NO04G04450, NO04G04450 (gene) Nannochloropsis oceanica

Overview
NameNO04G04450
Unique NameNO04G04450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3513
Alignment locationchr4:1208284..1211796 -

Link to JBrowse

Properties
Property NameValue
DescriptionUDP-glucuronate decarboxylase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1208284..1211796 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR001509Epimerase_deHydtase_N
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: XP_005855230.1 (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526] >EKU21132.1 UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 560.5 bits (1443), Expect = 6.300e-156
Identity = 278/359 (77.44%), Postives = 307/359 (85.52%), Query Frame = 0 
Query:  235 GSDGRLGLRKNQL-SYYPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPKP 576
            G   R   R+ QL   YP TATLSE +R+R++VTGGAGFVGSHLVDRLM EGHEVIV+DNMFTGRKKNVAHWIGHP+FMLIVHDVVEPI+LE                 YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQ+HPQPESYWGNVNPIGPRACYDEGKRVAETMMYAY +QS+     ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQG +ITIYGEG QTRSFQYV+DLV GL KLMNSDY +PVNLGNP+EYTVKDFALLVKELV  + S IVH+P TKDDP KRKPDI VA +VLGWQP+V VR+GL+KTV YFR EL++TGE++PTGP+AT+PKP
Sbjct:  135 GDGERTVSRQEQLGQLYPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQSS-----VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 488
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: CBJ48392.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 498.4 bits (1282), Expect = 3.000e-137
Identity = 246/348 (70.69%), Postives = 283/348 (81.32%), Query Frame = 0 
Query:  250 YPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPKPHSEDE 581
            +P TA LSE  R RV+VTGGAGFVGSHLVD LM+ GH+VIV+DN FTGR+KNV HWIGHP+F LI HDVVEPI LE                 YNPIKTIKTST GTLNMLGLAKR  ARMLLTSTSEVYGDP+ HPQ E+YWGNVNPIGPRACYDEGKRVAETMMYAY +Q     GEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQA+QG +ITIYG+G+QTRSFQYVDDLV GL+ LMN++Y  PVN+GNPDEYTVKDFA L+K     T S I+ +  TKDDP KRKPDIT+A++ LGW+P VAV+DGL +T++YFR EL +TGE+IPTGP+A+KP+  ++ +
Sbjct:  138 FPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEVYGDPEEHPQRETYWGNVNPIGPRACYDEGKRVAETMMYAYENQ-----GEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQAIQGKDITIYGDGSQTRSFQYVDDLVRGLIALMNNNYSGPVNIGNPDEYTVKDFAELIKSSTEST-SKIIFMDGTKDDPNKRKPDITLAKKELGWEPTVAVKDGLVETIKYFRGELKKTGEIIPTGPDASKPRNFADPD 479
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: XP_002185484.1 (nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1] >EEC42971.1 nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 480.7 bits (1236), Expect = 6.400e-132
Identity = 234/354 (66.10%), Postives = 279/354 (78.81%), Query Frame = 0 
Query:  238 GRLGLRKNQLSYYPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPK 575
