NO04G04090, NO04G04090 (gene) Nannochloropsis oceanica

Overview
NameNO04G04090
Unique NameNO04G04090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1894
Alignment locationchr4:1111116..1113009 -

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Properties
Property NameValue
DescriptionZinc ion binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1111116..1113009 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012935Znf_C3HC-like
Homology
BLAST of NO04G04090 vs. NCBI_GenBank
Match: EWM28671.1 (zinc ion binding protein [Nannochloropsis gaditana])

HSP 1 Score: 337.4 bits (864), Expect = 5.800e-89
Identity = 183/377 (48.54%), Postives = 225/377 (59.68%), Query Frame = 0
Query:   27 KCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNSEPAPDILSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVKVPEEFNKLMAGCKIQGEGVGEGRDGVGSLTLEALARRVEECIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALELKGNGLILALHGWEAGPPPR--QPESGGRGGR---GWALICGMCGRRVEVGRVVDRRSSLGSGRMMEGGGEKGEDVGRAKARRVGGMAGPAAFDVMNQHRWWCAWVSRGLDEKGQPGWRLTLKTLVGRMRRMVELG--KLMEDEGDSG-------DRSWGVGSSSSSYARAKRLLDGM 390
            KCRPWSEADFFHRLRTFTPQ WFGKSL + PPRCAAQGWVN   DTL C++CQA LT     EPAPD+LS+SH++TCPW  QACE +VSHFPLVTA+ LL+H A R+ G R LL+AY G  ++ +PEE   L+ G K++     +       LTL+ LA RV++ ++                               + K   L LAL GWEA P  +    +SGG  GR    W L CG+CGR ++  R+ DRR S G GR  EG G K E + R KAR V    GP  FD ++QHRWWC WVSRG+DEKG  GWR  LK +VGRMR++ +LG   L E E D G       D S    S SS Y++ K L+D M
Sbjct:   79 KCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQS----ARLTLDILADRVQDWLQDVASAAPGVGEVGGE----------------DEKRGALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEG-KEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM 434          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: EPS69993.1 (hypothetical protein M569_04773, partial [Genlisea aurea])

HSP 1 Score: 90.9 bits (224), Expect = 9.500e-15
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 0
Query:   28 CRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPS-------NSEPAPDI----LSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLL 141
            C+PW   DFF RL TF    WF K  +++P  CA +GW+NS  DT+ C  C A L   +         E A  +    L + H + CPW + AC  D++HFP V++  L     RR+  +  ++
Sbjct:   78 CKPWDRDDFFSRLSTFKSISWFAKPQVLSPVECARRGWINSDIDTVVCSYCGARLLFATPLSWTQQQVEKAAVVFSLKLEAGHKMLCPWINNACAEDIAHFPDVSSRVLAEDYKRRITSLSQII 201          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: EYU19018.1 (hypothetical protein MIMGU_mgv1a003304mg [Erythranthe guttata])

HSP 1 Score: 88.6 bits (218), Expect = 4.700e-14
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 0
Query:   28 CRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNS-------EPAPDI----LSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPL 140
            CRPW   D   RL TF    WF K  +V+P  CA +GWVN  TDT+ C  C + L   + S       E A  +    L S H + CPW + ACE +++ FP ++ + L+    +R+  +  L
Sbjct:   67 CRPWDRDDLLRRLSTFKSMSWFAKPQVVSPLECARRGWVNVDTDTIACASCDSRLFFSTPSTWTRQQVEKAAMVFSLKLESGHKLLCPWTNSACEEELAQFPTLSRDGLIEDYKKRVFSLSQL 189          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: XP_012827682.1 (PREDICTED: nuclear-interacting partner of ALK isoform X1 [Erythranthe guttata])

HSP 1 Score: 88.6 bits (218), Expect = 4.700e-14
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 0
Query:   28 CRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNS-------EPAPDI----LSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPL 140
            CRPW   D   RL TF    WF K  +V+P  CA +GWVN  TDT+ C  C + L   + S       E A  +    L S H + CPW + ACE +++ FP ++ + L+    +R+  +  L
Sbjct:   68 CRPWDRDDLLRRLSTFKSMSWFAKPQVVSPLECARRGWVNVDTDTIACASCDSRLFFSTPSTWTRQQVEKAAMVFSLKLESGHKLLCPWTNSACEEELAQFPTLSRDGLIEDYKKRVFSLSQL 190          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: XP_012827683.1 (PREDICTED: nuclear-interacting partner of ALK isoform X2 [Erythranthe guttata])

