NO04G04010, NO04G04010 (gene) Nannochloropsis oceanica

Overview
NameNO04G04010
Unique NameNO04G04010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length696
Alignment locationchr4:1076401..1077096 +

Link to JBrowse

Properties
Property NameValue
DescriptionKinetochore protein spc25
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1076401..1077096 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013255Spc25
Homology
BLAST of NO04G04010 vs. NCBI_GenBank
Match: EWM28675.1 (kinetochore protein spc25 [Nannochloropsis gaditana])

HSP 1 Score: 268.5 bits (685), Expect = 2.000e-68
Identity = 173/231 (74.89%), Postives = 186/231 (80.52%), Query Frame = 0
Query:    1 MAATAEQLARSLTQDITETQARLDTWLESSKADLEGLETRHGKALAEMGAERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKEXXXXXXXXXXXXXXXXXXXXXXXXXAALGSLTSRQGEYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFKATIGSN 232
            MAATAEQLARS+ QDITETQARLD WLE+S+ADLEGLE RH KALAEM AERATLLARQAELK KT+EG RLS+Q                   XXXXXXXXXXXXXXXXXXXXXXXXX          G+YINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLD++NP RE+FFSVHIDE D+YRVEEC P LD  MV+GLV E+N+ANDFA FVKKMRRAFKATI SN
Sbjct:   16 MAATAEQLARSIAQDITETQARLDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATIKSN 246          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: GBG26012.1 (Kinetochore protein Spc25 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 100.1 bits (248), Expect = 9.300e-18
Identity = 70/214 (32.71%), Postives = 104/214 (48.60%), Query Frame = 0
Query:   31 KADLEGLETRHGKALAEMGAERAT-----------LLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKEXXXXXXXXXXXXXXXXXXXXXXXXXAALGSLTS-------RQGEYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFKA 227
            +A LE  E +     AEM  E A            L AR   L  + EE A +   +++ L+A + ++AAL ++                            LG+  +        Q   +  LTRG  +YK LGL+F+R D+ +LRL FTQ+D  +P REFFF + +D++D Y VE+  PA  VG +  L+  VN  NDF++FV+ MR  F+A
Sbjct:   24 RAKLEAREAQVRGFCAEMAEETAAHAGDAESKLEDLRARIEALAKEREELASMGWANEQRLAAQQKKVAALHDELDGLRTNYADVENAMQNANNRRTELLGTLGAKEADIEAERETQQHRVAQLTRGATLYKKLGLEFQRDDNTRLRLSFTQIDPRDPDREFFFVIFVDKDDCYHVEQVEPA--VGSISDLIRRVNATNDFSSFVRSMRTKFQA 235          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: GAX17091.1 (kinetochore protein Spc25, fungi type [Fistulifera solaris])

HSP 1 Score: 90.5 bits (223), Expect = 7.400e-15
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 0
Query:  133 INDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAF 225
            I+DLTRG++ YK+LGLDFER  D+KLR  FTQLD SNP R+F+F + + E D   +  C P +     E LV   NK  D   FV  MRRAF
Sbjct:  144 IDDLTRGIINYKYLGLDFERVPDDKLRFCFTQLDPSNPSRKFWFEMDVTELD-CSIPNCEPPIRSETREQLVQAFNKNEDMQEFVLGMRRAF 234          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: GAX25380.1 (kinetochore protein Spc25, fungi type [Fistulifera solaris])