            GR  L      Y   T  L + +RK+++VTGGAGFVGSHLVD+LM +G EVIV+DN FTG+KKNVAHW+ HPNF L+VHDV EPI LE                 YNP+KTIKTSTMGTLNMLGLAKRVRA++LLTSTSE+YGDP+VHPQPESYWGNVN IGPR+CYDEGKRVAETMMY+Y++Q+      ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQ  N+TIYGEG QTRSFQYV DLV GL  LMN +Y++PVNLGNP+EY+VKDFA  ++EL   T S I+ LP ++DDP++R+PDIT A+  LGW+PQV V+ GL KT+EYF + L+  GE+IPTGP A KP+
Sbjct:  166 GRQSLPTATTPYIMPTKVLPDHQRKKILVTGGAGFVGSHLVDKLMMDGMEVIVVDNFFTGQKKNVAHWLHHPNFSLVVHDVTEPIQLEVDEIYHLACPASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVRAKILLTSTSEIYGDPKVHPQPESYWGNVNTIGPRSCYDEGKRVAETMMYSYKNQNG-----VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQNKNMTIYGEGKQTRSFQYVTDLVDGLYALMNGNYDLPVNLGNPEEYSVKDFATYIQELTKST-SDIIFLPKSEDDPSQRRPDITTAKRELGWEPQVKVQKGLEKTIEYFARVLESAGEIIPTGPGAAKPE 513
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: XP_002291929.1 (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >EED90780.1 dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 474.6 bits (1220), Expect = 4.600e-130
Identity = 220/339 (64.90%), Postives = 273/339 (80.53%), Query Frame = 0 
Query:  253 TATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPK 575
            T  L ++ RK+++VTGGAGFVGSHLVDRLM EGHEV+V+DN FTGRK NV HW+ HPNF L+ HDV++PI+LE                 YNP+KTIKTSTMGT+NMLGLAKRV+AR+LL STSE+YGDP VHPQPESYWGNV+ IGPRACYDEGKRVAETMMYAY++Q+      + +R+ARIFNTFGPRMHPNDGRVVSNFIIQ+LQ  +ITIYG+GAQTRSFQYVDDL+ GL+KLMN  Y+ PVN+GNPDEY++KDFA  ++++   + S I  LP   DDP++R+PDI+ A+  LGW P+V+V +GL KT+EYF+ E++  GE++PTGP+A KPK
Sbjct:   51 TTRLPDALRKKILVTGGAGFVGSHLVDRLMSEGHEVVVLDNFFTGRKANVEHWLHHPNFSLVRHDVIQPILLEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTINMLGLAKRVKARILLASTSEIYGDPTVHPQPESYWGNVHTIGPRACYDEGKRVAETMMYAYKNQN-----NVSIRIARIFNTFGPRMHPNDGRVVSNFIIQSLQNKDITIYGDGAQTRSFQYVDDLINGLVKLMNGSYDSPVNIGNPDEYSIKDFATKIRDMTN-SKSEIKFLPKVADDPSQREPDISTAKRELGWSPKVSVEEGLKKTIEYFKGEVESAGEIVPTGPDAVKPK 383
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: OEU08397.1 (putative dTDP-glucose 4,6-dehydratase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 461.8 bits (1187), Expect = 3.100e-126
Identity = 221/336 (65.77%), Postives = 268/336 (79.76%), Query Frame = 0 
Query:  258 ESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGE--VIPTGPEATKPK 575
            +S R ++++TGGAGFVGSHLVD+LM+ GHE+IV+DN FTG+KKN+ HW  HPNF +I HD+ EPI+LE                 YNP+KTIKTSTMGTLNMLGLAKRV+AR+LL STSE+YGDP +HPQPESYWGNVN +GPR+CYDEGKRVAETMMYAY++Q+      +EVR+ARIFNTFGPRMHPNDGRVVSNFIIQALQ  +ITIYG+G QTRSFQYV+DLV GL+KLMNSDY+ PVN+GNPDEY++K+FA  +KE+   + S I++LP   DDPT+R PDIT A+  L W PQ  V+ GLAK VEYF+  LD  G+  + PTGPEA+KPK
Sbjct:   85 DSSRLKILITGGAGFVGSHLVDKLMQVGHEIIVLDNFFTGQKKNIEHWTHHPNFTVIRHDITEPILLEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVKARILLASTSEIYGDPNIHPQPESYWGNVNTLGPRSCYDEGKRVAETMMYAYKEQN-----NVEVRIARIFNTFGPRMHPNDGRVVSNFIIQALQNKDITIYGDGNQTRSFQYVNDLVEGLVKLMNSDYDGPVNIGNPDEYSIKNFAEQIKEMTS-SQSKIIYLPKVADDPTQRNPDITTAKAKLNWSPQWHVKAGLAKAVEYFQAVLDMAGDDGIKPTGPEASKPK 414