HSP 1 Score: 88.6 bits (218), Expect = 4.700e-14
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 0
Query:   28 CRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNS-------EPAPDI----LSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPL 140
            CRPW   D   RL TF    WF K  +V+P  CA +GWVN  TDT+ C  C + L   + S       E A  +    L S H + CPW + ACE +++ FP ++ + L+    +R+  +  L
Sbjct:   67 CRPWDRDDLLRRLSTFKSMSWFAKPQVVSPLECARRGWVNVDTDTIACASCDSRLFFSTPSTWTRQQVEKAAMVFSLKLESGHKLLCPWTNSACEEELAQFPTLSRDGLIEDYKKRVFSLSQL 189          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: OTG07404.1 (putative zinc finger, C3HC-like protein [Helianthus annuus])

HSP 1 Score: 88.6 bits (218), Expect = 4.700e-14
Identity = 41/126 (32.54%), Postives = 57/126 (45.24%), Query Frame = 0
Query:   21 IDESLHKCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPS----------NSEPAPDILSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGI 137
            +  S   CRPW   D   RL TF+P +WFGK    +   CA +GWVN   DT++C+ C   LT  +          N E   ++L   H+ TCPW   +C   +  FP      L+     R  G+
Sbjct:   78 LGSSKPSCRPWERGDLLRRLSTFSPANWFGKPKAASSLSCARRGWVNVDVDTIQCEACGENLTYDAQDSWARTEGENGEEFANLLDEGHNATCPWRGNSCAASLVQFPPTPPSALIGGYKDRCDGL 203          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: XP_021993022.1 (uncharacterized protein LOC110889765 [Helianthus annuus] >XP_021993023.1 uncharacterized protein LOC110889765 [Helianthus annuus] >XP_021993024.1 uncharacterized protein LOC110889765 [Helianthus annuus])

HSP 1 Score: 88.6 bits (218), Expect = 4.700e-14
Identity = 41/126 (32.54%), Postives = 57/126 (45.24%), Query Frame = 0
Query:   21 IDESLHKCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPS----------NSEPAPDILSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGI 137
            +  S   CRPW   D   RL TF+P +WFGK    +   CA +GWVN   DT++C+ C   LT  +          N E   ++L   H+ TCPW   +C   +  FP      L+     R  G+
Sbjct:   78 LGSSKPSCRPWERGDLLRRLSTFSPANWFGKPKAASSLSCARRGWVNVDVDTIQCEACGENLTYDAQDSWARTEGENGEEFANLLDEGHNATCPWRGNSCAASLVQFPPTPPSALIGGYKDRCDGL 203          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: XP_011072908.1 (uncharacterized protein LOC105158011 [Sesamum indicum])

HSP 1 Score: 88.2 bits (217), Expect = 6.100e-14
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 0
Query:   28 CRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNS-------EPAPDI----LSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVKVPEEFNKLMA 161
            CRPW   D F RL TF    WF K  +V+P  CA +GW+N   DT+ C  C   L   + S       E A  +    L S H   CPW + AC  D++ FP+V+   L+    +R+  +  L+      L V +P   + +M+
Sbjct:   75 CRPWDRDDLFRRLSTFKSMTWFAKPQVVSPLECARRGWLNVDMDTIACVSCDTRLLFSTPSAWTQQQVEKAAMVFSLKLDSGHKSLCPWINNACTEDIAKFPIVSRADLIEDYKKRLFSLSQLIA-----LPVILPVAIDNIMS 213          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: PIN05762.1 (hypothetical protein CDL12_21697 [Handroanthus impetiginosus])

HSP 1 Score: 88.2 bits (217), Expect = 6.100e-14
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 0
Query:   27 KCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNS-------EPAPDI----LSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLL 141
            +CRPW   D F RL +F    WF K  +V+P  CA +GWVN   DT+ C  C A L   + S       E A  +    L S H + CPW + AC  +++ FP+V+   L+    +R   +  L+
Sbjct:   76 RCRPWDRNDLFQRLSSFKSMTWFAKPQVVSPLECARRGWVNVDMDTIACPSCDARLLFSTPSTWGQRQVEKAAMVFSLKLESGHKLLCPWINNACTEELAQFPIVSRAVLVEDYKKRFFSLSQLI 200          
BLAST of NO04G04090 vs. NCBI_GenBank
Match: XP_006846088.1 (uncharacterized protein LOC18435993 [Amborella trichopoda] >ERN07763.1 hypothetical protein AMTR_s00012p00097440 [Amborella trichopoda])

