NO04G04450.1, NO04G04450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04450.1
Unique NameNO04G04450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr4:1208284..1211796 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1208284..1211796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G04450.1 vs.
Match: XP_005855230.1 (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526]; EKU21132.1 UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 573.9 bits (1478), Expect = 5.500e-160
Identity = 322/508 (63.39%), Postives = 373/508 (73.43%), Query Frame = 0
Query:   97 PNMSPHHHRNSPGSANAGFFHSTKVRAAGIMLSVGLAMFFSVTYLWNDANAVDAGAVSF----PGAAASGISMLQAQQQAM--------SEEMREEIKKEVRAEILAAMAVENKKREELLQAQKEQEQHQQEQQKDVAAGQDGKSNSSKAGSDGRLGLRKNQLSYYPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPKP 576
            P MS H  R+  GS+     +S+ VR A + +   LA+  SV Y++     V   + S           G+ MLQ   + +        SEE+R  IK+EVRAEILAAMA E KKR       +++  H +   +      DG+   S+    G+L         YP TATLSE +R+R++VTGGAGFVGSHLVDRLM EGHEVIV+DNMFTGRKKNVAHWIGHP+FMLIVHDVVEPI+LE                 YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQ+HPQPESYWGNVNPIGPRACYDEGKRVAETMMYAY +QS+     ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQG +ITIYGEG QTRSFQYV+DLV GL KLMNSDY +PVNLGNP+EYTVKDFALLVKELV  + S IVH+P TKDDP KRKPDI VA +VLGWQP+V VR+GL+KTV YFR EL++TGE++PTGP+AT+PKP
Sbjct:    9 PRMS-HSFRHWFGSSTGHRLNSS-VRTAFLFIVGALALVISVNYVFGREPLVLRASSSHVRGGDEGGNGGMQMLQHDGRQVESHKPVLVSEELRRTIKEEVRAEILAAMAEEEKKR-------RQEAPHARPGTRG-----DGERTVSRQEQLGQL---------YPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQSS-----VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 488          
The following BLAST results are available for this feature:
BLAST of NO04G04450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855230.15.500e-16063.39UDP-glucuronate decarboxylase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04450NO04G04450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04450.1NO04G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04450.1.cds1NO04G04450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds2NO04G04450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds3NO04G04450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds4NO04G04450.