NO04G04010.1, NO04G04010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04010.1
Unique NameNO04G04010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length696
Alignment locationchr4:1076401..1077096 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1076401..1077096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04010.1 vs.
Match: EWM28675.1 (kinetochore protein spc25 [Nannochloropsis gaditana])

HSP 1 Score: 347.8 bits (891), Expect = 2.600e-92
Identity = 184/231 (79.65%), Postives = 203/231 (87.88%), Query Frame = 0 
Query:    1 MAATAEQLARSLTQDITETQARLDTWLESSKADLEGLETRHGKALAEMGAERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKERALPQELATAREREEELRQVLAGKRAALGSLTSRQGEYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMVEGLVGEVNKANDFATFVKKMRRAFKATIGSN 232
            MAATAEQLARS+ QDITETQARLD WLE+S+ADLEGLE RH KALAEM AERATLLARQAELK KT+EG RLS+Q QE L A+EAEIA LKEKE  LPQEL  AR RE+EL+++LA KRAAL  L+SRQG+YINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLD++NP RE+FFSVHIDE D+YRVEEC P LD  MV+GLV E+N+ANDFA FVKKMRRAFKATI SN
Sbjct:   16 MAATAEQLARSIAQDITETQARLDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATIKSN 246
The following BLAST results are available for this feature:
BLAST of NO04G04010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28675.12.600e-9279.65kinetochore protein spc25 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04010NO04G04010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04010.1NO04G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04010.1.cds1NO04G04010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04010.1 ID=NO04G04010.1|Name=NO04G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
ATGGCCGCCACCGCCGAGCAGCTCGCTCGGTCACTCACCCAAGACATAAC
TGAGACTCAAGCACGCTTGGACACATGGCTCGAGAGCTCCAAAGCTGACC
TCGAAGGGCTTGAGACACGACACGGAAAAGCCCTAGCAGAGATGGGTGCC
GAACGTGCCACATTGCTGGCGCGGCAGGCCGAGCTCAAGAACAAGACGGA
GGAAGGGGCACGCCTTTCCCAACAGGACCAAGAAGCGTTATCAGCCGTAG
AAGCGGAAATCGCCGCACTGAAAGAGAAAGAAAGAGCATTACCCCAGGAA
CTGGCCACGGCGCGCGAGAGGGAAGAAGAGCTGCGACAGGTGCTGGCGGG
GAAAAGGGCAGCGCTGGGTTCCTTGACTTCGCGTCAGGGGGAATATATCA
ATGATTTGACCAGGGGGGTGGTGATGTACAAGCACCTTGGGTTGGATTTT
GAAAGGGCCGACGATAACAAGCTCAGGCTCATCTTTACACAGCTTGACTC
GAGTAACCCAGGGAGAGAATTTTTCTTCTCGGTACACATTGATGAGAACG
ACCAATATCGGGTAGAGGAGTGTGTGCCGGCGTTGGACGTGGGGATGGTA
GAGGGCTTGGTGGGGGAGGTTAATAAGGCGAATGATTTTGCAACGTTTGT
AAAAAAAATGCGAAGGGCGTTTAAGGCCACGATTGGATCGAATTGA
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protein sequence of NO04G04010.1

>NO04G04010.1-protein ID=NO04G04010.1-protein|Name=NO04G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MAATAEQLARSLTQDITETQARLDTWLESSKADLEGLETRHGKALAEMGA
ERATLLARQAELKNKTEEGARLSQQDQEALSAVEAEIAALKEKERALPQE
LATAREREEELRQVLAGKRAALGSLTSRQGEYINDLTRGVVMYKHLGLDF
ERADDNKLRLIFTQLDSSNPGREFFFSVHIDENDQYRVEECVPALDVGMV
EGLVGEVNKANDFATFVKKMRRAFKATIGSN*
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mRNA from alignment at chr4:1076401..1077096+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04010.1 ID=NO04G04010.1|Name=NO04G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=696bp|location=Sequence derived from alignment at chr4:1076401..1077096+ (Nannochloropsis oceanica)
ATGGCCGCCACCGCCGAGCAGCTCGCTCGGTCACTCACCCAAGACATAAC
TGAGACTCAAGCACGCTTGGACACATGGCTCGAGAGCTCCAAAGCTGACC
TCGAAGGGCTTGAGACACGACACGGAAAAGCCCTAGCAGAGATGGGTGCC
GAACGTGCCACATTGCTGGCGCGGCAGGCCGAGCTCAAGAACAAGACGGA
GGAAGGGGCACGCCTTTCCCAACAGGACCAAGAAGCGTTATCAGCCGTAG
AAGCGGAAATCGCCGCACTGAAAGAGAAAGAAAGAGCATTACCCCAGGAA
CTGGCCACGGCGCGCGAGAGGGAAGAAGAGCTGCGACAGGTGCTGGCGGG
GAAAAGGGCAGCGCTGGGTTCCTTGACTTCGCGTCAGGGGGAATATATCA
ATGATTTGACCAGGGGGGTGGTGATGTACAAGCACCTTGGGTTGGATTTT
GAAAGGGCCGACGATAACAAGCTCAGGCTCATCTTTACACAGCTTGACTC
GAGTAACCCAGGGAGAGAATTTTTCTTCTCGGTACACATTGATGAGAACG
ACCAATATCGGGTAGAGGAGTGTGTGCCGGCGTTGGACGTGGGGATGGTA
GAGGGCTTGGTGGGGGAGGTTAATAAGGCGAATGATTTTGCAACGTTTGT
AAAAAAAATGCGAAGGGCGTTTAAGGCCACGATTGGATCGAATTGA
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Coding sequence (CDS) from alignment at chr4:1076401..1077096+

>NO04G04010.1 ID=NO04G04010.1|Name=NO04G04010.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr4:1076401..1077096+ (Nannochloropsis oceanica)
ATGGCCGCCACCGCCGAGCAGCTCGCTCGGTCACTCACCCAAGACATAAC
TGAGACTCAAGCACGCTTGGACACATGGCTCGAGAGCTCCAAAGCTGACC
TCGAAGGGCTTGAGACACGACACGGAAAAGCCCTAGCAGAGATGGGTGCC
GAACGTGCCACATTGCTGGCGCGGCAGGCCGAGCTCAAGAACAAGACGGA
GGAAGGGGCACGCCTTTCCCAACAGGACCAAGAAGCGTTATCAGCCGTAG
AAGCGGAAATCGCCGCACTGAAAGAGAAAGAAAGAGCATTACCCCAGGAA
CTGGCCACGGCGCGCGAGAGGGAAGAAGAGCTGCGACAGGTGCTGGCGGG
GAAAAGGGCAGCGCTGGGTTCCTTGACTTCGCGTCAGGGGGAATATATCA
ATGATTTGACCAGGGGGGTGGTGATGTACAAGCACCTTGGGTTGGATTTT
GAAAGGGCCGACGATAACAAGCTCAGGCTCATCTTTACACAGCTTGACTC
GAGTAACCCAGGGAGAGAATTTTTCTTCTCGGTACACATTGATGAGAACG
ACCAATATCGGGTAGAGGAGTGTGTGCCGGCGTTGGACGTGGGGATGGTA
GAGGGCTTGGTGGGGGAGGTTAATAAGGCGAATGATTTTGCAACGTTTGT
AAAAAAAATGCGAAGGGCGTTTAAGGCCACGATTGGATCGAATTGA
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Synonyms
Publications