NO04G04490, NO04G04490 (gene) Nannochloropsis oceanica

Overview
NameNO04G04490
Unique NameNO04G04490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr4:1217450..1218268 +

Link to JBrowse

Properties
Property NameValue
DescriptionIron-sulfur protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1217450..1218268 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035903HesB-like_dom_sf
IPR000361FeS_biogenesis
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005198structural molecule activity
Homology
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BLAST of NO04G04490 vs. NCBI_GenBank
Match: CCA27067.1 (ironsulfur cluster assembly protein putative [Albugo laibachii Nc14])

HSP 1 Score: 141.7 bits (356), Expect = 3.300e-30
Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 0 
Query:  153 SPSYPPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            SP     RR    PL++T+ A  RI+EL+ +K P  +G+RLG + RGCNGLSYTMNY + +   +EEV   GV VFVEP AL HVVGT MDF  + L+ EF F NPNAKGSCGCGESFNV
Sbjct:   36 SPKNERWRRELPPPLKITNAAADRIRELMKNK-PEALGIRLGVRTRGCNGLSYTMNYADRKAPLEEEVKDKGVCVFVEPKALFHVVGTTMDFHTSPLASEFVFENPNAKGSCGCGESFNV 154
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BLAST of NO04G04490 vs. NCBI_GenBank
Match: OQR87573.1 (iron-sulfur cluster assembly protein [Achlya hypogyna])

HSP 1 Score: 141.7 bits (356), Expect = 3.300e-30
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0 
Query:  157 PPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFN 272
            P  RR   AP+ LT  A  RIKELL +K P  +G+R+G + RGC+GLSYTMNY   + K +EEV   GV VFVEP AL H+VGT MD++ T +S EFTF NPNAKG+CGCGESFN
Sbjct:   17 PRVRREMPAPIILTQAAADRIKELLENK-PEAIGLRIGVRTRGCSGLSYTMNYATEKAKLEEEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFN 130
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BLAST of NO04G04490 vs. NCBI_GenBank
Match: KUF79047.1 (Iron-sulfur cluster assembly 1 [Phytophthora nicotianae] >KUF96193.1 Iron-sulfur cluster assembly 1 [Phytophthora nicotianae])

HSP 1 Score: 141.4 bits (355), Expect = 4.300e-30
Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:  170 TDRAVARIKELLASKGPSVVGVRLGTKKR----------GCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            TD A  RIKELLA+K P  +G+RLG K R          GCNGLSYTMNY + + K +EEVT  GV VFVEP AL HVVGT MDF+ T +S EF F NPNAKGSCGCGESFNV
Sbjct:   71 TDAAAERIKELLANK-PDAIGIRLGVKTRTKCNGRERCGGCNGLSYTMNYADKKEKMEEEVTKNGVRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 182
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BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_005824743.1 (hypothetical protein GUITHDRAFT_154876 [Guillardia theta CCMP2712] >CAH25346.1 Fe-S assembly protein 1 [Guillardia theta] >EKX37763.1 hypothetical protein GUITHDRAFT_154876 [Guillardia theta CCMP2712])

HSP 1 Score: 141.0 bits (354), Expect = 5.600e-30
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 0 
Query:  157 PPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVG-GVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            P  RR R A L LT+RA  R+ EL+ASK PS  GVRLG + RGCNGLSYTMNY +  PK D+ V  G  + V+V+P A+M+++G+ MDF E  +  EF F NPNAKGSCGCGESFNV
Sbjct:  121 PRARRPRKAVLTLTERAKERLAELMASKSPSPAGVRLGVRTRGCNGLSYTMNYVDEPPKLDDVVEAGDNIKVYVDPKAVMYLLGSVMDFVEDTVRAEFVFQNPNAKGSCGCGESFNV 237
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_008610263.1 (hypothetical protein SDRG_06272 [Saprolegnia diclina VS20] >EQC36157.1 hypothetical protein SDRG_06272 [Saprolegnia diclina VS20])