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: XP_009038566.1 (hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens] >EGB06820.1 hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens])

HSP 1 Score: 456.8 bits (1174), Expect = 9.800e-125
Identity = 228/347 (65.71%), Postives = 268/347 (77.23%), Query Frame = 0 
Query:  250 YPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKEL-DETGEVIPTGPEATKPKPHSE 579
            YP    L ++++ R++VTGGAGFVGS+LVD+LM  GHEV V+DN+FTGRKKN+ HW  HP+F  IV DVVE IMLE                 YNPIKTIKTST GTLNMLGLAKRV ARMLL STSE+YGDP+VHPQ E+YWGNVNPIGPRACYDEGKRVAETMMY+Y  Q       +EVRVARIFNTFG RMHPNDGRVVSNFIIQALQ  +IT+YG+G+QTRSFQ+VDDLV GL  LMNS+Y +PVNLGNPDEYTV  FA  +K+L G + S IV LP T DDP +RKPDIT A+  +GWQP+  V  GLA+T+EYF++EL D  G + PTGP A+KP+P ++
Sbjct:   13 YPPVRKLPQNEKLRILVTGGAGFVGSNLVDKLMRGGHEVTVLDNLFTGRKKNIEHWFNHPHFQFIVGDVVESIMLEVDQIYHLACPASPPHYQYNPIKTIKTSTEGTLNMLGLAKRVNARMLLASTSEIYGDPEVHPQVETYWGNVNPIGPRACYDEGKRVAETMMYSYNRQLG-----VEVRVARIFNTFGRRMHPNDGRVVSNFIIQALQNKDITLYGDGSQTRSFQFVDDLVDGLHALMNSNYSLPVNLGNPDEYTVAGFAETIKKLTG-SRSKIVRLPATTDDPRQRKPDITTAKTHIGWQPKWTVGRGLAETIEYFKRELADMGGSITPTGPLASKPRPRAD 353
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: XP_005823244.1 (hypothetical protein GUITHDRAFT_90059 [Guillardia theta CCMP2712] >EKX36264.1 hypothetical protein GUITHDRAFT_90059 [Guillardia theta CCMP2712])

HSP 1 Score: 454.9 bits (1169), Expect = 3.700e-124
Identity = 220/344 (63.95%), Postives = 268/344 (77.91%), Query Frame = 0 
Query:  242 LRKNQLSYYPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGP 569
            ++   + ++P T TLS  KR R++VTGGAGFVGS+LVDRLME+GHEV V+DNMFTG K N+ HWI HPNF LI HDV +PI LE                 YNPIKTIKTS MGT+NMLGLAKRVRAR+L TSTSEVYGDP  HPQ E+YWG+VNPIGPRACYDEGKRV ETMMYAYRDQ+      ++VRVARIFNTFGPRM+P+DGRVVSNFI+QALQG ++T+YG+G  TRSFQYVDDLVAGLM LM   Y+ PVN+GNPDEYT++ FA L+++L   T+S IVH P T+DDP +R+PDITVA   L W+P+ +V++GL +T+ YF  EL+++GE+   GP
Sbjct:    9 IKSESVFHFPVT-TLSPLKRLRILVTGGAGFVGSNLVDRLMEQGHEVTVLDNMFTGSKSNIQHWISHPNFNLINHDVTDPIHLEVDRIFHLACPASPPHYMYNPIKTIKTSVMGTINMLGLAKRVRARILFTSTSEVYGDPTEHPQKETYWGHVNPIGPRACYDEGKRVGETMMYAYRDQAG-----VDVRVARIFNTFGPRMNPSDGRVVSNFIVQALQGRDLTVYGDGKATRSFQYVDDLVAGLMALMEGSYDRPVNIGNPDEYTIRQFAELIQKLT-KTNSSIVHKPSTQDDPQQRRPDITVASRELAWRPKTSVKEGLRRTIHYFSHELEKSGEIKTVGP 345
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: GAX12776.1 (UDP-glucuronate decarboxylase [Fistulifera solaris])

HSP 1 Score: 453.4 bits (1165), Expect = 1.100e-123
Identity = 221/343 (64.43%), Postives = 265/343 (77.26%), Query Frame = 0 
Query:  249 YYPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPK 575