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds5NO04G04450.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds6NO04G04450.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds7NO04G04450.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds8NO04G04450.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds9NO04G04450.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04450.1.cds10NO04G04450.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04450.1 ID=NO04G04450.1|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
ATGTTATCAATCGGCACTGGTACCATGCTGAGGCTGGCAGCCAGTCCGCC
TGCGCCCTCGCAATTATCATCGTCGTCACGTCCTGATCGTCGTCGTCGCT
TTAGCAGCAGGCGTCGGGTCGCACCGCGCTCTCCACCGGACACCATTGCG
CCATTGCCCCACCTATCCACGCGTCAGAGTAGCAGCCACGAAGAGGAGGA
GGACCAGGCCGCGTCACCACACTACCGCGCCCACCACGCTACCTCAGGTG
GAAGCAACGACGGAAACGCGCTTCTATTGAGTGGTGAGCCAAATATGAGC
CCGCATCATCATCGCAACAGCCCCGGCAGCGCCAATGCAGGCTTCTTCCA
CAGCACTAAAGTACGCGCCGCGGGCATCATGCTTTCCGTTGGACTAGCCA
TGTTTTTCTCTGTCACATACCTGTGGAATGATGCCAATGCTGTGGATGCG
GGTGCTGTTTCCTTCCCTGGTGCCGCTGCCTCTGGAATTTCTATGCTGCA
AGCACAGCAGCAGGCAATGTCGGAGGAAATGCGAGAGGAGATTAAAAAGG
AGGTCCGGGCCGAGATTCTGGCAGCTATGGCCGTGGAAAACAAGAAGAGG
GAAGAGCTGCTACAAGCACAGAAGGAGCAAGAGCAGCACCAGCAGGAACA
GCAGAAGGACGTGGCTGCTGGTCAGGACGGGAAGAGCAACAGCAGTAAGG
CGGGTTCGGACGGCCGCTTGGGCTTGAGAAAGAACCAGCTGTCATATTAC
CCGTTCACAGCGACGCTTAGTGAGAGCAAGAGGAAGAGGGTGGTGGTGAC
GGGAGGGGCGGGTTTCGTGGGATCGCATTTGGTGGACCGACTGATGGAGG
AAGGGCACGAGGTCATCGTGATTGACAACATGTTCACGGGGCGGAAGAAG
AATGTGGCCCATTGGATCGGTCACCCGAACTTCATGTTGATCGTCCACGA
CGTCGTGGAGCCCATCATGCTGGAGTACAACCCGATCAAGACCATCAAGA
CGAGCACGATGGGGACGTTGAACATGCTGGGCCTGGCCAAGCGGGTGCGG
GCGCGGATGCTCTTGACGTCGACGAGTGAGGTGTATGGAGACCCGCAGGT
CCATCCCCAACCAGAGAGCTATTGGGGCAACGTGAACCCCATCGGTCCTC
GTGCGTGTTATGATGAAGGGAAACGCGTGGCCGAGACCATGATGTACGCG
TATAGAGACCAGAGCGCGCAGGGGGATGGGGAGATGGAAGTGAGGGTGGC
GAGGATATTCAATACGTTTGGGCCTCGGATGCACCCGAATGACGGGCGCG
TGGTTAGTAATTTCATCATCCAAGCTTTGCAAGGCAACAACATTACAATT
TATGGTGAAGGGGCACAGACGCGTTCGTTCCAGTATGTGGATGACCTCGT
CGCTGGTTTAATGAAGCTGATGAATAGTGACTACGAGATGCCGGTCAATC
TGGGAAACCCCGACGAGTACACTGTCAAAGACTTCGCCTTGCTTGTCAAG
GAGCTCGTGGGCCCCACCCACAGTCACATTGTCCACCTCCCCCCTACGAA
GGACGACCCCACCAAACGCAAGCCCGACATCACGGTCGCTCAGGAGGTGC
TGGGATGGCAGCCGCAGGTAGCCGTTAGGGATGGCCTAGCCAAGACCGTG
GAGTATTTTAGAAAGGAGTTGGACGAGACGGGTGAGGTTATTCCCACCGG
