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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1208284..1211796 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04450.1 vs.
Match: XP_005855230.1 (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526]; EKU21132.1 UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 573.9 bits (1478), Expect = 5.500e-160 Identity = 322/508 (63.39%), Postives = 373/508 (73.43%), Query Frame = 0
Query: 97 PNMSPHHHRNSPGSANAGFFHSTKVRAAGIMLSVGLAMFFSVTYLWNDANAVDAGAVSF----PGAAASGISMLQAQQQAM--------SEEMREEIKKEVRAEILAAMAVENKKREELLQAQKEQEQHQQEQQKDVAAGQDGKSNSSKAGSDGRLGLRKNQLSYYPFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITIYGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVKELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTVEYFRKELDETGEVIPTGPEATKPKP 576
P MS H R+ GS+ +S+ VR A + + LA+ SV Y++ V + S G+ MLQ + + SEE+R IK+EVRAEILAAMA E KKR +++ H + + DG+ S+ G+L YP TATLSE +R+R++VTGGAGFVGSHLVDRLM EGHEVIV+DNMFTGRKKNVAHWIGHP+FMLIVHDVVEPI+LE YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQ+HPQPESYWGNVNPIGPRACYDEGKRVAETMMYAY +QS+ ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQG +ITIYGEG QTRSFQYV+DLV GL KLMNSDY +PVNLGNP+EYTVKDFALLVKELV + S IVH+P TKDDP KRKPDI VA +VLGWQP+V VR+GL+KTV YFR EL++TGE++PTGP+AT+PKP
Sbjct: 9 PRMS-HSFRHWFGSSTGHRLNSS-VRTAFLFIVGALALVISVNYVFGREPLVLRASSSHVRGGDEGGNGGMQMLQHDGRQVESHKPVLVSEELRRTIKEEVRAEILAAMAEEEKKR-------RQEAPHARPGTRG-----DGERTVSRQEQLGQL---------YPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQSS-----VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 488
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04450.1 ID=NO04G04450.1|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp ATGTTATCAATCGGCACTGGTACCATGCTGAGGCTGGCAGCCAGTCCGCC TGCGCCCTCGCAATTATCATCGTCGTCACGTCCTGATCGTCGTCGTCGCT TTAGCAGCAGGCGTCGGGTCGCACCGCGCTCTCCACCGGACACCATTGCG CCATTGCCCCACCTATCCACGCGTCAGAGTAGCAGCCACGAAGAGGAGGA GGACCAGGCCGCGTCACCACACTACCGCGCCCACCACGCTACCTCAGGTG GAAGCAACGACGGAAACGCGCTTCTATTGAGTGGTGAGCCAAATATGAGC