            Y   TA L +  RK+++VTGG+GFVGSHLVD+LM EGHEVIV+DN FTG+KKN+AHW+ HPNF LIVHDV EPI LE                 YNP+KTIKTS MGTLNMLGLAKRV AR+LL+STSE+YGDP+V PQPESYWG+VN IGPRACYDEGKRVAETMMY+Y+ Q+      +++RVARIFNTFGPRMHPNDGRVVSNFII+ALQ  ++TIYG+G QTRSFQYV DLV GL  LMN+DY  PVNLGNP E+T+ +FA  V+ L   + S I+ LP + DDP +R+PDI  A+  L W+P+V+V +GL KT+EYF   L E GE+IPTGP A KP+
Sbjct:  145 YVMKTAYLPDHHRKKILVTGGSGFVGSHLVDKLMMEGHEVIVVDNFFTGQKKNIAHWLHHPNFSLIVHDVTEPIQLEVDQIYHLACPASPPHYQYNPVKTIKTSVMGTLNMLGLAKRVHARILLSSTSEIYGDPEVSPQPESYWGHVNTIGPRACYDEGKRVAETMMYSYQKQNG-----LDIRVARIFNTFGPRMHPNDGRVVSNFIIEALQNKDMTIYGDGKQTRSFQYVSDLVDGLHALMNNDYTQPVNLGNPSEWTIAEFAEHVQALT-KSSSQIIKLPKSTDDPQQRRPDIQTAKRELDWEPKVSVDEGLKKTIEYFAAVLKEAGEIIPTGPGAAKPE 481
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: GBG32002.1 (UDP-glucose 4-epimerase [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 453.4 bits (1165), Expect = 1.100e-123
Identity = 223/340 (65.59%), Postives = 270/340 (79.41%), Query Frame = 0 
Query:  250 YPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATK 573
            +P T  L  +++KR++VTGGAGFVGSHLVDRLM +GH V  +DN FTGRK+NV  WIGHPNF LI HDVV P M+E                 YNP+KTIKTS  GTLNMLGLAKR +AR+LLTSTSEVYGDP+VHPQ E+Y G V+  GPRACYDEGKRVAETMMYAY+ Q    DG +++RVARIFNTFG  MHP+DGRVVSNFIIQALQG +ITIYG+G QTRSFQYV+DLV+GL+KLMNSDY+ PVNLGNPDEYT+++FA ++ ++VG T S IVHLP T+DDP++RKPDI++A+ VLGW+P+V VR GL +T+EYFR EL+ TG+  P  P+  K
Sbjct:   67 FPPTEKLLTTQQKRILVTGGAGFVGSHLVDRLMRQGHIVYALDNFFTGRKENVEAWIGHPNFELIHHDVVNPYMIEVDQIYNLACPASPPHYQYNPVKTIKTSVEGTLNMLGLAKRTKARVLLTSTSEVYGDPEVHPQSETYHGRVSITGPRACYDEGKRVAETMMYAYKKQ----DG-VDIRVARIFNTFGENMHPDDGRVVSNFIIQALQGKDITIYGDGKQTRSFQYVEDLVSGLVKLMNSDYDGPVNLGNPDEYTIREFAEMIVQMVG-TKSKIVHLPSTQDDPSRRKPDISLAKRVLGWEPKVHVRTGLERTIEYFRHELERTGKFSPIKPDELK 400
[Close]
BLAST of NO04G04450 vs. NCBI_GenBank
Match: GAX11325.1 (UDP-glucuronate decarboxylase [Fistulifera solaris])

HSP 1 Score: 453.0 bits (1164), Expect = 1.400e-123
Identity = 221/343 (64.43%), Postives = 265/343 (77.26%), Query Frame = 0 
Query:  249 YYPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPK 575
            Y   TA L +  RK+++VTGG+GFVGSHLVD+LM EGHEVIV+DN FTG+KKN+AHW+ HPNF LIVHDV EPI LE                 YNP+KTIKTS MGTLNMLGLAKRV AR+LL+STSE+YGDP+V PQPESYWG+VN IGPRACYDEGKRVAETMMY+Y+ Q+      +++RVARIFNTFGPRMHPNDGRVVSNFII+ALQ  ++TIYG+G QTRSFQYV DLV GL  LMN+DY  PVNLGNP E+T+ +FA  V+ L   + S I+ LP + DDP +R+PDI  A+  L W+P+V+V +GL KT+EYF   L E GE+IPTGP A KP+
Sbjct:  144 YVMKTAYLPDHHRKKILVTGGSGFVGSHLVDKLMMEGHEVIVVDNFFTGQKKNIAHWLHHPNFSLIVHDVTEPIQLEVDQIYHLACPASPPHYQYNPVKTIKTSVMGTLNMLGLAKRVHARILLSSTSEIYGDPEVSPQPESYWGHVNTIGPRACYDEGKRVAETMMYSYQKQNG-----LDIRVARIFNTFGPRMHPNDGRVVSNFIIEALQNKDMTIYGDGKQTRSFQYVSDLVDGLHALMNNDYTQPVNLGNPSEWTIAEFAEHVQALT-KSSSQIIKLPKSTDDPQQRRPDIQTAKRELDWEPKVSVDEGLKKTIEYFAAVLREAGEIIPTGPGAAKPE 480
The following BLAST results are available for this feature:
BLAST of NO04G04450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855230.16.300e-15677.44UDP-glucuronate decarboxylase [Nannochloropsis gad... [more]
