NO04G04190, NO04G04190 (gene) Nannochloropsis oceanica

Overview
NameNO04G04190
Unique NameNO04G04190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr4:1142758..1144233 -

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Properties
Property NameValue
DescriptionTranscriptional activator hap2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1142758..1144233 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR001289TF_CBFB
Homology
BLAST of NO04G04190 vs. NCBI_GenBank
Match: EWM28755.1 (transcriptional activator hap2 [Nannochloropsis gaditana])

HSP 1 Score: 162.9 bits (411), Expect = 1.500e-36
Identity = 86/110 (78.18%), Postives = 90/110 (81.82%), Query Frame = 0
Query:  111 NFYDTMTTQSEGLEALIAAQEAVGPPSLAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEEQARLEAPVTAAA 221
            NFYD  + Q EG E L A QEA G   L PQPIFVNPKQYERIMKRREARARLENHRK+ AERKPFLHKSRH HA+KRPRGPGGRFLTKEERIAWDEEQA+LE   T  A
Sbjct:  108 NFYD-HSPQMEGFEPLGAPQEAAG-SDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMGA 215          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: KDN38107.1 (LOW QUALITY PROTEIN: hypothetical protein RSAG8_09703, partial [Rhizoctonia solani AG-8 WAC10335])

HSP 1 Score: 94.0 bits (232), Expect = 8.800e-16
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 0
Query:  115 TMTTQSEGLEALIAAQEAVGPPSLAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIA 205
            T  T S    + + AQE     +L  +P++VN KQY RI+KRR ARARLE   ++  ERKP+LH+SRH+HA++RPRGPGGRFLT EE +A
Sbjct:  105 TAATDSASSTSPVTAQE--DTEALDEEPLYVNAKQYHRILKRRSARARLEEVHRLSKERKPYLHESRHKHAMRRPRGPGGRFLTAEEIVA 192          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: OAQ22923.1 (hypothetical protein K457DRAFT_264066 [Mortierella elongata AG-77])

HSP 1 Score: 92.0 bits (227), Expect = 3.300e-15
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0
Query:  126 LIAAQEAVGPPSLAP---QPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEEQARLEAPVTAAAKGGGGVG 228
            ++  + A+G    AP   +P++VN KQY RI+KRR ARA+LE   ++   RKP+LH+SRH+HA++RPRGPGGRFLT +E    D  QA  EA         GGVG
Sbjct:   93 MVGGEGAMGHAPAAPADEEPLYVNAKQYHRILKRRAARAKLEELNRMAKIRKPYLHESRHKHAMRRPRGPGGRFLTSQEIAEMDRLQAEFEAQ--------GGVG 189          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: XP_003332222.2 (hypothetical protein PGTG_14518 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] >EFP87803.2 hypothetical protein PGTG_14518 [Puccinia graminis f. sp. tritici CRL 75-36-700-3])

HSP 1 Score: 91.7 bits (226), Expect = 4.400e-15
Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 0
Query:  136 PSLAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEE 202
            P+   +P+FVNPKQY+RI+KRR ARARLE   ++  ER+P+LH+SRH+HA++RPRGP GRFLTKEE
Sbjct:  272 PNSTERPVFVNPKQYQRIIKRRLARARLEEMGRLSRERQPYLHESRHKHAVRRPRGPRGRFLTKEE 337          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: ELU42758.1 (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B domain-containing protein [Rhizoctonia solani AG-1 IA])

HSP 1 Score: 91.7 bits (226), Expect = 4.400e-15
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 0
Query:  117 TTQSEGLEALIAAQEAVGPPSLAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEE 209
            T  S G  +  AA++      L  +P++VN KQY RI+KRR ARARLE   ++  ERKP+LH+SRH+HA++RPRGPGGRFLT EE  A + +
Sbjct:   11 TADSVGSTSPTAAEQDDEHEVLDEEPLYVNAKQYHRILKRRSARARLEEVHRLSKERKPYLHESRHKHAMRRPRGPGGRFLTAEEIAALESK 102          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: KNE95367.1 (hypothetical protein PSTG_11351 [Puccinia striiformis f. sp. tritici PST-78])