CCCCGAGGCGACCAAGCCCAAGCCCCACAGCGAGGACGAAGCACGCCTGT
GA
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protein sequence of NO04G04450.1

>NO04G04450.1-protein ID=NO04G04450.1-protein|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MLSIGTGTMLRLAASPPAPSQLSSSSRPDRRRRFSSRRRVAPRSPPDTIA
PLPHLSTRQSSSHEEEEDQAASPHYRAHHATSGGSNDGNALLLSGEPNMS
PHHHRNSPGSANAGFFHSTKVRAAGIMLSVGLAMFFSVTYLWNDANAVDA
GAVSFPGAAASGISMLQAQQQAMSEEMREEIKKEVRAEILAAMAVENKKR
EELLQAQKEQEQHQQEQQKDVAAGQDGKSNSSKAGSDGRLGLRKNQLSYY
PFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKK
NVAHWIGHPNFMLIVHDVVEPIMLEYNPIKTIKTSTMGTLNMLGLAKRVR
ARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYA
YRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITI
YGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVK
ELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTV
EYFRKELDETGEVIPTGPEATKPKPHSEDEARL*
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mRNA from alignment at chr4:1208284..1211796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04450.1 ID=NO04G04450.1|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3513bp|location=Sequence derived from alignment at chr4:1208284..1211796- (Nannochloropsis oceanica)
ATGTTATCAATCGGCACTGGTACCATGCTGAGGCTGGCAGGTTCGGGGTT TGGCGAGGACTTGTGCCCGTCCCCGGAGGCCAACCGAAACGGCGAACCGG GCCATGCCTCCCGAGACGTTGCCGATTCAAACGCCCACCCATCCTTTTCC GCACCCACATCCTCCTACCATACGCACGTCCAACGCGTTCGATGGACATG CATACCAACCTAACATCTCCTAATAGCCTTTCCCACCTCATCTTTGCTTC TTACCTTCCCCCAGAAAAGTTGCCGCGGCCCAAGCACCCATCATTTTCCT TGCCCTGCTCGGCTTCTTGACTTCTCATCATCACTAGCCAGTCCGCCTGC GCCCTCGCAATTATCATCGTCGTCACGTCCTGATCGTCGTCGTCGGTGCG TGTTTGCTCCTTAAAAGTGCCGTCGTTGTCATCTTCCAGGGCACCCAGCC GTATCAACATCATCAGCAGCTTTAGCAGCAGGCGTCGGGTCGCACCGCGC TCTCCACCGGACACCATTGCGCCATTGCCCCACCTATCCACGCGTCAGAG TAGCAGCCACGAAGAGGAGGAGGACCAGGCCGCGTCACCACACTACCGCG CCCACCACGCTACCTCAGGTGGAAGCAACGACGGAAACGCGCTTCTATTG AGTGGTGGTACGTTGGTGTCCGGGATTGTCCCTCCCTCCACCCCTCCATC GCTCCCCTTCTGTATTCCACCCTTTCCTCCCTTTCCGCATTTCATCTTTC CGGGCTCTCAACTGCCACCACTTTCTCTCTCACACAACCACCAAAATTTG CCACCTCACAGACAACTGTTTATACTCCTTTCACAGTGCTTGGCGTCTCA TTTTTTTCACTTTCCCACCAACCGTACTCCCAATCACCCCACCCCATCAC CTAGAGCCAAATATGAGCCCGCATCATCATCGCAACAGCCCCGGCAGCGC CAATGCAGGCTTCTTCCACAGCACTAAAGTACGCGCCGCGGGCATCATGC TTTCCGTTGGACTAGCCATGTTTTTCTCTGTCACATACCTGTGGAATGAT GCCAATGCTGTGGATGCGGGTGCTGTTTCCTTCCCTGGTGCCGCTGCCTC