NO04G04200, NO04G04200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G04200 vs. NCBI_GenBank
Match: XP_002605547.1 (retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae] >EEN61557.1 retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae]) HSP 1 Score: 204.5 bits (519), Expect = 6.400e-49 Identity = 120/308 (38.96%), Postives = 180/308 (58.44%), Query Frame = 0 Query: 79 LLGPILAFLIVCYDVVSGFFFPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECA-AVQTVLLDVTKADQVQSAADRV-DSENPQGLYALVNNAGIA--KSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMV--AVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGE 381 +L +++ L V Y VV+ ++ ++ DK V ITGCD+GFG L+ L Q G +V+A CLT G + C+ +Q + +DV+ +D VQ A V ++ +GL+ LVNNAGIA G ++W + D++ + VN G+I VTK FLPL+K+ +GR+V V+S G P + PY+ SK+ VE F+ LR+ MR +G+KV I PGFHRTE+ A++ L+ W + P + EYG + + K+ V + + DPV VV A+EHA+ TRPR +Y +G DA+ V P LG+ Sbjct: 5 MLLEVISVLWVTYSVVT-WWLERGRLSQLTDKTVLITGCDTGFGNLLSKRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDAFRVVKEAVGSKGLWGLVNNAGIAGVAGGPMEWATKEDYQAVLNVNLLGMIDVTKTFLPLLKKSRGRVVNVASAVG-RMAVPHAGPYTVSKYGVEAFSDCLRRAMRYFGVKVHIIEPGFHRTEITNQENALRLLDHTWQRQSPETKTEYGEEFLQAAKDAV-VAADRFMQDPVAVVDAMEHALCATRPRSRYVIGWDARIMFVPISWLPTDLGD 309
BLAST of NO04G04200 vs. NCBI_GenBank
Match: EWM26706.1 (retinol dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 203.4 bits (516), Expect = 1.400e-48 Identity = 131/324 (40.43%), Postives = 180/324 (55.56%), Query Frame = 0 Query: 57 NNLCHIDLLEEWI-WYSYFAGAWLLGPILAFLIV----CYDV--VSGFFFPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECAAVQTVLLDVTKADQVQSAADRVDSENP-QGLYALVNNAGIAKSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKR------RKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKY 367 NN H ++ I +Y Y+ G WL P++AF + YD+ GF P V ITGC SGFG L + LA +G+KVY AC+ E + V+ ++LDVT +QV++A VD ENP +GLYALVNNAG G DW S+ F+V M+VNY+G I VTKA LPL+KR RI+ ++S +G+ G PL YSASKHA E ++++LRQEMR + I+V+ +NP +H T + + L + PP +Q +YG Y E + + P NV R + AVT R R QY VGLDA++ Sbjct: 33 NNFLHSNIYVYIITYYLYWLGFWLFIPVVAFFTMLGFGLYDLFTAKGFRKPC--------GPVLITGCSSGFGLDLTMALAAQGWKVY-ACVRREADMAPFSNNPNVKGLILDVTNEEQVRAAFATVDGENPEEGLYALVNNAGFEHYGTTDWCSLDYFKVHMDVNYYGPIRVTKAALPLLKRYGRGGSAAARIININSTSGLLPGLPLKGGYSASKHAAEAWSNSLRQEMRHFNIQVTVVNPSWHDTRCALPPKEKLLAVFRAAPPAVQEDYGEPYVVEAAEEAYTGRQWFTWKPENVGRVMLWAVTAERYRPQYIVGLDARF 347
BLAST of NO04G04200 vs. NCBI_GenBank
Match: XP_002599606.1 (retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae] >EEN55618.1 retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae]) HSP 1 Score: 202.6 bits (514), Expect = 2.400e-48 Identity = 120/306 (39.22%), Postives = 178/306 (58.17%), Query Frame = 0 Query: 83 ILAFLIVCYDVVSGFFFPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECA-AVQTVLLDVTKADQVQSAADRV-DSENPQGLYALVNNAGIAK--SGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEM--NMVAVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKI 383 I+ L V Y