HSP 1 Score: 87.8 bits (216), Expect = 8.000e-14
Identity = 44/123 (35.77%), Postives = 55/123 (44.72%), Query Frame = 0
Query:   28 CRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTL--PSNSEPAPD---------ILSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPL 140
            CRPW   DF  RL TF    WF K  +V P  CA +GW+N   DT+ C+ C A L    PS+  P  D          L   H   CPW    CE  ++HFP V    L+    +R   +  L
Sbjct:   88 CRPWDRGDFLRRLSTFKAVTWFAKPKIVNPVNCARRGWINVERDTIACEACGARLLFCTPSSWTPQQDEKAAAVFSLKLDHGHKPLCPWKDNICEESLAHFPRVPVPTLIKSYRKRFDALAHL 210          
The following BLAST results are available for this feature:
BLAST of NO04G04090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28671.15.800e-8948.54zinc ion binding protein [Nannochloropsis gaditana... [more]
EPS69993.19.500e-1534.68hypothetical protein M569_04773, partial [Genlisea... [more]
EYU19018.14.700e-1434.96hypothetical protein MIMGU_mgv1a003304mg [Erythran... [more]
XP_012827682.14.700e-1434.96PREDICTED: nuclear-interacting partner of ALK isof... [more]
XP_012827683.14.700e-1434.96PREDICTED: nuclear-interacting partner of ALK isof... [more]
OTG07404.14.700e-1432.54putative zinc finger, C3HC-like protein [Helianthu... [more]
XP_021993022.14.700e-1432.54uncharacterized protein LOC110889765 [Helianthus a... [more]
XP_011072908.16.100e-1432.64uncharacterized protein LOC105158011 [Sesamum indi... [more]
PIN05762.16.100e-1434.40hypothetical protein CDL12_21697 [Handroanthus imp... [more]
XP_006846088.18.000e-1435.77uncharacterized protein LOC18435993 [Amborella tri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009379NSK009379Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04090.2NO04G04090.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G04090.1NO04G04090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100002g140gene1799Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04090.2NO04G04090.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G04090.1NO04G04090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04090 ID=NO04G04090|Name=NO04G04090|organism=Nannochloropsis oceanica|type=gene|length=1894bp
ACACAAGCGTCTTCGCCATCATCGCCCCTCAAGAATTAAATGCTCAACAT
CCCACAGCATCCCACGCGCTGTCCATCGGTGCAACAAGACGACGTACATT
AGTAGCGACATCAGTCCTCGCAATGGCCACAACGCGGCGCGATCCCAGTC
AGGAAGACGTGGATGAAGCATCCTCGACTCTACGTGCCTGCGTCGATCGA
GACCTTCTGGCCGAAATTTGCCATGGGGACAGCCTCGGAGCTGGTAACCA
CCGCGCATCCACGCACTCCTCGTTGGTATCGACATCATCTCCGCCTTGGA
AAGGTACGTGTGGCGGCGGTATAGTGGTTTGTGCTGATGCAATGCGTGGA
TAGAATAGTTTCTTTGAGCATCGCTTTCATCTTTACGCCCACGGTCTGCC
TCAACTTTCAACGCCCTTGTGTCCACACGCCCTCAGTAAGCAGTAACATG
GAATTACGCTGCATAACAGCACATCGATCACCACAAAGCATTCCATATGC
ATGCCCTCACTGGTTATATCCTCCTCCTTTCCGAACACCGACATATCTCT
CCCGAACATAATAGACGAGTCCCTCCACAAATGCCGTCCTTGGTCCGAAG
CAGATTTCTTCCACCGCCTTCGCACATTCACACCACAACATTGGTTTGGC
AAGAGCTTGCTCGTGGCACCCCCACGATGCGCGGCGCAGGGATGGGTAAA
CTCGTCGACGGATACGTTGGAATGTCAAATgtacgtcatggaatggcttc
gtcggaaatacgtcgcctcccctctttctgtatatttggtgtttatgtca
gctcatgatcatttgtttgatatcagcatgaagataaaaacgaagatgat
ttttctcattcattccctccatcatcctcttcctttcgctgtacaaaatg
cagATGTCAAGCCACCCTCACCCTTCCCAGCAACTCGGAACCCGCTCCTG
ACATCCTCTCCTCCTCCCACTCCATCACCTGTCCCTGGGCCCACCAAGCT
TGCGAGCCCGATGTTTCACATTTCCCTCTTGTAACCGCTGAGTGTTTGCT
TACTCATACGGCGCGTCGCATGGGCGGCATTCGTCCTCTTCTCCAAGCAT
ACAAAGGAGATTTAACAGTTAAAGTACCTGAGGAATTCAACAAGCTGATG
GCTGGGTGTAAGATTCAGGGGGAAGGAGTGGGGGAGGGGAGAGACGGAGT
GGGTAGTTTGACCCTGGAGGCGCTGGCACGGCGGGTGGAGGAGTGTATTG
AGGATGATGCTGGTGGTGGTACAGCTGGTGCTGGAGCAAGGGAAGGAGGA
GGGGTTACGGTGGAGGAGGAGAAGAGGGAAGACGAGCAAGCATTGGAGTT
GAAGGGGAATGGGTTGATATTGGCTTTGCATGGATGGGAGGCAGGGCCTC
CACCACGGCAGCCAGAGAGTGGAGGAAGAGGTGGAAGAGGTTGGGCGTTA
ATCTGTGGTATGTGCGGACGTCGGGTAGAAGTGGGGAGAGTGGTGGATCG
AAGGAGCAGCTTGGGGAGTGGTCGTATGATGGAAGGAGGGGGAGAAAAAG
GCGAGGATGTAGGAAGGGCCAAGGCGCGACGAGTTGGAGGGATGGCAGGA
CCCGCGGCGTTTGATGTCATGAACCAGCATCGATGGTGGTGTGCGTGGGT
GTCGCGGGGGCTGGATGAGAAGGGCCAGCCGGGATGGCGGCTGACGCTCA
AGACATTGGTGGGCCGCATGCGTCGGATGGTGGAGCTAGGGAAATTGATG
GAGGACGAGGGTGATAGTGGGGATAGGAGTTGGGGTGTGGGGTCGTCGTC
GTCGTCGTACGCACGAGCGAAGAGATTGCTTGATGGCATGTGATAATAAA
TAGAATTTGTCGGAAAGAAATTCAAGACAAAAGAGCTGCGTGAA
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protein sequence of NO04G04090.2