HSP 1 Score: 88.6 bits (218), Expect = 2.800e-14
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0
Query:  133 INDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAF 225
            I+DLTRG++ YK+LGLDFER  ++KLR  FTQLD SNP R+F+F + + E D   +  C P +     E LV   NK  D   FV  MRRAF
Sbjct:  144 IDDLTRGIINYKYLGLDFERVPNDKLRFCFTQLDPSNPSRKFWFEMDVTELD-CSIPNCEPPIRSETREQLVQAFNKNEDMQEFVLGMRRAF 234          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: CBJ26988.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1 bits (209), Expect = 3.100e-13
Identity = 63/234 (26.92%), Postives = 114/234 (48.72%), Query Frame = 0
Query:    1 MAATAEQLARSLTQDITETQARLDTWLESSKADLEGLETRHGKALAEMGAERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKE-KEXXXXXXXXXXXXXXXXXXXXXXXXXAALGSLTSR---QGEYINDLTRGVVMYKHLGLDFERADDNK------LRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAF 225
            MA  A+++++ L  ++   + +L+ W+   +  L  +++ + + +    AE   L  R A+ K+ T   A  +   ++    ++ E+  L+E +E                         A  G + +R   + E ++ L +GV++Y+ LGL+FE  D         LRL+F Q+    P R F  +V ID+N +Y V EC PAL    +  ++ +VN++NDFA FV ++RR F
Sbjct:   12 MAEMADRMSKELRSEMHNAEVQLNNWVAEREQRLADVQSDYAQTMEARAAEVVEL--RNAD-KDTTARRAHCAAVVKKQEEQLQEEVKRLEELRETEREEMPAKLEVLGAEHQRIAKNLEAKQGEMLTRRHVKEEELSVLGKGVLLYRRLGLEFEGGDTGDDGSMKCLRLVFRQISRQEPERPFVIAVFIDDNGRYVVPECFPALPTEDLNRMLEDVNESNDFAKFVSRVRRGF 242          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: XP_004364432.1 (hypothetical protein CAOG_01564 [Capsaspora owczarzaki ATCC 30864] >KJE90223.1 hypothetical protein CAOG_001564 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 84.0 bits (206), Expect = 6.900e-13
Identity = 56/224 (25.00%), Postives = 99/224 (44.20%), Query Frame = 0
Query:    6 EQLARSLTQDITETQARLDTWLESSKADLEGLETRHGKALAEMGAERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKEXXXXXXXXXXXXXXXXXXXXXXXXXAALGSLTSRQGEYINDLTRGVVMY-KHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFKATI 229
            E+    L +D+      +D W +S   ++   + RH K + +     A L A   +L   +E G  L+ Q    ++   + ++ L++++                           L          + +LTRGV  + + LGL  +R   + L+ IF  +D  N  REF FSV IDE + Y V+ C P ++   + G+V ++N  N  + F+K +R+ FKA +
Sbjct:    7 ERSLEQLQEDMLTAARMVDNWADSQLKEMRHAQLRHTKTMEDDKENAAKLQASLKQLGEHSEAGQILASQQAAEIALSRSAVSQLQQQKELAMDTQNDIRQQIAAREQALVRETEMLSERERDAATSMKELTRGVQFFSERLGLKIQRTGKHHLQFIFRYIDPYNVNREFSFSVRIDEKNMYHVDVCEPMVE--DLAGMVAQLNDDNQLSVFIKNIRKKFKAMV 228          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: OQS01074.1 (hypothetical protein THRCLA_05777 [Thraustotheca clavata])

HSP 1 Score: 83.6 bits (205), Expect = 9.000e-13
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 0
Query:  131 EYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDEN-DQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFK 226
            + +++L +G+ +Y+ LGL  ++  +N L  IFTQLD +NP REF FS+ I++N D + VE CVP  +V  V  L+ ++NK  + +TFV+ MR  FK
Sbjct:  127 QVVDELMKGISLYQKLGLLIDKKRENNLAFIFTQLDPNNPNREFSFSLRIEDNPDVFLVENCVP--EVSDVNELLDQLNKTGNISTFVRAMRLRFK 220          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: GAY01031.1 (Hypothetical protein PINS_008867 [Pythium insidiosum])

HSP 1 Score: 83.6 bits (205), Expect = 9.000e-13
Identity = 67/223 (30.04%), Postives = 108/223 (48.43%), Query Frame = 0
Query:   12 LTQDITETQARLDTWLESSKADL-------EGLETRHGKALAEMGAERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKEXXXXXXXXXXXXXXXXXXXXXXXXXAALGSLTSRQGEYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHID-ENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFKA 227
            +TQ+I+ T+  L+ W++  K+ L       E  E  H +  A+   +R+       EL+   ++  R     Q  +  ++AE     +KE      X     X            A   SLT    E +N+LTRG+ MY  LGL FE+ +  ++ + FTQ+D+ NP REF F + +D + D +  +EC P   V  ++ L+   N+  DF+ F++ MRR FKA
Sbjct:   30 VTQNIS-TRQELERWIQEQKSRLLREKREHEFHEQEHTRLTADAEQQRSQXXXXLQELRTDCDDHERQVSVQQVEIEVLQAEKG---KKEPVLRELXEQNRSXDDELKRLTLEAQAQQTSLT----EQLNELTRGLEMYARLGLSFEQHNAEQIIVRFTQIDAQNPQREFSFRIRMDPQTDSFVADECEP--PVATLDALMQXXNETADFSRFIRSMRREFKA 242          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: XP_002178778.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49476.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 81.6 bits (200), Expect = 3.400e-12
Identity = 86/230 (37.39%), Postives = 133/230 (57.83%), Query Frame = 0
Query:   12 LTQDITETQARLDTWLESSKADLEGLETRHGKALA----EMGAERATLLARQ-------AELKNKTEEGARLSQQDQEAL---SAVEAEIAALKEKEXXXXXXXXXXXXXXXXXXXXXXXXXAALGSLTSRQGEYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDE-NDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFKA 227
            L + +  +++R++TW+E  KA  + +  R  +  A     +      LLA Q       +E ++ T++   L+ + +E L    AVE          XXXXXXXXXXXXXXXXXXXXXXXXX     + + +   + DLT+G+V Y++LG+DF++A DN ++  FTQLD + P R+F F + +D+ +DQY V+ C P +   ++  L+ ++N  +D   FV  MR AFKA
Sbjct:   17 LRESLILSRSRVETWVEHEKAQADAVYERSKQTRASHQHRIDQALTNLLALQLEGGLAVSETESTTKKEKNLAARKEELLREQEAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKQRVQASKQTTLEDLTKGIVNYQYLGIDFQKAQDNHMKFYFTQLDPTQPKRQFSFLLQVDDVDDQYIVDVCDPPIPEHILNELLSDLNADDDMLPFVIGMRHAFKA 246          
BLAST of NO04G04010 vs. NCBI_GenBank
Match: GAY01382.1 (Hypothetical protein PINS_009190 [Pythium insidiosum])