HSP 1 Score: 140.6 bits (353), Expect = 7.300e-30
Identity = 69/115 (60.00%), Postives = 84/115 (73.04%), Query Frame = 0 
Query:  157 PPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFN 272
            P  RR   AP+ LT  A  RIKELL ++ P  +G+R+G + RGC+GLSYTMNY   + KF+EEV   GV VFVEP AL H+VGT MD++ T +S EFTF NPNAKG+CGCGESFN
Sbjct:   17 PRVRREVPAPIILTQGAADRIKELLENQ-PDAIGLRIGVRTRGCSGLSYTMNYATEKIKFEEEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFN 130
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: CCI46195.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 137.5 bits (345), Expect = 6.200e-29
Identity = 66/106 (62.26%), Postives = 77/106 (72.64%), Query Frame = 0 
Query:  167 LQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            L+ T+ A  RI++L+A K P  VG+RLG + RGCNGLSYTMNY + +   +EEV   GV VFVEP AL HVVGT MDF  + L  EF F NPNAKGSCGCGESFNV
Sbjct:  486 LERTEAAADRIRDLMAKK-PEAVGIRLGVRTRGCNGLSYTMNYADRKAPMEEEVKDKGVCVFVEPKALFHVVGTTMDFHTSPLGSEFVFENPNAKGSCGCGESFNV 590
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: OQS02239.1 (iron-sulfur cluster assembly protein [Thraustotheca clavata])