TGGAATTTCTATGCTGCAAGCACAGCAGCAGGCAATGTCGGAGGAAATGC GAGAGGAGATTAAAAAGGAGGTCCGGGCCGAGATTCTGGCAGCTATGGCC GTGGAAAACAAGAAGAGGGAAGAGCTGCTACAAGCACAGAAGGAGCAAGA GCAGCACCAGCAGGAACAGCAGAAGGACGTGGCTGCTGGTCAGGACGGGA AGAGCAACAGCAGTAAGGCGGGTTCGGACGGCCGCTTGGGCTTGAGAAAG AACCAGCTGTCATATTACCCGTTCACAGCGACGCTTAGTGAGAGCAAGAG GAAGAGGGTGGTGGTGACGGGAGGGGCGGGTTTCGTGGGATCGCATTTGG TGGACCGACTGATGGAGGAAGGGCACGAGGTCATCGTGATTGACAACATG TTCACGGGGCGGAAGAAGAATGTGGCCCATTGGATCGGTCACCCGAACTT CATGTTGATCGTCCACGACGTCGTGGAGCCCATCATGCTGGAGGTGGATC AGATCTACCACCTGGCCTGCCCTGCCTCCCCCCCCATTATCAGTACAACC CGATCAAGACCATCAAGACGAGCACGATGGGGACGTTGAACATGCTGGGC CTGGCCAAGCGGGTGCGGGCGCGGATGCTCTTGACGTCGACGAGTGAGGT GTATGGAGACCCGCAGGTACGTACACATGCTTGAGCCTTCCCTTCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTC CCTCCCTCCCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC CCTCCCTCCCTCCCTCCCTCCTTTGCCCTATCTGGTTTTCAGGGACAGAT GTTTCCAGGTGACTTTTAGCACCAGAAGGCTTCTGCTCACCATCATCACG GCTCTTGTGCGCATTTGTTTCACTCCTCCATTCCTCCCTCCCTACCCCCC CCTCCCTAGGTCCATCCCCAACCAGAGAGCTATTGGGGCAACGTGAACCC CATCGGTCCTCGTGCGTGTTATGATGAAGGGAAACGCGTGGCCGAGACCA TGATGTACGCGTATAGAGACCAGAGCGCGCAGGGGGATGGGGAGATGGAA GTGAGGGTGGCGAGGATATTCAATACGTTTGGGCCTCGGATGCACCCGAA TGACGGGCGCGTGGTTAGGTGAGGAGGAAGGGAGAGGATGAGGGAGGGAG GGGGAGGATGAGGGAGGGAGGGGAGGAGGGAGGGAGGGGGAGGATGAGGG AGGGAGGGGAGGAGGAAGAGAGGGAATGAGGGAGGGAGGGAGGGAGGGAT GGACTGCATTTATCCAAGAGGGATGGGAATAGACGGCTCAAAGACAAGGA CTCGCTCACTCACCGCCTCTGTTCCTCTTGTCCCCCCCCCTCCCCCCTCC CTCCTTTTTCTCATATCCTATTCTCTCGCATGGTTTTGAAATCTTCTCTT AGTAATTTCATCATCCAAGCTTTGCAAGGCAACAACATTACAATTTATGG TGAAGGGGCACAGACGCGTTCGTTCCAGTATGTGGATGACCTCGTCGCTG GTTTAATGAAGCTGATGAATAGGTAGGGGGGGTTGGAGGCAGGGAGGGAG GAGAGAGCGAAGGAGGCGAACAGACGCGCTTGGGTGTGCGGTGTAGATCC TTTTTCGGTCTAGTAAATCAATTTATCCCTCCTCCCCTCCCTCCTTCCTT CTTCCAGTGACTACGAGATGCCGGTCAATCTGGGAAACCCCGACGAGTAC ACTGTCAAAGACTTCGCCTTGCTTGTCAAGGTGAGGCGGGAGGGAGGGAG AGAGGGAGGGAGAGAGGGGAGGAAAAAATGTGTTGCCGTAAATCCTTACT GGCGCATCCGGTATTGCCTGAGTACCGCAACGCCATAAGAGATTAATTTT CCGTTCTTTGTACATATATATTTATTCAATTTTTTCCTCCCCGCCCTTCC CTTCCTCCTTTCCTCCTTTAGGAGCTCGTGGGCCCCACCCACAGTCACAT TGTCCACCTCCCCCCTACGAAGGACGACCCCACCAAACGCAAGCCCGACA TCACGGTCGCTCAGGAGGTGCTGGGATGGCAGCCGCAGGTAGCCGTTAGG GATGGCCTAGCCAAGACCGTGGAGTATTTTAGAAAGGAGTTGGACGAGAC GGTGCGTTTTGATTTTTGGAGCTTTTTCTTCTCGTTTCCCCTTCATTCAT TTATTAATCAATCAGTTATTTGCTGTATGTGACTCCATAAATGTATCCAT CCAGTCACTCATTGTATTTCATTCTATCACACTCGTTGTAGGGTGAGGTT ATTCCCACCGGCCCCGAGGCGACCAAGCCCAAGCCCCACAGCGAGGACGA AGCACGCCTGTGA
