FPIQ  +  IW MYK+AEASFWTAEE+DLA D  DW+ L++ ERHFVSH+LAFFAASDGIVNENL  NF+ E+Q  EARCFYGFQIA+ENIHSE YSLLIDTYIK+  +K  LLNAI+TVPCV++KA WAL+WCD ++ASFAER IAFAAVEGIFFSGSFC+IFWLKKRGLMPGL FSNELISRDEGLHCDFACLLYSK   K PE R+V+I+  AV IEKEF+ DALPVELIGMNS LMC YIEFCADRLL +LGCSK Y   NPF+WM++ISLQGKTNFFEKRVGEY+KSGVG N ++QVFSL+ +F
Sbjct:  145 SEHKRAEINGEHADEPLLMDNPNRFVLFPIQDNEVRIWQMYKKAEASFWTAEEIDLAEDLKDWDGLTNNERHFVSHILAFFAASDGIVNENLCGNFATEVQSAEARCFYGFQIAVENIHSETYSLLIDTYIKDQADKMHLLNAIETVPCVQKKANWALKWCDSRHASFAERCIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHCDFACLLYSKLVNKVPESRIVEIVTHAVEIEKEFVVDALPVELIGMNSGLMCQYIEFCADRLLHALGCSKIYKASNPFEWMEMISLQGKTNFFEKRVGEYSKSGVGVNKDEQVFSLDCDF 480

The following BLAST results are available for this feature:

BLAST of NO04G04660 vs. NCBI_GenBank

BLAST of NO04G04660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008911516.1	4.100e-148	73.98	ribonucleoside-diphosphate reductase small chain [...	[more]
KUF76152.1	4.100e-148	73.98	Ribonucleoside-diphosphate reductase small chain [...	[more]
OWZ01178.1	7.000e-148	73.61	Ribonucleoside-diphosphate reductase small chain [...	[more]
POM57413.1	2.700e-147	73.10	Ribonucleoside-diphosphate reductase small chain [...	[more]
CBJ30029.1	5.900e-147	75.67	conserved unknown protein [Ectocarpus siliculosus]	[more]
POM76408.1	1.300e-146	73.29	Ribonucleoside-diphosphate reductase small chain [...	[more]
XP_009528586.1	2.500e-145	71.93	hypothetical protein PHYSODRAFT_346505 [Phytophtho...	[more]
XP_009528577.1	2.800e-144	71.35	hypothetical protein PHYSODRAFT_560974 [Phytophtho...	[more]
XP_002288168.1	4.700e-144	74.85	predicted protein [Thalassiosira pseudonana CCMP13...	[more]
EJK48757.1	2.300e-143	73.81	hypothetical protein THAOC_32419 [Thalassiosira oc...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL082	nonsL082	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL080	nonsL080	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR110	ngnoR110	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009320	NSK009320	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G04660.1	NO04G04660.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524768	gene_2254	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100133g14	gene1751	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G04660.1	NO04G04660.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G04660 ID=NO04G04660|Name=NO04G04660|organism=Nannochloropsis oceanica|type=gene|length=2727bp
CGGGAAGTGGAAGTGTGTTGCAGAAGCCTTAGCACAAAGCTGGTCGACAA
GTCCTTATTCTTTCTTTTCTGCATTGCTGGCGTGGTTTAGGGGTCCACCG
TGTACAAAGAATACTCGCAGTGCGCTTGTACTGGGCCTGGTATTCATCTT
TTGTGTCAATTGGCAGCAAATAAGTGGTCGTTCGTAACCTTCTCGCTTCC
TCTGGCAGCAGGCACCAAGGCACACCCCGCGCTCTCCACTACACCACGCA
TGCACACACAACCACCTTCACCTCACGCACATCAGCACACGCCAATGTGC
GCAGTGCCCACGTCCGTTTCCTTGCATTTACTGACTCAGTGCCTTGGGGT
CTGAAGCGTTCCGGCCGCCCCTCATTTCATGCCTCCCGTCCCGCCTTCGC
ACGTCTGACTAAGTCCCCTGCACACACAACATACAGAACTCCCACTACCA
GTACCACCGGCTACCATGCCCCTCACCGAGCACACCAACGTGGCCCCAGT
GCCCGAGGACCTGGCTGCGACCATGGAGCAGAAATTGTCCCTGGCCAGCA
AGAGCGCCGCCGCCGCCCTGCCGGACGAAGAGCTCGTGCTTAAGCCTTCT
GAGATGAAGCTGCGTGAGCTAGCAGGCGAGATGGACAACGAGCTCCTCCT
AAAGGATAATCCGGGCCGCTATGTCATCTTCCCCATTCAGCACCAGGATg
tacgtattgacagacggaggtggtagtgggggggggggctaattgccgtg
tgccttgttttcccgccctcttctgcgggtgtgtgtgtctgccttaggtc
catcttgcccagtattggcattggcagcacagcaacaacctggcagggca
agcttcctgctgtgtttaccgctgtatctgcagtgtctattgctcaagtt
gtttcccgccttctgtggtctgtggagggaggctcgtgcctcggcatgcg
cagcctccctccctcctctccatgcctgccgcgccagcaccatcatttat
gcgtaccttctcgacaggaggcaggcagcaagtgtgtgatgaaatggaga
tgtataggttctgctgctcgctttctgctgctttcctgcccaatactctc
ggtccccacttaccatcacttccctccttccctccctcccctcctcccac
ctttcccccggcaccaccacagATCTGGGACATGTACAAGCAAGCTGAGG
CCTCTTTCTGGACGGCGGAGGAGCTGGACCTGGCCCACGACAAGACTGAC
TGGGAGAAGCTTTCCGACAAGGAGCGTCATTTCGTCTCGCACGTCCTCGC
CTTCTTCGCCGCGTCCGATGGGATCGTTAACGAAAACCTGGCCTTGAACT
TCTCCAACGAGATTCAGCTGCCGgtgcgtgctacggatctatcgtttgat
tgagtcatgaccccacccccctccctctttctgtgttggcgtcttcgtcg
ttgtctcactcccacctccccctccttccctccttcccgcgctccccccc
cacctcgactgcacagGAGGCCCGCTGCTTCTACGGCTTCCAGATAGCCA
TCGAGAACATCCACAGCGAGGTATACTCCCTCCTCATCGACACGTACATC
AAGAACGGTCAAGAGAAGCACAAGCTCCTCAATGCCATTGATACTGTGCC
TTGTGTCCGTCGGAAGGCGCAGTGGGCCCTCAGGTGGTGCGACCGGAAGT
ACGCCTCTTTCGCCGAGCGCCTGATTGCGTTTGCGGCCGTGGAAGGTATA
TTTTTCAGTGGGTCGTTCTGCTCGATATTCTGGCTGAAGAAGAGGGGTTT
GATGCCGgtaggtggggagtggggaggggagggggaagggagggagaaca
gtaaggaaggagggaaggcgggaaggagggagggctgaattgacgacctt
ttttaccgagctgtcttgttttcaatgtatgtatgaatctaaacctttcc
tttctcccctcccccctcccttcctacctcagGGGCTCTCCTTCTCGAAC
GAGCTCATCTCCCGCGACGAGGGTTTGCACTGTGACTTCGCCTGCCTCCT
ATACAGCAAGTGCAGCATCAAGTGCCCGGAGGAGCGTGTGGTGGACATCA
TCAAGGACGCGGTGGCCATCGAGAAGGAATTCATCACCGATGCCCTGCCC
GTGGAGCTGATTGGGATGAATAGgtgagtcctgtctccctccctccctcc
ctttctctttcccgccctccctcccaccctaagggtttaccgaggaggct
gcccctgccgtatagatcacttttcctcctcaccctccctctctccctcc
ctccctcctttatagCCGCCTCATGTGCGACTACATCGAGTTCTGCGCCG
ACCGGCTCCTTTTGTCGTTGGGCTGCTCCAAGGCGTACCATACCCGGAAC
CCGTTTGACTGGATGGACCTCATCTCCTTGCAGgtaggaagggagggagg
gaggaatggaaagaagggagggcgtgaaggagtgcctgtttcgtattcca
tactgccgaactccgaggcaacttacccaccaccccgtttctctttccct
ccctccctccctccctccctccccccacagGGCAAGACCAACTTTTTCGA
GAAGCGCGTGGGGGAGTACGCGAAAAGCGGCGTCGGTGGAAATGTTGAGG
ACCAGGTTTTCTCTCTGGAGGCCGAGTTCTAAACCTCCTTTCTTTCCTTG
CTCCCCTCCCTCCCTCCCTCCCTCCCT

protein sequence of NO04G04660.1

>NO04G04660.1-protein ID=NO04G04660.1-protein|Name=NO04G04660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPLTEHTNVAPVPEDLAATMEQKLSLASKSAAAALPDEELVLKPSEMKLR
ELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAH
DKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCF
YGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWAL
RWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNEL
ISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVE
LIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNF
FEKRVGEYAKSGVGGNVEDQVFSLEAEF*

Synonyms

Publications