NO04G04200.1, NO04G04200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04200.1
Unique NameNO04G04200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1743
Alignment locationchr4:1144247..1145989 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1144247..1145989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04200.1 vs.
Match: EWM28695.1 (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 605.5 bits (1560), Expect = 1.200e-169
Identity = 281/360 (78.06%), Postives = 322/360 (89.44%), Query Frame = 0 
Query:   49 MGSFLDFWNNLCHIDLLEEWIWYSYFAGAWLLGPILAFLIVCYDVVSGFFFPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMTTECAAVQTVLLDVTKADQVQSAADRVDSENPQGLYALVNNAGIAKSGLIDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAVQGLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYALTTNKKMRSIVGLKPVGKAMEAE 409
            MG  L+FWNNLCHIDLLEEWIWYSYF GAWLLGP +AFLIV YD  SGF FP+WH+ PS DK +FITGCD+GFG++LA+ LAQKGF+VYAACLTA G E +  EC+ V+T++LDVT  +QVQ AA RVD+ENP+GLYALVNNAG+AKSGLIDWF +SDFR CMEVN+FGV++VTKAFLPL+KR KGRIVVVSSVAGVSCGYPLS PYSASKHAVELFAS+LRQE+R WGIKVSTINPGFHRTEMN VAV+GLE CW+KV P IQA+YG SYFEGC++FV+ HTE+VVFDP+NVVRA+EHAVTCTRPR+QYRVGLDAKYGLVWTQIFPLR+GEK+IYALTTNKKMRSIVGL    +A +A+
Sbjct:    1 MGGCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQ 360
The following BLAST results are available for this feature:
BLAST of NO04G04200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28695.11.200e-16978.06retinol retinaldehyde reductase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04200NO04G04200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04200.1NO04G04200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04200.1.cds1NO04G04200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04200.1 ID=NO04G04200.1|Name=NO04G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
GGTCCTGGGGGCGAGCGCCTCTCACCTTACATAGATCGAGCTCCCCTCCG
GCGACATGCCGACAAGCACAAGATGTGTCGCCAGCGAGATTCCTCGGCCT
GCTTGCCCTGCCTGCTACAAACTCCTTCTGAACCTATCCCTAATCTTCCG
TCCAGAGTGTGGTGGTCTTTGGGGGGAGAATTTGAGTATGGCCCAGACCA
CGGCTCACCAGTGCCCCTCATCAAACACATGCAAATCCAGATCTCATGCA
TCGAACACATCCTACTACAACGACTCTCACACAGCAGAGCAGCCAAGTCT
CCAACTACCAAGCCCAGCCAACCTTCCCGTCCTCCCATTACAACTTTCGC
CTTGCCTCCGGGTCTCCAGACCTTCGATCTCTATACAGCATGGGCAGCTT
CCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCTGGAGGAGTGGA
TCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCCCCATCTTGGCC
TTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTCTTTCCTGTTTG
GCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCACGGGCTGTGACT
CGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGAAGGGATTCAAA
GTGTATGCGGCGTGCTTGACGGCCGAGGGCGCGGAGAATATGACAACGGA
GTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAAGGCAGACCAAG
TTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCCAAGGGCTATAC
GCGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTGATTGACTGGTT
TAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTATTTTGGGGTCA
TCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGCGCAAGGGTCGG
ATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGCTACCCTTTAAG
CACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTTTGCCTCGGCGT
TGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGACTATCAATCCT
GGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAGGGGCTGGAGGG
CTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTATGGCTCGAGCT
ATTTCGAGGGGTGCAAGGAATTCGTCAGGAAGCATACGGAGGAAGTGGTT
TTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCCGTGACGTGCAC
ACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAAGTACGGCTTGG
TATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAATCATCTACGCT
TTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTCAAGCCCGTGGG
GAAGGCCATGGAGGCGGAGGACTCTCGGGGGCAAGCAAGGGAGATAGAAG
GTTTGTAGAGTGCTTGTGTGATGCAAGCAGAGTGACAATAAGAACACCAT
GGTTATGCCGAGAAATGGGATTTTCGGCAGGGGGTCGAGGAATGAAGGCA
AGGGAATCAAATTGTGAAATAGAAGACATACAGTGACAGAGGGGAAGCGG
GAGCATAGCGAAACCAGTAGGCCAGAAATTATCAACTTTCTAAGTTGCTT
TCCATAAAACCCCATAAAATTAAGAAACTACCACACTCACGCC
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protein sequence of NO04G04200.1

>NO04G04200.1-protein ID=NO04G04200.1-protein|Name=NO04G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MHRTHPTTTTLTQQSSQVSNYQAQPTFPSSHYNFRLASGSPDLRSLYSMG
SFLDFWNNLCHIDLLEEWIWYSYFAGAWLLGPILAFLIVCYDVVSGFFFP
VWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAENMT
TECAAVQTVLLDVTKADQVQSAADRVDSENPQGLYALVNNAGIAKSGLID
WFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCGYP
LSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAVQGL
EGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHAVT
CTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYALTTNKKMRSIVGLKP
VGKAMEAEDSRGQAREIEGL*
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mRNA from alignment at chr4:1144247..1145989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04200.1 ID=NO04G04200.1|Name=NO04G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp|location=Sequence derived from alignment at chr4:1144247..1145989- (Nannochloropsis oceanica)
GGTCCTGGGGGCGAGCGCCTCTCACCTTACATAGATCGAGCTCCCCTCCG
GCGACATGCCGACAAGCACAAGATGTGTCGCCAGCGAGATTCCTCGGCCT
GCTTGCCCTGCCTGCTACAAACTCCTTCTGAACCTATCCCTAATCTTCCG
TCCAGAGTGTGGTGGTCTTTGGGGGGAGAATTTGAGTATGGCCCAGACCA
CGGCTCACCAGTGCCCCTCATCAAACACATGCAAATCCAGATCTCATGCA
TCGAACACATCCTACTACAACGACTCTCACACAGCAGAGCAGCCAAGTCT
CCAACTACCAAGCCCAGCCAACCTTCCCGTCCTCCCATTACAACTTTCGC
CTTGCCTCCGGGTCTCCAGACCTTCGATCTCTATACAGCATGGGCAGCTT
CCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCTGGAGGAGTGGA
TCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCCCCATCTTGGCC
TTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTCTTTCCTGTTTG
GCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCACGGGCTGTGACT
CGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGAAGGGATTCAAA
GTGTATGCGGCGTGCTTGACGGCCGAGGGCGCGGAGAATATGACAACGGA
GTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAAGGCAGACCAAG
TTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCCAAGGGCTATAC
GCGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTGATTGACTGGTT
TAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTATTTTGGGGTCA
TCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGCGCAAGGGTCGG
ATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGCTACCCTTTAAG
CACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTTTGCCTCGGCGT
TGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGACTATCAATCCT
GGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAGGGGCTGGAGGG
CTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTATGGCTCGAGCT
ATTTCGAGGGGTGCAAGGAATTCGTCAGGAAGCATACGGAGGAAGTGGTT
TTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCCGTGACGTGCAC
ACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAAGTACGGCTTGG
TATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAATCATCTACGCT
TTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTCAAGCCCGTGGG
GAAGGCCATGGAGGCGGAGGACTCTCGGGGGCAAGCAAGGGAGATAGAAG
GTTTGTAGAGTGCTTGTGTGATGCAAGCAGAGTGACAATAAGAACACCAT
GGTTATGCCGAGAAATGGGATTTTCGGCAGGGGGTCGAGGAATGAAGGCA
AGGGAATCAAATTGTGAAATAGAAGACATACAGTGACAGAGGGGAAGCGG
GAGCATAGCGAAACCAGTAGGCCAGAAATTATCAACTTTCTAAGTTGCTT
TCCATAAAACCCCATAAAATTAAGAAACTACCACACTCACGCC
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Coding sequence (CDS) from alignment at chr4:1144247..1145989-

>NO04G04200.1 ID=NO04G04200.1|Name=NO04G04200.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr4:1144247..1145989- (Nannochloropsis oceanica)
ATGCATCGAACACATCCTACTACAACGACTCTCACACAGCAGAGCAGCCA
AGTCTCCAACTACCAAGCCCAGCCAACCTTCCCGTCCTCCCATTACAACT
TTCGCCTTGCCTCCGGGTCTCCAGACCTTCGATCTCTATACAGCATGGGC
AGCTTCCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCTGGAGGA
GTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCCCCATCT
TGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTCTTTCCT
GTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCACGGGCTG
TGACTCGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGAAGGGAT
TCAAAGTGTATGCGGCGTGCTTGACGGCCGAGGGCGCGGAGAATATGACA
ACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAAGGCAGA
CCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCCAAGGGC
TATACGCGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTGATTGAC
TGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTATTTTGG
GGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGCGCAAGG
GTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGCTACCCT
TTAAGCACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTTTGCCTC
GGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGACTATCA
ATCCTGGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAGGGGCTG
GAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTATGGCTC
GAGCTATTTCGAGGGGTGCAAGGAATTCGTCAGGAAGCATACGGAGGAAG
TGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCCGTGACG
TGCACACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAAGTACGG
CTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAATCATCT
ACGCTTTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTCAAGCCC
GTGGGGAAGGCCATGGAGGCGGAGGACTCTCGGGGGCAAGCAAGGGAGAT
AGAAGGTTTGTAG
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Synonyms
Publications