HSP 1 Score: 91.7 bits (226), Expect = 4.400e-15
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 0
Query:  141 QPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEE 202
            +P+FVNPKQY+RIMKRR ARARLE   ++  ER+P+LH+SRH+HA++RPRGP GRFLTKEE
Sbjct:  102 RPVFVNPKQYDRIMKRRLARARLEEMGRLSRERQPYLHESRHKHAVRRPRGPRGRFLTKEE 162          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: ORY95662.1 (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B-domain-containing protein [Syncephalastrum racemosum])

HSP 1 Score: 91.7 bits (226), Expect = 4.400e-15
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 0
Query:  129 AQEAVGPPSLAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEEQARLEAPVTAAAKGGGGVGEEGDGEEGRRIHQNARTSKP 248
            A+EA   P+ A +P++VN KQY RI+KRR ARARLE   ++   RKP+LH+SRH HA++RPRGPGGRFLT +E +A  E++ +L           G   E+  G++ +    ++R+SKP
Sbjct:   79 AEEAAAAPT-AEEPLYVNAKQYHRILKRRAARARLEEISRISKARKPYLHESRHRHAMRRPRGPGGRFLTAQE-VAQLEKEGKLP----------GHNPEDDKGQDMKPSESSSRSSKP 185          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: POW01483.1 (hypothetical protein PSHT_12521 [Puccinia striiformis])

HSP 1 Score: 91.7 bits (226), Expect = 4.400e-15
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 0
Query:  141 QPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEE 202
            +P+FVNPKQY+RIMKRR ARARLE   ++  ER+P+LH+SRH+HA++RPRGP GRFLTKEE
Sbjct:  103 RPVFVNPKQYDRIMKRRLARARLEEMGRLSRERQPYLHESRHKHAVRRPRGPRGRFLTKEE 163          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: EJD37966.1 (hypothetical protein AURDEDRAFT_32547, partial [Auricularia subglabra TFB-10046 SS5])

HSP 1 Score: 91.3 bits (225), Expect = 5.700e-15
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0
Query:  138 LAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEEQ 210
            L  +P++VN KQY RI+KRR ARARLE   ++  +RKP+LH+SRH+HA++RPRGPGGRFLT EER A +  Q
Sbjct:    1 LDDEPLYVNAKQYNRIIKRRLARARLEELHRLSRQRKPYLHESRHKHAMRRPRGPGGRFLTAEERAALERSQ 72          
BLAST of NO04G04190 vs. NCBI_GenBank
Match: KIJ49567.1 (hypothetical protein M422DRAFT_27935 [Sphaerobolus stellatus SS14])