CBJ48392.13.000e-13770.69conserved unknown protein [Ectocarpus siliculosus][more]
XP_002185484.16.400e-13266.10nad-dependent epimerase/dehydratase [Phaeodactylum... [more]
XP_002291929.14.600e-13064.90dtdp-glucose 4,6-dehydratase [Thalassiosira pseudo... [more]
OEU08397.13.100e-12665.77putative dTDP-glucose 4,6-dehydratase [Fragilariop... [more]
XP_009038566.19.800e-12565.71hypothetical protein AURANDRAFT_28689 [Aureococcus... [more]
XP_005823244.13.700e-12463.95hypothetical protein GUITHDRAFT_90059 [Guillardia ... [more]
GAX12776.11.100e-12364.43UDP-glucuronate decarboxylase [Fistulifera solaris... [more]
GBG32002.11.100e-12365.59UDP-glucose 4-epimerase [Aurantiochytrium sp. FCC1... [more]
GAX11325.11.400e-12364.43UDP-glucuronate decarboxylase [Fistulifera solaris... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009347NSK009347Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04450.1NO04G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668901gene_2232Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g174gene1772Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04450.1NO04G04450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04450 ID=NO04G04450|Name=NO04G04450|organism=Nannochloropsis oceanica|type=gene|length=3513bp
ATGTTATCAATCGGCACTGGTACCATGCTGAGGCTGGCAGgttcggggtt
tggcgaggacttgtgcccgtccccggaggccaaccgaaacggcgaaccgg
gccatgcctcccgagacgttgccgattcaaacgcccacccatccttttcc
gcacccacatcctcctaccatacgcacgtccaacgcgttcgatggacatg
cataccaacctaacatctcctaatagcctttcccacctcatctttgcttc
ttaccttcccccagaaaagttgccgcggcccaagcacccatcattttcct
tgccctgctcggcttcttgacttctcatcatcactagCCAGTCCGCCTGC
GCCCTCGCAATTATCATCGTCGTCACGTCCTGATCGTCGTCGTCGgtgcg
tgtttgctccttaaaagtgccgtcgttgtcatcttccagggcacccagcc
gtatcaacatcatcagcagCTTTAGCAGCAGGCGTCGGGTCGCACCGCGC
TCTCCACCGGACACCATTGCGCCATTGCCCCACCTATCCACGCGTCAGAG
TAGCAGCCACGAAGAGGAGGAGGACCAGGCCGCGTCACCACACTACCGCG
CCCACCACGCTACCTCAGGTGGAAGCAACGACGGAAACGCGCTTCTATTG
AGTGGTGgtacgttggtgtccgggattgtccctccctccacccctccatc
gctccccttctgtattccaccctttcctccctttccgcatttcatctttc
cgggctctcaactgccaccactttctctctcacacaaccaccaaaatttg
ccacctcacagacaactgtttatactcctttcacagtgcttggcgtctca
tttttttcactttcccaccaaccgtactcccaatcaccccaccccatcac
ctagAGCCAAATATGAGCCCGCATCATCATCGCAACAGCCCCGGCAGCGC
CAATGCAGGCTTCTTCCACAGCACTAAAGTACGCGCCGCGGGCATCATGC
TTTCCGTTGGACTAGCCATGTTTTTCTCTGTCACATACCTGTGGAATGAT
GCCAATGCTGTGGATGCGGGTGCTGTTTCCTTCCCTGGTGCCGCTGCCTC
TGGAATTTCTATGCTGCAAGCACAGCAGCAGGCAATGTCGGAGGAAATGC
GAGAGGAGATTAAAAAGGAGGTCCGGGCCGAGATTCTGGCAGCTATGGCC
GTGGAAAACAAGAAGAGGGAAGAGCTGCTACAAGCACAGAAGGAGCAAGA
GCAGCACCAGCAGGAACAGCAGAAGGACGTGGCTGCTGGTCAGGACGGGA
AGAGCAACAGCAGTAAGGCGGGTTCGGACGGCCGCTTGGGCTTGAGAAAG
AACCAGCTGTCATATTACCCGTTCACAGCGACGCTTAGTGAGAGCAAGAG
GAAGAGGGTGGTGGTGACGGGAGGGGCGGGTTTCGTGGGATCGCATTTGG
TGGACCGACTGATGGAGGAAGGGCACGAGGTCATCGTGATTGACAACATG