VV+ ++ ++ K V ITGCD+GFG LA L Q G +V+A CLT G + C+ +Q + +DV+ +D VQ A V ++ +GL+ LVNNAG+ G +W ++ D++ + VN G+I VTK FLPL+K+ +GR+V V+S AG PL PY+ SK+ VE F+ LR+ MR +G+KV I PG RT+M + + ++ L+ W + P +AEYG + + K+ + T + DPV VV A+EHA+ T PR +Y VG DA++ V T P LG+ I Sbjct: 9 IIIVLWVTYFVVT-WWLEKGRLSQLTGKTVLITGCDTGFGNLLARRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDAFRVVKEAVGSKGLHGLVNNAGVTGVFGGTTEWATLEDYQAVLNVNLLGMIDVTKTFLPLLKKSRGRVVNVASAAG-RMANPLGVPYTVSKYGVEAFSDCLRRAMRCFGVKVHIIEPGLFRTDMTNHDIILRRLDQTWQRQTPETKAEYGEEFLQAAKDDIIFGT-RFLQDPVAVVDAMEHALCATHPRSRYVVGWDARFITVPTSWLPTDLGDLI 311
BLAST of NO04G04200 vs. NCBI_GenBank
Match: XP_015214471.1 (PREDICTED: retinol dehydrogenase 3-like isoform X2 [Lepisosteus oculatus] >XP_015214472.1 PREDICTED: retinol dehydrogenase 3-like isoform X2 [Lepisosteus oculatus]) HSP 1 Score: 202.2 bits (513), Expect = 3.200e-48 Identity = 110/264 (41.67%), Postives = 165/264 (62.50%), Query Frame = 0 Query: 109 DKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECA-AVQTVLLDVTKADQVQSAADRV-DSENPQGLYALVNNAGIA-KSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAV--QGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVV-FDPVNVVRALEHAVTCTRPRVQYRVGLDAKY 367 DK V+ITGCD+GFG LA HL Q+GF+V AAC T +G + + + T+ LDVTK++ + AA+ + D +GL+ LVNNAG++ SG DW ++ D+R ++VN GVIAVT + LPL+K+ +GR+V V+SV G P PYS SK+ VE F +LR+ M P+G+KV I PGF +T + + + + ++ W K+P ++ +YGSSY + ++K ++ D + VV +EHAV+ PR +Y G DAK+ Sbjct: 29 DKYVYITGCDTGFGNQLAKHLDQQGFRVIAACFTEKGEDALRKGATDRLVTLHLDVTKSESIAKAAELIKDRVGEKGLWGLVNNAGVSVPSGPCDWLTVDDYRQMLDVNLLGVIAVTLSVLPLIKKARGRVVNVASVFGRIS--PFGGPYSVSKYGVEAFNDSLRRNMMPFGVKVLCIEPGFFKTSVTDIDILLKNVQQLWDKMPQEVKDDYGSSYVQKVSVLMKKMMGQLPDSDLMKVVSCMEHAVSAVHPRTRYSPGWDAKF 290
BLAST of NO04G04200 vs. NCBI_GenBank
Match: AAG44847.1 (microsomal retinol dehydrogenase 1 [Branchiostoma floridae]) HSP 1 Score: 202.2 bits (513), Expect = 3.200e-48 Identity = 119/304 (39.14%), Postives = 180/304 (59.21%), Query Frame = 0 Query: 83 ILAFLIVCYDVVSGFFFPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECA-AVQTVLLDVTKADQVQSAADRV-DSENPQGLYALVNNAGI--AKSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMV--AVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGE 381 I A L V Y VV+ ++ ++ DK V ITGCD+GFG LA L Q G +V+A CLT G + C+ +Q + +DV+ +D VQ A V ++ +GL+ LVNNAGI G ++W +M D++ + VN G+I VTK FLPL+K+ GR+V V+S AG P + PY+ +K+ VE F+ +LR+ MR +G+KV I PG+ RTE+N A++ L+ W ++ P + EYG + + K+ + ++ + DPV VV A+EHA+ T PR +Y +G DA++ V P LG+ Sbjct: 9 ITAVLWVTYLVVT-WWLERGRLSQLTDKTVLITGCDTGFGNLLAKRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDAFRVVKEAVGSKGLWGLVNNAGILGVAGGTMEWATMEDYQAVLNVNLLGMIDVTKTFLPLLKKSSGRVVNVASAAG-RVAVPDAGPYTVAKYGVEAFSDSLRRAMRYFGVKVHIIEPGYFRTEINNQENALRRLDDIWQRLSPETRTEYGEEFLQAGKDAIIA-SDRFMQDPVAVVDAMEHALCATHPRSRYVIGWDARFIFVPICWLPTDLGD 309
BLAST of NO04G04200 vs. NCBI_GenBank
