NO04G04190.1, NO04G04190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04190.1
Unique NameNO04G04190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr4:1142758..1144233 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1142758..1144233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04190.1 vs.
Match: EWM28755.1 (transcriptional activator hap2 [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 4.200e-34
Identity = 113/220 (51.36%), Postives = 125/220 (56.82%), Query Frame = 0 
Query:    1 MDSARDGGGGGGVDGRRQQLPGTTTSGVEGASYPMYPFAMVYQTTNPDQHQAVMTMSNAGGMTAGGSGVGSGDGISNNMGYYASQQQHQQQQQQQQQQQHVFEHGGGGGINFYDTMTTQSEGLEALIAAQEAVGPPSLAPQPIFVNPKQYERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEEQARLEAPVTAAA 221
            MD A  G  G    G  ++      S  E  S  M   A  YQ TN   +  +   + A  M     G GS          +       QQ Q+ Q QQ  +      G NFYD  + Q EG E L A QEA G   L PQPIFVNPKQYERIMKRREARARLENHRK+ AERKPFLHKSRH HA+KRPRGPGGRFLTKEERIAWDEEQA+LE   T  A
Sbjct:    1 MDGAETGSVGDSDSGGGRKKIVRPCSSAE-TSLSMDVTATSYQGTN--FNHMLSHGAPASAMVETHDGEGSLCPFPFQPPPHQQHNLQYQQPQEHQMQQTYYGQMNDDGNNFYDH-SPQMEGFEPLGAPQEAAGS-DLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMGA 215
The following BLAST results are available for this feature:
BLAST of NO04G04190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28755.14.200e-3451.36transcriptional activator hap2 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04190NO04G04190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04190.1NO04G04190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04190.1.cds1NO04G04190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04190.1 ID=NO04G04190.1|Name=NO04G04190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
GCTCCTCAAGAGACATACCGCCTTGTAAGTCGGGCTCATCTTTCATTTGC
ATGCTGTCCCTCCAAGTCTAGTACGTCCCCCTATTCCGCGAGTCGGCGAC
GAAGAAGCAGCAAAGCCTCTCGCTTTATTCTACAACACCAACCCACACGT
CTCACGCCTTTCAACCCCTTCTCAGACAGAATACAGCAGCAGGTGGGATG
GACAGCGCCAGGGACGGTGGTGGTGGCGGTGGAGTGGATGGAAGGAGGCA
GCAGCTGCCGGGCACAACAACATCAGGCGTGGAAGGAGCATCGTATCCCA
TGTACCCTTTCGCCATGGTGTACCAAACGACCAACCCCGACCAGCACCAA
GCAGTCATGACAATGAGTAATGCAGGGGGTATGACTGCAGGGGGTAGTGG
CGTCGGCAGCGGTGATGGCATCAGTAACAACATGGGTTATTACGCCAGCC
AGCAGCAGCATCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAACATGTT
TTCGAACACGGCGGCGGGGGGGGAATAAATTTTTATGACACCATGACAAC