HSP 1 Score: 80.5 bits (197), Expect = 7.600e-12
Identity = 63/223 (28.25%), Postives = 105/223 (47.09%), Query Frame = 0
Query:   12 LTQDITETQARLDTWLESSKADL-------EGLETRHGKALAEMGAERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKEXXXXXXXXXXXXXXXXXXXXXXXXXAALGSLTSRQGEYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHID-ENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFKA 227
            +TQ+I+ T+  L+ W++  K+ L       E  E  H +  A+   +R         L+   ++  R     Q  +  ++AE     +KE                         A   SLT    E +N+LTRG+ MY  LGL FE+ +  ++ + FTQ+D+  P REF F + +D + D +  +EC P   V  ++ L+ ++N+  DF+ F++ MRR FKA
Sbjct:   30 VTQNIS-TRQELERWIQEQKSRLLREKREHEFHEQEHTRLTADAEQQRXXXXXXXXXLRTDCDDHERQVSVQQVEIEVLQAEKG---KKEPVLRELFEQNRSKDDELKRLTLEAQAQQTSLT----EQLNELTRGLEMYARLGLSFEQHNAEQIIVRFTQIDAQKPQREFSFRIRMDPQTDSFVADECEP--PVATLDALMQQMNETADFSRFIRSMRREFKA 242          
The following BLAST results are available for this feature:
BLAST of NO04G04010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28675.12.000e-6874.89kinetochore protein spc25 [Nannochloropsis gaditan... [more]
GBG26012.19.300e-1832.71Kinetochore protein Spc25 [Aurantiochytrium sp. FC... [more]
GAX17091.17.400e-1551.09kinetochore protein Spc25, fungi type [Fistulifera... [more]
GAX25380.12.800e-1450.00kinetochore protein Spc25, fungi type [Fistulifera... [more]
CBJ26988.13.100e-1326.92conserved unknown protein [Ectocarpus siliculosus][more]
XP_004364432.16.900e-1325.00hypothetical protein CAOG_01564 [Capsaspora owczar... [more]
OQS01074.19.000e-1342.71hypothetical protein THRCLA_05777 [Thraustotheca c... [more]
GAY01031.19.000e-1330.04Hypothetical protein PINS_008867 [Pythium insidios... [more]
XP_002178778.13.400e-1237.39predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAY01382.17.600e-1228.25Hypothetical protein PINS_009190 [Pythium insidios... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009394NSK009394Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04010.1NO04G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579390gene_2183Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g132gene1806Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04010.1NO04G04010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04010 ID=NO04G04010|Name=NO04G04010|organism=Nannochloropsis oceanica|type=gene|length=696bp
ATGGCCGCCACCGCCGAGCAGCTCGCTCGGTCACTCACCCAAGACATAAC
TGAGACTCAAGCACGCTTGGACACATGGCTCGAGAGCTCCAAAGCTGACC
TCGAAGGGCTTGAGACACGACACGGAAAAGCCCTAGCAGAGATGGGTGCC
GAACGTGCCACATTGCTGGCGCGGCAGGCCGAGCTCAAGAACAAGACGGA
GGAAGGGGCACGCCTTTCCCAACAGGACCAAGAAGCGTTATCAGCCGTAG
AAGCGGAAATCGCCGCACTGAAAGAGAAAGAAAGAGCATTACCCCAGGAA
CTGGCCACGGCGCGCGAGAGGGAAGAAGAGCTGCGACAGGTGCTGGCGGG
GAAAAGGGCAGCGCTGGGTTCCTTGACTTCGCGTCAGGGGGAATATATCA
ATGATTTGACCAGGGGGGTGGTGATGTACAAGCACCTTGGGTTGGATTTT
GAAAGGGCCGACGATAACAAGCTCAGGCTCATCTTTACACAGCTTGACTC
GAGTAACCCAGGGAGAGAATTTTTCTTCTCGGTACACATTGATGAGAACG
ACCAATATCGGGTAGAGGAGTGTGTGCCGGCGTTGGACGTGGGGATGGTA
GAGGGCTTGGTGGGGGAGGTTAATAAGGCGAATGATTTTGCAACGTTTGT
AAAAAAAATGCGAAGGGCGTTTAAGGCCACGATTGGATCGAATTGA
back to top

protein sequence of NO04G04010.1

>NO04G04010.1-protein ID=NO04G04010.1-protein|Name=NO04G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MAATAEQLARSLTQDITETQARLDTWLESSKADLEGLETRHGKALAEMGA
ERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKERALPQE
LATAREREEELRQVLAGKRAALGSLTSRQGEYINDLTRGVVMYKHLGLDF
ERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMV
EGLVGEVNKANDFATFVKKMRRAFKATIGSN*
back to top
Synonyms
Publications