CCGCATCATCATCGCAACAGCCCCGGCAGCGCCAATGCAGGCTTCTTCCA CAGCACTAAAGTACGCGCCGCGGGCATCATGCTTTCCGTTGGACTAGCCA TGTTTTTCTCTGTCACATACCTGTGGAATGATGCCAATGCTGTGGATGCG GGTGCTGTTTCCTTCCCTGGTGCCGCTGCCTCTGGAATTTCTATGCTGCA AGCACAGCAGCAGGCAATGTCGGAGGAAATGCGAGAGGAGATTAAAAAGG AGGTCCGGGCCGAGATTCTGGCAGCTATGGCCGTGGAAAACAAGAAGAGG GAAGAGCTGCTACAAGCACAGAAGGAGCAAGAGCAGCACCAGCAGGAACA GCAGAAGGACGTGGCTGCTGGTCAGGACGGGAAGAGCAACAGCAGTAAGG CGGGTTCGGACGGCCGCTTGGGCTTGAGAAAGAACCAGCTGTCATATTAC CCGTTCACAGCGACGCTTAGTGAGAGCAAGAGGAAGAGGGTGGTGGTGAC GGGAGGGGCGGGTTTCGTGGGATCGCATTTGGTGGACCGACTGATGGAGG AAGGGCACGAGGTCATCGTGATTGACAACATGTTCACGGGGCGGAAGAAG AATGTGGCCCATTGGATCGGTCACCCGAACTTCATGTTGATCGTCCACGA CGTCGTGGAGCCCATCATGCTGGAGTACAACCCGATCAAGACCATCAAGA CGAGCACGATGGGGACGTTGAACATGCTGGGCCTGGCCAAGCGGGTGCGG GCGCGGATGCTCTTGACGTCGACGAGTGAGGTGTATGGAGACCCGCAGGT CCATCCCCAACCAGAGAGCTATTGGGGCAACGTGAACCCCATCGGTCCTC GTGCGTGTTATGATGAAGGGAAACGCGTGGCCGAGACCATGATGTACGCG TATAGAGACCAGAGCGCGCAGGGGGATGGGGAGATGGAAGTGAGGGTGGC GAGGATATTCAATACGTTTGGGCCTCGGATGCACCCGAATGACGGGCGCG TGGTTAGTAATTTCATCATCCAAGCTTTGCAAGGCAACAACATTACAATT TATGGTGAAGGGGCACAGACGCGTTCGTTCCAGTATGTGGATGACCTCGT CGCTGGTTTAATGAAGCTGATGAATAGTGACTACGAGATGCCGGTCAATC TGGGAAACCCCGACGAGTACACTGTCAAAGACTTCGCCTTGCTTGTCAAG GAGCTCGTGGGCCCCACCCACAGTCACATTGTCCACCTCCCCCCTACGAA GGACGACCCCACCAAACGCAAGCCCGACATCACGGTCGCTCAGGAGGTGC TGGGATGGCAGCCGCAGGTAGCCGTTAGGGATGGCCTAGCCAAGACCGTG GAGTATTTTAGAAAGGAGTTGGACGAGACGGGTGAGGTTATTCCCACCGG CCCCGAGGCGACCAAGCCCAAGCCCCACAGCGAGGACGAAGCACGCCTGT GA back to topprotein sequence of NO04G04450.1 >NO04G04450.1-protein ID=NO04G04450.1-protein|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp MLSIGTGTMLRLAASPPAPSQLSSSSRPDRRRRFSSRRRVAPRSPPDTIA PLPHLSTRQSSSHEEEEDQAASPHYRAHHATSGGSNDGNALLLSGEPNMS PHHHRNSPGSANAGFFHSTKVRAAGIMLSVGLAMFFSVTYLWNDANAVDA GAVSFPGAAASGISMLQAQQQAMSEEMREEIKKEVRAEILAAMAVENKKR EELLQAQKEQEQHQQEQQKDVAAGQDGKSNSSKAGSDGRLGLRKNQLSYY PFTATLSESKRKRVVVTGGAGFVGSHLVDRLMEEGHEVIVIDNMFTGRKK NVAHWIGHPNFMLIVHDVVEPIMLEYNPIKTIKTSTMGTLNMLGLAKRVR ARMLLTSTSEVYGDPQVHPQPESYWGNVNPIGPRACYDEGKRVAETMMYA YRDQSAQGDGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGNNITI YGEGAQTRSFQYVDDLVAGLMKLMNSDYEMPVNLGNPDEYTVKDFALLVK ELVGPTHSHIVHLPPTKDDPTKRKPDITVAQEVLGWQPQVAVRDGLAKTV EYFRKELDETGEVIPTGPEATKPKPHSEDEARL* back to topmRNA from alignment at chr4:1208284..1211796- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04450.1 ID=NO04G04450.1|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3513bp|location=Sequence derived from alignment at chr4:1208284..1211796- (Nannochloropsis oceanica) ATGTTATCAATCGGCACTGGTACCATGCTGAGGCTGGCAGGTTCGGGGTT
TGGCGAGGACTTGTGCCCGTCCCCGGAGGCCAACCGAAACGGCGAACCGG
GCCATGCCTCCCGAGACGTTGCCGATTCAAACGCCCACCCATCCTTTTCC
GCACCCACATCCTCCTACCATACGCACGTCCAACGCGTTCGATGGACATG
CATACCAACCTAACATCTCCTAATAGCCTTTCCCACCTCATCTTTGCTTC
TTACCTTCCCCCAGAAAAGTTGCCGCGGCCCAAGCACCCATCATTTTCCT
TGCCCTGCTCGGCTTCTTGACTTCTCATCATCACTAGCCAGTCCGCCTGC
GCCCTCGCAATTATCATCGTCGTCACGTCCTGATCGTCGTCGTCGGTGCG
TGTTTGCTCCTTAAAAGTGCCGTCGTTGTCATCTTCCAGGGCACCCAGCC
GTATCAACATCATCAGCAGCTTTAGCAGCAGGCGTCGGGTCGCACCGCGC
TCTCCACCGGACACCATTGCGCCATTGCCCCACCTATCCACGCGTCAGAG
TAGCAGCCACGAAGAGGAGGAGGACCAGGCCGCGTCACCACACTACCGCG
CCCACCACGCTACCTCAGGTGGAAGCAACGACGGAAACGCGCTTCTATTG
AGTGGTGGTACGTTGGTGTCCGGGATTGTCCCTCCCTCCACCCCTCCATC
GCTCCCCTTCTGTATTCCACCCTTTCCTCCCTTTCCGCATTTCATCTTTC
CGGGCTCTCAACTGCCACCACTTTCTCTCTCACACAACCACCAAAATTTG
CCACCTCACAGACAACTGTTTATACTCCTTTCACAGTGCTTGGCGTCTCA
TTTTTTTCACTTTCCCACCAACCGTACTCCCAATCACCCCACCCCATCAC
CTAGAGCCAAATATGAGCCCGCATCATCATCGCAACAGCCCCGGCAGCGC
CAATGCAGGCTTCTTCCACAGCACTAAAGTACGCGCCGCGGGCATCATGC
TTTCCGTTGGACTAGCCATGTTTTTCTCTGTCACATACCTGTGGAATGAT
GCCAATGCTGTGGATGCGGGTGCTGTTTCCTTCCCTGGTGCCGCTGCCTC
TGGAATTTCTATGCTGCAAGCACAGCAGCAGGCAATGTCGGAGGAAATGC
GAGAGGAGATTAAAAAGGAGGTCCGGGCCGAGATTCTGGCAGCTATGGCC
GTGGAAAACAAGAAGAGGGAAGAGCTGCTACAAGCACAGAAGGAGCAAGA
GCAGCACCAGCAGGAACAGCAGAAGGACGTGGCTGCTGGTCAGGACGGGA
AGAGCAACAGCAGTAAGGCGGGTTCGGACGGCCGCTTGGGCTTGAGAAAG
AACCAGCTGTCATATTACCCGTTCACAGCGACGCTTAGTGAGAGCAAGAG
GAAGAGGGTGGTGGTGACGGGAGGGGCGGGTTTCGTGGGATCGCATTTGG