ACAATCGGAAGGGCTCGAAGCGTTGATTGCCGCCCAAGAAGCGGTGGGCC
CGCCCTCCCTGGCACCACAACCCATTTTTGTCAACCCCAAGCAATACGAA
CGCATCATGAAGCGACGCGAGGCACGGGCTCGATTGGAGAACCACCGGAA
GGTCGTCGCAGAACGGAAGCCCTTTCTTCATAAATCTAGGCACGAGCATG
CCATCAAGCGACCTCGGGGGCCTGGAGGTCGGTTTTTGACCAAGGAAGAA
CGCATCGCATGGGATGAGGAGCAAGCACGGCTCGAGGCGCCAGTGACGGC
TGCTGCGAAAGGAGGAGGAGGGGTGGGAGAAGAAGGCGATGGTGAGGAAG
GGAGGCGCATACACCAAAATGCGCGTACATCGAAGCCATCCCGCGCAATT
TTGGCTCCGCAGCCCGTGGGGATATATCCTTCAGCCCCAGAGCAACAACG
ACAACGAAGACAGCACCACCCTTCCCATAGCCATTCCTCCTCCTCGTCCT
CCCCGGCCTCCTTCTCTTCCTCTTGGGACCCGGTGGACAAGGGACTGAAG
CAGCCCACTCGGTCATGATACCATATTCCCGAGCATGCAACCAGTAGGAA
GAGATGCCTCTCTCCCCCGTCCCCCCCTTCACCCTCCTTTTACCCACAAA
ATGAAAAAGCGTCGTCTCTCTTTTTCAATGCCCTCCCATGCAGGAAGCCA
CCCCAAAAATTAGATATGAGCAATGTATATGTCTCTGGTTCATAGATGCC
ACAAACCAAAGGAAGAAAAACGAAGTTTTGAAACAACGTCAACGGCCCAA
CGTCGTGTCAGCCTTGTCCGTGTGTGAGAGAGTGACAGAGTGTCTGCCCG
TCATATGGGGACAATTTACTCCCGCCCCTTTCATCAAGAGCCCGTCAACA
ACAAACAAAGGACTCATATCAATGGC
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protein sequence of NO04G04190.1

>NO04G04190.1-protein ID=NO04G04190.1-protein|Name=NO04G04190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MDSARDGGGGGGVDGRRQQLPGTTTSGVEGASYPMYPFAMVYQTTNPDQH
QAVMTMSNAGGMTAGGSGVGSGDGISNNMGYYASQQQHQQQQQQQQQQQH
VFEHGGGGGINFYDTMTTQSEGLEALIAAQEAVGPPSLAPQPIFVNPKQY
ERIMKRREARARLENHRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKE
ERIAWDEEQARLEAPVTAAAKGGGGVGEEGDGEEGRRIHQNARTSKPSRA
ILAPQPVGIYPSAPEQQRQRRQHHPSHSHSSSSSSPASFSSSWDPVDKGL
KQPTRS*
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mRNA from alignment at chr4:1142758..1144233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04190.1 ID=NO04G04190.1|Name=NO04G04190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp|location=Sequence derived from alignment at chr4:1142758..1144233- (Nannochloropsis oceanica)
GCTCCTCAAGAGACATACCGCCTTGTAAGTCGGGCTCATCTTTCATTTGC
ATGCTGTCCCTCCAAGTCTAGTACGTCCCCCTATTCCGCGAGTCGGCGAC
GAAGAAGCAGCAAAGCCTCTCGCTTTATTCTACAACACCAACCCACACGT
CTCACGCCTTTCAACCCCTTCTCAGACAGAATACAGCAGCAGGTGGGATG
GACAGCGCCAGGGACGGTGGTGGTGGCGGTGGAGTGGATGGAAGGAGGCA
GCAGCTGCCGGGCACAACAACATCAGGCGTGGAAGGAGCATCGTATCCCA
TGTACCCTTTCGCCATGGTGTACCAAACGACCAACCCCGACCAGCACCAA
GCAGTCATGACAATGAGTAATGCAGGGGGTATGACTGCAGGGGGTAGTGG
CGTCGGCAGCGGTGATGGCATCAGTAACAACATGGGTTATTACGCCAGCC
AGCAGCAGCATCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAACATGTT
TTCGAACACGGCGGCGGGGGGGGAATAAATTTTTATGACACCATGACAAC
ACAATCGGAAGGGCTCGAAGCGTTGATTGCCGCCCAAGAAGCGGTGGGCC
CGCCCTCCCTGGCACCACAACCCATTTTTGTCAACCCCAAGCAATACGAA
CGCATCATGAAGCGACGCGAGGCACGGGCTCGATTGGAGAACCACCGGAA
GGTCGTCGCAGAACGGAAGCCCTTTCTTCATAAATCTAGGCACGAGCATG
CCATCAAGCGACCTCGGGGGCCTGGAGGTCGGTTTTTGACCAAGGAAGAA
CGCATCGCATGGGATGAGGAGCAAGCACGGCTCGAGGCGCCAGTGACGGC
TGCTGCGAAAGGAGGAGGAGGGGTGGGAGAAGAAGGCGATGGTGAGGAAG
GGAGGCGCATACACCAAAATGCGCGTACATCGAAGCCATCCCGCGCAATT
TTGGCTCCGCAGCCCGTGGGGATATATCCTTCAGCCCCAGAGCAACAACG
ACAACGAAGACAGCACCACCCTTCCCATAGCCATTCCTCCTCCTCGTCCT
CCCCGGCCTCCTTCTCTTCCTCTTGGGACCCGGTGGACAAGGGACTGAAG
CAGCCCACTCGGTCATGATACCATATTCCCGAGCATGCAACCAGTAGGAA
GAGATGCCTCTCTCCCCCGTCCCCCCCTTCACCCTCCTTTTACCCACAAA
ATGAAAAAGCGTCGTCTCTCTTTTTCAATGCCCTCCCATGCAGGAAGCCA
CCCCAAAAATTAGATATGAGCAATGTATATGTCTCTGGTTCATAGATGCC
ACAAACCAAAGGAAGAAAAACGAAGTTTTGAAACAACGTCAACGGCCCAA
CGTCGTGTCAGCCTTGTCCGTGTGTGAGAGAGTGACAGAGTGTCTGCCCG
TCATATGGGGACAATTTACTCCCGCCCCTTTCATCAAGAGCCCGTCAACA
ACAAACAAAGGACTCATATCAATGGC
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Coding sequence (CDS) from alignment at chr4:1142758..1144233-

>NO04G04190.1 ID=NO04G04190.1|Name=NO04G04190.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr4:1142758..1144233- (Nannochloropsis oceanica)
ATGGACAGCGCCAGGGACGGTGGTGGTGGCGGTGGAGTGGATGGAAGGAG
GCAGCAGCTGCCGGGCACAACAACATCAGGCGTGGAAGGAGCATCGTATC
CCATGTACCCTTTCGCCATGGTGTACCAAACGACCAACCCCGACCAGCAC
CAAGCAGTCATGACAATGAGTAATGCAGGGGGTATGACTGCAGGGGGTAG
TGGCGTCGGCAGCGGTGATGGCATCAGTAACAACATGGGTTATTACGCCA
GCCAGCAGCAGCATCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAACAT
GTTTTCGAACACGGCGGCGGGGGGGGAATAAATTTTTATGACACCATGAC
AACACAATCGGAAGGGCTCGAAGCGTTGATTGCCGCCCAAGAAGCGGTGG
GCCCGCCCTCCCTGGCACCACAACCCATTTTTGTCAACCCCAAGCAATAC
GAACGCATCATGAAGCGACGCGAGGCACGGGCTCGATTGGAGAACCACCG
GAAGGTCGTCGCAGAACGGAAGCCCTTTCTTCATAAATCTAGGCACGAGC
ATGCCATCAAGCGACCTCGGGGGCCTGGAGGTCGGTTTTTGACCAAGGAA
GAACGCATCGCATGGGATGAGGAGCAAGCACGGCTCGAGGCGCCAGTGAC
GGCTGCTGCGAAAGGAGGAGGAGGGGTGGGAGAAGAAGGCGATGGTGAGG
AAGGGAGGCGCATACACCAAAATGCGCGTACATCGAAGCCATCCCGCGCA
ATTTTGGCTCCGCAGCCCGTGGGGATATATCCTTCAGCCCCAGAGCAACA
ACGACAACGAAGACAGCACCACCCTTCCCATAGCCATTCCTCCTCCTCGT
CCTCCCCGGCCTCCTTCTCTTCCTCTTGGGACCCGGTGGACAAGGGACTG
AAGCAGCCCACTCGGTCATGA
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Synonyms
Publications