TTCACGGGGCGGAAGAAGAATGTGGCCCATTGGATCGGTCACCCGAACTT
CATGTTGATCGTCCACGACGTCGTGGAGCCCATCATGCTGGAGgtggatc
agatctaccacctggcctgccctgcctccccccccattatcagTACAACC
CGATCAAGACCATCAAGACGAGCACGATGGGGACGTTGAACATGCTGGGC
CTGGCCAAGCGGGTGCGGGCGCGGATGCTCTTGACGTCGACGAGTGAGGT
GTATGGAGACCCGCAGgtacgtacacatgcttgagccttcccttcctccc
tccctccctccctccctccctccctccctccctctctccctccctccctc
cctccctccctccctctctccctctctccctctctccctccctccctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctcctttgccctatctggttttcagggacagat
gtttccaggtgacttttagcaccagaaggcttctgctcaccatcatcacg
gctcttgtgcgcatttgtttcactcctccattcctccctccctacccccc
cctccctagGTCCATCCCCAACCAGAGAGCTATTGGGGCAACGTGAACCC
CATCGGTCCTCGTGCGTGTTATGATGAAGGGAAACGCGTGGCCGAGACCA
TGATGTACGCGTATAGAGACCAGAGCGCGCAGGGGGATGGGGAGATGGAA
GTGAGGGTGGCGAGGATATTCAATACGTTTGGGCCTCGGATGCACCCGAA
TGACGGGCGCGTGGTTAGgtgaggaggaagggagaggatgagggagggag
ggggaggatgagggagggaggggaggagggagggagggggaggatgaggg
agggaggggaggaggaagagagggaatgagggagggagggagggagggat
ggactgcatttatccaagagggatgggaatagacggctcaaagacaagga
ctcgctcactcaccgcctctgttcctcttgtccccccccctcccccctcc
ctcctttttctcatatcctattctctcgcatggttttgaaatcttctctt
agTAATTTCATCATCCAAGCTTTGCAAGGCAACAACATTACAATTTATGG
TGAAGGGGCACAGACGCGTTCGTTCCAGTATGTGGATGACCTCGTCGCTG
GTTTAATGAAGCTGATGAATAGgtagggggggttggaggcagggagggag
gagagagcgaaggaggcgaacagacgcgcttgggtgtgcggtgtagatcc
tttttcggtctagtaaatcaatttatccctcctcccctccctccttcctt
cttccagTGACTACGAGATGCCGGTCAATCTGGGAAACCCCGACGAGTAC
ACTGTCAAAGACTTCGCCTTGCTTGTCAAGgtgaggcgggagggagggag
agagggagggagagaggggaggaaaaaatgtgttgccgtaaatccttact
ggcgcatccggtattgcctgagtaccgcaacgccataagagattaatttt
ccgttctttgtacatatatatttattcaattttttcctccccgcccttcc
cttcctcctttcctcctttagGAGCTCGTGGGCCCCACCCACAGTCACAT
TGTCCACCTCCCCCCTACGAAGGACGACCCCACCAAACGCAAGCCCGACA
TCACGGTCGCTCAGGAGGTGCTGGGATGGCAGCCGCAGGTAGCCGTTAGG
GATGGCCTAGCCAAGACCGTGGAGTATTTTAGAAAGGAGTTGGACGAGAC
Ggtgcgttttgatttttggagctttttcttctcgtttccccttcattcat
ttattaatcaatcagttatttgctgtatgtgactccataaatgtatccat
ccagtcactcattgtatttcattctatcacactcgttgtagGGTGAGGTT
ATTCCCACCGGCCCCGAGGCGACCAAGCCCAAGCCCCACAGCGAGGACGA
AGCACGCCTGTGA
back to top

protein sequence of NO04G04450.1

>NO04G04450.1-protein ID=NO04G04450.1-protein|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MLSIGTGTMLRLAASPPAPSQLSSSSRPDRRRRFSSRRRVAPRSPPDTIA
PLPHLSTRQSSSHEEEEDQAASPHYRAHHATSGGSNDGNALLLSGEPNMS
PHHHRNSPGSANAGFFHSTKVRAAGIMLSVGLAMFFSVTYLWNDANAVDA
GAVSFPGAAASGISMLQAQQQAMSEEMREEIKKEVRAEILAAMAVENKKR
EELLQAQKEQEQHQQEQQKDVAAGQDGKSNSSKAGSDGRLGLRKNQLSYY
PFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKK
NVAHWIGHPNFMLIVHDVVEPIMLEYNPIKTIKTSTMGTLNMLGLAKRVR
ARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYA
YRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITI
YGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVK
ELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTV
EYFRKELDETGEVIPTGPEATKPKPHSEDEARL*
back to top
Synonyms
Publications