HSP 1 Score: 136.7 bits (343), Expect = 1.100e-28
Identity = 68/118 (57.63%), Postives = 84/118 (71.19%), Query Frame = 0 
Query:  157 PPTRRTR---AAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFN 272
            P TRR R    AP+ LT  A  RIK LL +K P  +G+R+G + RGC+G+SYTMNY   + K ++EV   GV VFVEP AL H+VGT MD++ T +S EFTF NPNAKG+CGCGESFN
Sbjct:   13 PKTRRVRREMPAPIILTQAAADRIKVLLQNK-PEAIGLRIGVRTRGCSGMSYTMNYATEKAKMEDEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFN 129
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: OEU09553.1 (hypothetical protein FRACYDRAFT_173634 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 0 
Query:  157 PPTRRTRAA--PLQLTDRAVARIKELL-ASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            P  RRT     P+ +T+RA  RIKE+L        +G+RLG K+RGCNGLSYT+NY   +P+ D E+   GVTVFVEP AL  VVGT MD+EE+ELS EFTF NPN+KG CGCGESF V
Sbjct:   81 PRRRRTLKTKDPIVVTERAAIRIKEILQGDNAQGSIGIRLGVKRRGCNGLSYTLNYAFEKPEKDLEMDSSGVTVFVEPMALFSVVGTVMDWEESELSSEFTFTNPNSKGECGCGESFTV 199
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_005790412.1 (iron-sulfur cluster assembly protein [Emiliania huxleyi CCMP1516] >EOD37983.1 iron-sulfur cluster assembly protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 134.4 bits (337), Expect = 5.200e-28
Identity = 69/122 (56.56%), Postives = 86/122 (70.49%), Query Frame = 0 
Query:  158 PTRRTR---AAPLQLTDRAVARIKELLASKGPSVVG------VRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESF 271
            P RR+R    AP+QLT+ A  RIKELL  +  S  G      +R+G K RGC+G+SYTMNY   + K DEEV   GVTV+++ +ALMH+VGT MD+ E +LS EF FHNPNA+GSCGCGESF
Sbjct:   21 PRRRSRLALRAPIQLTETAAERIKELLDRRRESGGGDDGPAALRVGVKTRGCSGMSYTMNYATEKKKLDEEVVEHGVTVWIDSAALMHIVGTTMDYVEDDLSAEFIFHNPNAEGSCGCGESF 142
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_005642998.1 (iron-sulfur cluster assembly protein IscA [Coccomyxa subellipsoidea C-169] >EIE18454.1 iron-sulfur cluster assembly protein IscA [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 133.7 bits (335), Expect = 8.900e-28
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 0 
Query:  161 RTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            R R AP+ LTD A  RIK LL  +      ++LG K RGCNGL+YT+NY +T+ KFDE V   GV + +EP+ALMHV+GT MD+ E  +  EFTF+NPN+KG CGCGESF V
Sbjct:   19 RLRKAPIVLTDAAAERIKTLLEKRNKEF--LKLGVKTRGCNGLAYTLNYADTKNKFDEVVDEKGVRILIEPNALMHVLGTTMDYVEDRIKAEFTFYNPNSKGECGCGESFTV 128
The following BLAST results are available for this feature:
BLAST of NO04G04490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA27067.13.300e-3058.33ironsulfur cluster assembly protein putative [Albu... [more]
OQR87573.13.300e-3060.00iron-sulfur cluster assembly protein [Achlya hypog... [more]
KUF79047.14.300e-3063.72Iron-sulfur cluster assembly 1 [Phytophthora nicot... [more]
XP_005824743.15.600e-3058.97hypothetical protein GUITHDRAFT_154876 [Guillardia... [more]
XP_008610263.17.300e-3060.00hypothetical protein SDRG_06272 [Saprolegnia dicli... [more]
CCI46195.16.200e-2962.26unnamed protein product [Albugo candida][more]
OQS02239.11.100e-2857.63iron-sulfur cluster assembly protein [Thraustothec... [more]
OEU09553.11.400e-2858.82hypothetical protein FRACYDRAFT_173634 [Fragilario... [more]
XP_005790412.15.200e-2856.56iron-sulfur cluster assembly protein [Emiliania hu... [more]
XP_005642998.18.900e-2856.25iron-sulfur cluster assembly protein IscA [Coccomy... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009342NSK009342Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04490.1NO04G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100199g3gene1769Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04490.1NO04G04490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04490 ID=NO04G04490|Name=NO04G04490|organism=Nannochloropsis oceanica|type=gene|length=819bp
ATGGCTAAGTCCACGTCCCGCACCGCCGCGGCGCTGATCCAGAGGGTGAT
AACGCAGGGCATGAGAGGAGGACGGGGAGTTTCGTCCATCTCTTCGTCTC
TTGCGTGCGCGAGCGCTGTAGGAATGGCCTCTCTAGCAGCAACGTCCGCT
GCCGCCTCCTCCTTGGCAATGGCCCGAGCACCCACGACAACACCAGCGGT
GACAATAGTAGGGCAGCAGCAAAGAGCTTGGGCGTCCACCGTGGCCGCCG
TCATCAGCCACGACAACATGTCTGGGGCGAGCCAGCAGCACCAGCAACAT
GAGCACCAAGCACCTTCATCATTCCCATCTTCCACCGGCCCGCAACCCAG
AACAAACACCGCCACTGCCACCGCGACCGCTTCTTCATCCTCTCAATCCC
TTCGTTATGACGACAATAGCAACAGCAGCACGACCGGCCCTACTCCCCCC
AACTCCTCCCCCTCGTACCCTCCTACCCGTCGCACCCGCGCAGCCCCCCT
CCAGCTCACGGATCGGGCCGTCGCTCGTATCAAAGAGCTCCTCGCCTCTA
AAGGCCCCAGCGTGGTGGGGGTGCGTCTGGGCACGAAAAAGAGGGGTTGC
AATGGGTTGTCTTACACGATGAACTACACCGAGACCCGGCCGAAATTTGA
CGAGGAGGTGACTGTGGGAGGGGTGACTGTGTTCGTGGAGCCCTCTGCAT
TAATGCACGTGGTCGGCACGAGAATGGACTTTGAAGAGACGGAGCTGTCG
AGAGAGTTTACATTTCACAATCCAAACGCGAAGGGCTCGTGTGGGTGTGG
GGAGAGCTTTAATGTTTAA
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protein sequence of NO04G04490.1

>NO04G04490.1-protein ID=NO04G04490.1-protein|Name=NO04G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MAKSTSRTAAALIQRVITQGMRGGRGVSSISSSLACASAVGMASLAATSA
AASSLAMARAPTTTPAVTIVGQQQRAWASTVAAVISHDNMSGASQQHQQH
EHQAPSSFPSSTGPQPRTNTATATATASSSSQSLRYDDNSNSSTTGPTPP
NSSPSYPPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGC
NGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELS
REFTFHNPNAKGSCGCGESFNV*
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Synonyms
Publications