>NO04G04090.2-protein ID=NO04G04090.2-protein|Name=NO04G04090.2|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MPSLVISSSFPNTDISLPNIIDESLHKCRPWSEADFFHRLRTFTPQHWFG
KSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNSEPAPDILSSSHS
ITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVK
VPEEFNKLMAGCKIQGEGVGEGRDGVGSLTLEALARRVEECIEDDAGGGT
AGAGAREGGGVTVEEEKREDEQALELKGNGLILALHGWEAGPPPRQPESG
GRGGRGWALICGMCGRRVEVGRVVDRRSSLGSGRMMEGGGEKGEDVGRAK
ARRVGGMAGPAAFDVMNQHRWWCAWVSRGLDEKGQPGWRLTLKTLVGRMR
RMVELGKLMEDEGDSGDRSWGVGSSSSSYARAKRLLDGM*
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protein sequence of NO04G04090.1

>NO04G04090.1-protein ID=NO04G04090.1-protein|Name=NO04G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MATTRRDPSQEDVDEASSTLRACVDRDLLAEICHGDSLGAGNHRASTHSS
LVSTSSPPWKDESLHKCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCA
AQGWVNSSTDTLECQICQATLTLPSNSEPAPDILSSSHSITCPWAHQACE
PDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVKVPEEFNKLMAG
CKIQGEGVGEGRDGVGSLTLEALARRVEECIEDDAGGGTAGAGAREGGGV
TVEEEKREDEQALELKGNGLILALHGWEAGPPPRQPESGGRGGRGWALIC
GMCGRRVEVGRVVDRRSSLGSGRMMEGGGEKGEDVGRAKARRVGGMAGPA
AFDVMNQHRWWCAWVSRGLDEKGQPGWRLTLKTLVGRMRRMVELGKLMED
EGDSGDRSWGVGSSSSSYARAKRLLDGM*
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Synonyms
Publications