HSP 1 Score: 90.9 bits (224), Expect = 7.500e-15
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 0
Query:  136 PSLAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEEQARLEA 215
            PS+  +P++VN KQY RI+KRR ARARLE   ++  +RKP+LH+SRH+HA++RPRGPGGRFLT EE  A  +++A  EA
Sbjct:  153 PSMDEEPLYVNAKQYNRILKRRVARARLEELHRLSKQRKPYLHESRHKHAMRRPRGPGGRFLTAEEIAA--QQKAAAEA 229          
The following BLAST results are available for this feature:
BLAST of NO04G04190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28755.11.500e-3678.18transcriptional activator hap2 [Nannochloropsis ga... [more]
KDN38107.18.800e-1654.44LOW QUALITY PROTEIN: hypothetical protein RSAG8_09... [more]
OAQ22923.13.300e-1548.57hypothetical protein K457DRAFT_264066 [Mortierella... [more]
XP_003332222.24.400e-1565.15hypothetical protein PGTG_14518 [Puccinia graminis... [more]
ELU42758.14.400e-1552.17CCAAT-binding transcription factor (CBF-B/NF-YA) s... [more]
KNE95367.14.400e-1570.49hypothetical protein PSTG_11351 [Puccinia striifor... [more]
ORY95662.14.400e-1545.38CCAAT-binding transcription factor (CBF-B/NF-YA) s... [more]
POW01483.14.400e-1570.49hypothetical protein PSHT_12521 [Puccinia striifor... [more]
EJD37966.15.700e-1561.11hypothetical protein AURDEDRAFT_32547, partial [Au... [more]
KIJ49567.17.500e-1558.23hypothetical protein M422DRAFT_27935 [Sphaerobolus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009367NSK009367Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04190.1NO04G04190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579466gene_2205Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g150gene1790Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04190.1NO04G04190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04190 ID=NO04G04190|Name=NO04G04190|organism=Nannochloropsis oceanica|type=gene|length=1476bp
GCTCCTCAAGAGACATACCGCCTTGTAAGTCGGGCTCATCTTTCATTTGC
ATGCTGTCCCTCCAAGTCTAGTACGTCCCCCTATTCCGCGAGTCGGCGAC
GAAGAAGCAGCAAAGCCTCTCGCTTTATTCTACAACACCAACCCACACGT
CTCACGCCTTTCAACCCCTTCTCAGACAGAATACAGCAGCAGGTGGGATG
GACAGCGCCAGGGACGGTGGTGGTGGCGGTGGAGTGGATGGAAGGAGGCA
GCAGCTGCCGGGCACAACAACATCAGGCGTGGAAGGAGCATCGTATCCCA
TGTACCCTTTCGCCATGGTGTACCAAACGACCAACCCCGACCAGCACCAA
GCAGTCATGACAATGAGTAATGCAGGGGGTATGACTGCAGGGGGTAGTGG
CGTCGGCAGCGGTGATGGCATCAGTAACAACATGGGTTATTACGCCAGCC
AGCAGCAGCATCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAACATGTT
TTCGAACACGGCGGCGGGGGGGGAATAAATTTTTATGACACCATGACAAC
ACAATCGGAAGGGCTCGAAGCGTTGATTGCCGCCCAAGAAGCGGTGGGCC
CGCCCTCCCTGGCACCACAACCCATTTTTGTCAACCCCAAGCAATACGAA
CGCATCATGAAGCGACGCGAGGCACGGGCTCGATTGGAGAACCACCGGAA
GGTCGTCGCAGAACGGAAGCCCTTTCTTCATAAATCTAGGCACGAGCATG
CCATCAAGCGACCTCGGGGGCCTGGAGGTCGGTTTTTGACCAAGGAAGAA
CGCATCGCATGGGATGAGGAGCAAGCACGGCTCGAGGCGCCAGTGACGGC
TGCTGCGAAAGGAGGAGGAGGGGTGGGAGAAGAAGGCGATGGTGAGGAAG
GGAGGCGCATACACCAAAATGCGCGTACATCGAAGCCATCCCGCGCAATT
TTGGCTCCGCAGCCCGTGGGGATATATCCTTCAGCCCCAGAGCAACAACG
ACAACGAAGACAGCACCACCCTTCCCATAGCCATTCCTCCTCCTCGTCCT
CCCCGGCCTCCTTCTCTTCCTCTTGGGACCCGGTGGACAAGGGACTGAAG
CAGCCCACTCGGTCATGATACCATATTCCCGAGCATGCAACCAGTAGGAA
GAGATGCCTCTCTCCCCCGTCCCCCCCTTCACCCTCCTTTTACCCACAAA
ATGAAAAAGCGTCGTCTCTCTTTTTCAATGCCCTCCCATGCAGGAAGCCA
CCCCAAAAATTAGATATGAGCAATGTATATGTCTCTGGTTCATAGATGCC
ACAAACCAAAGGAAGAAAAACGAAGTTTTGAAACAACGTCAACGGCCCAA
CGTCGTGTCAGCCTTGTCCGTGTGTGAGAGAGTGACAGAGTGTCTGCCCG
TCATATGGGGACAATTTACTCCCGCCCCTTTCATCAAGAGCCCGTCAACA
ACAAACAAAGGACTCATATCAATGGC
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protein sequence of NO04G04190.1

>NO04G04190.1-protein ID=NO04G04190.1-protein|Name=NO04G04190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MDSARDGGGGGGVDGRRQQLPGTTTSGVEGASYPMYPFAMVYQTTNPDQH
QAVMTMSNAGGMTAGGSGVGSGDGISNNMGYYASQQQHQQQQQQQQQQQH
VFEHGGGGGINFYDTMTTQSEGLEALIAAQEAVGPPSLAPQPIFVNPKQY
ERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKE
ERIAWDEEQARLEAPVTAAAKGGGGVGEEGDGEEGRRIHQNARTSKPSRA
ILAPQPVGIYPSAPEQQRQRRQHHPSHSHSSSSSSPASFSSSWDPVDKGL
KQPTRS*
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Synonyms
Publications