TGGACCGACTGATGGAGGAAGGGCACGAGGTCATCGTGATTGACAACATG
TTCACGGGGCGGAAGAAGAATGTGGCCCATTGGATCGGTCACCCGAACTT
CATGTTGATCGTCCACGACGTCGTGGAGCCCATCATGCTGGAGGTGGATC
AGATCTACCACCTGGCCTGCCCTGCCTCCCCCCCCATTATCAGTACAACC
CGATCAAGACCATCAAGACGAGCACGATGGGGACGTTGAACATGCTGGGC
CTGGCCAAGCGGGTGCGGGCGCGGATGCTCTTGACGTCGACGAGTGAGGT
GTATGGAGACCCGCAGGTACGTACACATGCTTGAGCCTTCCCTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTTTGCCCTATCTGGTTTTCAGGGACAGAT
GTTTCCAGGTGACTTTTAGCACCAGAAGGCTTCTGCTCACCATCATCACG
GCTCTTGTGCGCATTTGTTTCACTCCTCCATTCCTCCCTCCCTACCCCCC
CCTCCCTAGGTCCATCCCCAACCAGAGAGCTATTGGGGCAACGTGAACCC
CATCGGTCCTCGTGCGTGTTATGATGAAGGGAAACGCGTGGCCGAGACCA
TGATGTACGCGTATAGAGACCAGAGCGCGCAGGGGGATGGGGAGATGGAA
GTGAGGGTGGCGAGGATATTCAATACGTTTGGGCCTCGGATGCACCCGAA
TGACGGGCGCGTGGTTAGGTGAGGAGGAAGGGAGAGGATGAGGGAGGGAG
GGGGAGGATGAGGGAGGGAGGGGAGGAGGGAGGGAGGGGGAGGATGAGGG
AGGGAGGGGAGGAGGAAGAGAGGGAATGAGGGAGGGAGGGAGGGAGGGAT
GGACTGCATTTATCCAAGAGGGATGGGAATAGACGGCTCAAAGACAAGGA
CTCGCTCACTCACCGCCTCTGTTCCTCTTGTCCCCCCCCCTCCCCCCTCC
CTCCTTTTTCTCATATCCTATTCTCTCGCATGGTTTTGAAATCTTCTCTT
AGTAATTTCATCATCCAAGCTTTGCAAGGCAACAACATTACAATTTATGG
TGAAGGGGCACAGACGCGTTCGTTCCAGTATGTGGATGACCTCGTCGCTG
GTTTAATGAAGCTGATGAATAGGTAGGGGGGGTTGGAGGCAGGGAGGGAG
GAGAGAGCGAAGGAGGCGAACAGACGCGCTTGGGTGTGCGGTGTAGATCC
TTTTTCGGTCTAGTAAATCAATTTATCCCTCCTCCCCTCCCTCCTTCCTT
CTTCCAGTGACTACGAGATGCCGGTCAATCTGGGAAACCCCGACGAGTAC
ACTGTCAAAGACTTCGCCTTGCTTGTCAAGGTGAGGCGGGAGGGAGGGAG
AGAGGGAGGGAGAGAGGGGAGGAAAAAATGTGTTGCCGTAAATCCTTACT
GGCGCATCCGGTATTGCCTGAGTACCGCAACGCCATAAGAGATTAATTTT
CCGTTCTTTGTACATATATATTTATTCAATTTTTTCCTCCCCGCCCTTCC
CTTCCTCCTTTCCTCCTTTAGGAGCTCGTGGGCCCCACCCACAGTCACAT
TGTCCACCTCCCCCCTACGAAGGACGACCCCACCAAACGCAAGCCCGACA
TCACGGTCGCTCAGGAGGTGCTGGGATGGCAGCCGCAGGTAGCCGTTAGG
GATGGCCTAGCCAAGACCGTGGAGTATTTTAGAAAGGAGTTGGACGAGAC
GGTGCGTTTTGATTTTTGGAGCTTTTTCTTCTCGTTTCCCCTTCATTCAT
TTATTAATCAATCAGTTATTTGCTGTATGTGACTCCATAAATGTATCCAT
CCAGTCACTCATTGTATTTCATTCTATCACACTCGTTGTAGGGTGAGGTT
ATTCCCACCGGCCCCGAGGCGACCAAGCCCAAGCCCCACAGCGAGGACGA