Match: XP_006636595.2 (PREDICTED: retinol dehydrogenase 3-like isoform X1 [Lepisosteus oculatus]) HSP 1 Score: 202.2 bits (513), Expect = 3.200e-48 Identity = 110/264 (41.67%), Postives = 165/264 (62.50%), Query Frame = 0 Query: 109 DKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECA-AVQTVLLDVTKADQVQSAADRV-DSENPQGLYALVNNAGIA-KSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAV--QGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVV-FDPVNVVRALEHAVTCTRPRVQYRVGLDAKY 367 DK V+ITGCD+GFG LA HL Q+GF+V AAC T +G + + + T+ LDVTK++ + AA+ + D +GL+ LVNNAG++ SG DW ++ D+R ++VN GVIAVT + LPL+K+ +GR+V V+SV G P PYS SK+ VE F +LR+ M P+G+KV I PGF +T + + + + ++ W K+P ++ +YGSSY + ++K ++ D + VV +EHAV+ PR +Y G DAK+ Sbjct: 32 DKYVYITGCDTGFGNQLAKHLDQQGFRVIAACFTEKGEDALRKGATDRLVTLHLDVTKSESIAKAAELIKDRVGEKGLWGLVNNAGVSVPSGPCDWLTVDDYRQMLDVNLLGVIAVTLSVLPLIKKARGRVVNVASVFGRIS--PFGGPYSVSKYGVEAFNDSLRRNMMPFGVKVLCIEPGFFKTSVTDIDILLKNVQQLWDKMPQEVKDDYGSSYVQKVSVLMKKMMGQLPDSDLMKVVSCMEHAVSAVHPRTRYSPGWDAKF 293
BLAST of NO04G04200 vs. NCBI_GenBank
Match: XP_022787995.1 (retinol dehydrogenase 7-like isoform X1 [Stylophora pistillata] >PFX27243.1 Retinol dehydrogenase 3 [Stylophora pistillata]) HSP 1 Score: 202.2 bits (513), Expect = 3.200e-48 Identity = 113/284 (39.79%), Postives = 172/284 (60.56%), Query Frame = 0 Query: 110 KVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECAAVQTVL-LDVTKADQVQSAADRVDSENPQ--GLYALVNNAGIAKSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEM-NMVAVQG-LEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDP--VNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYAL 387 K V +TGCDSGFG+ A+ L GF V+A CLT+EG EN+T C+ T L LDVT + +++ V P+ GL+ LVNNAGIAK G I+W ++ +F+ +VN +G+I VTK FLPL+K+ +GRI+ ++S+ G +C P ++ YS SK VE F+ ALR+E+ P G+KVS + PGF +T++ N ++G + WA + ++ EYG ++E + + + P VV A+ H++T P+ +Y VG DAK +W P +G+ I+ L Sbjct: 63 KYVLVTGCDSGFGRETALRLDSLGFNVFATCLTSEGQENLTAACSKRLTALHLDVTDSKEIKETYKFVAQYLPENRGLWGLVNNAGIAKVGPIEWQTIEEFKQIADVNLWGLIDVTKVFLPLIKKERGRIINLASIGGRTC-LPHASAYSISKFGVEAFSDALRRELGPTGVKVSIVEPGFFQTKITNPDNLKGQWQELWANLNHSLKEEYGEKFYETSVKNMLTGMVDTCASPYLYKVVDAIVHSLTSRYPKTRYMVGWDAKLLWIWISRLPAGVGDAILNLL 345
BLAST of NO04G04200 vs. NCBI_GenBank
Match: XP_022787997.1 (retinol dehydrogenase 7-like isoform X2 [Stylophora pistillata]) HSP 1 Score: 202.2 bits (513), Expect = 3.200e-48 Identity = 113/284 (39.79%), Postives = 172/284 (60.56%), Query Frame = 0 Query: 110 KVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECAAVQTVL-LDVTKADQVQSAADRVDSENPQ--GLYALVNNAGIAKSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEM-NMVAVQG-LEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDP--VNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYAL 387 K V +TGCDSGFG+ A+ L GF V+A CLT+EG EN+T C+ T L LDVT + +++ V P+ GL+ LVNNAGIAK G I+W ++ +F+ +VN +G+I VTK FLPL+K+ +GRI+ ++S+ G +C P ++ YS SK VE F+ ALR+E+ P G+KVS + PGF +T++ N ++G + WA + ++ EYG ++E + + + P VV A+ H++T P+ +Y VG DAK +W P +G+ I+ L Sbjct: 38 KYVLVTGCDSGFGRETALRLDSLGFNVFATCLTSEGQENLTAACSKRLTALHLDVTDSKEIKETYKFVAQYLPENRGLWGLVNNAGIAKVGPIEWQTIEEFKQIADVNLWGLIDVTKVFLPLIKKERGRIINLASIGGRTC-LPHASAYSISKFGVEAFSDALRRELGPTGVKVSIVEPGFFQTKITNPDNLKGQWQELWANLNHSLKEEYGEKFYETSVKNMLTGMVDTCASPYLYKVVDAIVHSLTSRYPKTRYMVGWDAKLLWIWISRLPAGVGDAILNLL 320