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Coding sequence (CDS) from alignment at chr4:1208284..1211796-

>NO04G04450.1 ID=NO04G04450.1|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at chr4:1208284..1211796- (Nannochloropsis oceanica)
ATGTTATCAATCGGCACTGGTACCATGCTGAGGCTGGCAGCCAGTCCGCC
TGCGCCCTCGCAATTATCATCGTCGTCACGTCCTGATCGTCGTCGTCGCT
TTAGCAGCAGGCGTCGGGTCGCACCGCGCTCTCCACCGGACACCATTGCG
CCATTGCCCCACCTATCCACGCGTCAGAGTAGCAGCCACGAAGAGGAGGA
GGACCAGGCCGCGTCACCACACTACCGCGCCCACCACGCTACCTCAGGTG
GAAGCAACGACGGAAACGCGCTTCTATTGAGTGGTGAGCCAAATATGAGC
CCGCATCATCATCGCAACAGCCCCGGCAGCGCCAATGCAGGCTTCTTCCA
CAGCACTAAAGTACGCGCCGCGGGCATCATGCTTTCCGTTGGACTAGCCA
TGTTTTTCTCTGTCACATACCTGTGGAATGATGCCAATGCTGTGGATGCG
GGTGCTGTTTCCTTCCCTGGTGCCGCTGCCTCTGGAATTTCTATGCTGCA
AGCACAGCAGCAGGCAATGTCGGAGGAAATGCGAGAGGAGATTAAAAAGG
AGGTCCGGGCCGAGATTCTGGCAGCTATGGCCGTGGAAAACAAGAAGAGG
GAAGAGCTGCTACAAGCACAGAAGGAGCAAGAGCAGCACCAGCAGGAACA
GCAGAAGGACGTGGCTGCTGGTCAGGACGGGAAGAGCAACAGCAGTAAGG
CGGGTTCGGACGGCCGCTTGGGCTTGAGAAAGAACCAGCTGTCATATTAC
CCGTTCACAGCGACGCTTAGTGAGAGCAAGAGGAAGAGGGTGGTGGTGAC
GGGAGGGGCGGGTTTCGTGGGATCGCATTTGGTGGACCGACTGATGGAGG
AAGGGCACGAGGTCATCGTGATTGACAACATGTTCACGGGGCGGAAGAAG
AATGTGGCCCATTGGATCGGTCACCCGAACTTCATGTTGATCGTCCACGA
CGTCGTGGAGCCCATCATGCTGGAGTACAACCCGATCAAGACCATCAAGA
CGAGCACGATGGGGACGTTGAACATGCTGGGCCTGGCCAAGCGGGTGCGG
GCGCGGATGCTCTTGACGTCGACGAGTGAGGTGTATGGAGACCCGCAGGT
CCATCCCCAACCAGAGAGCTATTGGGGCAACGTGAACCCCATCGGTCCTC
GTGCGTGTTATGATGAAGGGAAACGCGTGGCCGAGACCATGATGTACGCG
TATAGAGACCAGAGCGCGCAGGGGGATGGGGAGATGGAAGTGAGGGTGGC
GAGGATATTCAATACGTTTGGGCCTCGGATGCACCCGAATGACGGGCGCG
TGGTTAGTAATTTCATCATCCAAGCTTTGCAAGGCAACAACATTACAATT
TATGGTGAAGGGGCACAGACGCGTTCGTTCCAGTATGTGGATGACCTCGT
CGCTGGTTTAATGAAGCTGATGAATAGTGACTACGAGATGCCGGTCAATC
TGGGAAACCCCGACGAGTACACTGTCAAAGACTTCGCCTTGCTTGTCAAG
GAGCTCGTGGGCCCCACCCACAGTCACATTGTCCACCTCCCCCCTACGAA
GGACGACCCCACCAAACGCAAGCCCGACATCACGGTCGCTCAGGAGGTGC
TGGGATGGCAGCCGCAGGTAGCCGTTAGGGATGGCCTAGCCAAGACCGTG
GAGTATTTTAGAAAGGAGTTGGACGAGACGGGTGAGGTTATTCCCACCGG
CCCCGAGGCGACCAAGCCCAAGCCCCACAGCGAGGACGAAGCACGCCTGT
GA
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Synonyms
Publications