AGCACGCCTGTGA back to topCoding sequence (CDS) from alignment at chr4:1208284..1211796- >NO04G04450.1 ID=NO04G04450.1|Name=NO04G04450.1|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at chr4:1208284..1211796- (Nannochloropsis oceanica) ATGTTATCAATCGGCACTGGTACCATGCTGAGGCTGGCAGCCAGTCCGCC TGCGCCCTCGCAATTATCATCGTCGTCACGTCCTGATCGTCGTCGTCGCT TTAGCAGCAGGCGTCGGGTCGCACCGCGCTCTCCACCGGACACCATTGCG CCATTGCCCCACCTATCCACGCGTCAGAGTAGCAGCCACGAAGAGGAGGA GGACCAGGCCGCGTCACCACACTACCGCGCCCACCACGCTACCTCAGGTG GAAGCAACGACGGAAACGCGCTTCTATTGAGTGGTGAGCCAAATATGAGC CCGCATCATCATCGCAACAGCCCCGGCAGCGCCAATGCAGGCTTCTTCCA CAGCACTAAAGTACGCGCCGCGGGCATCATGCTTTCCGTTGGACTAGCCA TGTTTTTCTCTGTCACATACCTGTGGAATGATGCCAATGCTGTGGATGCG GGTGCTGTTTCCTTCCCTGGTGCCGCTGCCTCTGGAATTTCTATGCTGCA AGCACAGCAGCAGGCAATGTCGGAGGAAATGCGAGAGGAGATTAAAAAGG AGGTCCGGGCCGAGATTCTGGCAGCTATGGCCGTGGAAAACAAGAAGAGG GAAGAGCTGCTACAAGCACAGAAGGAGCAAGAGCAGCACCAGCAGGAACA GCAGAAGGACGTGGCTGCTGGTCAGGACGGGAAGAGCAACAGCAGTAAGG CGGGTTCGGACGGCCGCTTGGGCTTGAGAAAGAACCAGCTGTCATATTAC CCGTTCACAGCGACGCTTAGTGAGAGCAAGAGGAAGAGGGTGGTGGTGAC GGGAGGGGCGGGTTTCGTGGGATCGCATTTGGTGGACCGACTGATGGAGG AAGGGCACGAGGTCATCGTGATTGACAACATGTTCACGGGGCGGAAGAAG AATGTGGCCCATTGGATCGGTCACCCGAACTTCATGTTGATCGTCCACGA CGTCGTGGAGCCCATCATGCTGGAGTACAACCCGATCAAGACCATCAAGA CGAGCACGATGGGGACGTTGAACATGCTGGGCCTGGCCAAGCGGGTGCGG GCGCGGATGCTCTTGACGTCGACGAGTGAGGTGTATGGAGACCCGCAGGT CCATCCCCAACCAGAGAGCTATTGGGGCAACGTGAACCCCATCGGTCCTC GTGCGTGTTATGATGAAGGGAAACGCGTGGCCGAGACCATGATGTACGCG TATAGAGACCAGAGCGCGCAGGGGGATGGGGAGATGGAAGTGAGGGTGGC GAGGATATTCAATACGTTTGGGCCTCGGATGCACCCGAATGACGGGCGCG TGGTTAGTAATTTCATCATCCAAGCTTTGCAAGGCAACAACATTACAATT TATGGTGAAGGGGCACAGACGCGTTCGTTCCAGTATGTGGATGACCTCGT CGCTGGTTTAATGAAGCTGATGAATAGTGACTACGAGATGCCGGTCAATC TGGGAAACCCCGACGAGTACACTGTCAAAGACTTCGCCTTGCTTGTCAAG GAGCTCGTGGGCCCCACCCACAGTCACATTGTCCACCTCCCCCCTACGAA GGACGACCCCACCAAACGCAAGCCCGACATCACGGTCGCTCAGGAGGTGC TGGGATGGCAGCCGCAGGTAGCCGTTAGGGATGGCCTAGCCAAGACCGTG GAGTATTTTAGAAAGGAGTTGGACGAGACGGGTGAGGTTATTCCCACCGG CCCCGAGGCGACCAAGCCCAAGCCCCACAGCGAGGACGAAGCACGCCTGT GA back to top
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