BLAST of NO04G04200 vs. NCBI_GenBank
Match: XP_012305936.1 (17-beta-hydroxysteroid dehydrogenase type 6 [Aotus nancymaae] >XP_012305937.1 17-beta-hydroxysteroid dehydrogenase type 6 [Aotus nancymaae]) HSP 1 Score: 201.4 bits (511), Expect = 5.400e-48 Identity = 111/280 (39.64%), Postives = 164/280 (58.57%), Query Frame = 0 Query: 109 DKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECA-AVQTVLLDVTKADQVQSAADRV-DSENPQGLYALVNNAGIAKS-GLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMV--AVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKII 384 DK VFITGCDSGFG LA L +G +V AACLT +GAE + + + ++TV LD+TK + + +A V + +GL+ LVNNAGI K L +W S+ D ++VN GVI VT + LPLV+R +GRIV VSS+ G + + Y SK +E F+ LR+E+R +G+K+S + PG+ RT M + +++G++ CW K P HI+ YG YF+ +++ + V +EHA+T PR +Y G DAK+ + P L + I+ Sbjct: 29 DKYVFITGCDSGFGNLLARQLDARGLRVLAACLTEKGAEQLRRQTSDRLETVTLDITKMESIAAATQWVKEHVGDRGLWGLVNNAGIIKPVSLCEWLSIDDSMDILKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRIASF--AGVYCVSKFGIEAFSDILRRELRHFGVKISIVEPGYFRTGMTNLTQSLEGVKQCWEKAPKHIKETYGQQYFDAFYNIIKEGLLSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYLPTSLADYIL 306
BLAST of NO04G04200 vs. NCBI_GenBank
Match: AAG44848.1 (microsomal retinol dehydrogenase 2 [Branchiostoma floridae]) HSP 1 Score: 201.4 bits (511), Expect = 5.400e-48 Identity = 119/309 (38.51%), Postives = 177/309 (57.28%), Query Frame = 0 Query: 78 WLLGPILAFLIVCYDVVSGFFFPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECA-AVQTVLLDVTKADQVQSAADRV-DSENPQGLYALVNNAGIA--KSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMV--AVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGE 381 W L I++ L Y VV+ ++ ++ DK V ITGCD+GFG LA L Q G +V+A CLT G + C+ +Q + +DV+ +D VQ V ++ +GL+ LVNNAGIA G ++W + D++V + VN G+I VTK FLPL+K+ +GR+V V+S G P + PY+ SK+ VE F+ LR+ MR +G+KV I PGFHRTE+ A++ ++ W + + EYG + + K+ V + + DPV VV A+EHA+ T PR +Y VG +A+ V P LG+ Sbjct: 4 WTLLEIISALWAMYSVVT-WWLERGRLSQLTDKTVLITGCDTGFGNLLAKRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDGFRVVKEAVGSKGLWGLVNNAGIAGVAGGTMEWATKEDYQVVLNVNLLGMIDVTKTFLPLLKKSRGRVVNVASAVG-RMAVPQAGPYTVSKYGVEAFSDCLRRAMRYFGVKVHIIEPGFHRTEITNEENALRRMDQIWQRQSAETKTEYGEEFLQAAKDAV-VAADRFMQDPVAVVDAMEHALCATHPRSRYVVGWNARIMFVPISWLPTDLGD 309 The following BLAST results are available for this feature:
BLAST of NO04G04200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G04200 ID=NO04G04200|Name=NO04G04200|organism=Nannochloropsis oceanica|type=gene|length=1743bpback to top protein sequence of NO04G04200.1 >NO04G04200.1-protein ID=NO04G04200.1-protein|Name=NO04G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bpback to top Synonyms
Publications
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