NO04G04000, NO04G04000 (gene) Nannochloropsis oceanica

Overview
NameNO04G04000
Unique NameNO04G04000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length384
Alignment locationchr4:1075107..1075490 +

Link to JBrowse

Properties
Property NameValue
DescriptionPrefoldin
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1075107..1075490 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000237GRIP
Homology
[Close]
BLAST of NO04G04000 vs. NCBI_GenBank
Match: EWM28735.1 (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 156.4 bits (394), Expect = 6.000e-35
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 0 
Query:    1 MQEEMSEMNATQAKLQEQERVLKVALRTAEESLARERELHAGPVNVEYLKHAIYGFLTAHNDKERLTLLSVIVTMLHFSPEEASKARAATQGGEGVVGGVKGWISSK 108
            MQEE++E+NA QA+LQEQER LK AL+ AE+SLARERELHAGPVN EYLKHAIYGFLTAH D ER TLLSVIVTMLHFSPEEA+KA+AATQ   G+  GV GWI++K
Sbjct:  968 MQEEITELNAKQARLQEQERGLKAALQKAEDSLARERELHAGPVNAEYLKHAIYGFLTAHTDTERQTLLSVIVTMLHFSPEEAAKAKAATQAKGGLRAGVTGWITAK 1074
The following BLAST results are available for this feature:
BLAST of NO04G04000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28735.16.000e-3576.64Prefoldin [Nannochloropsis gaditana][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04000.1NO04G04000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04000.1NO04G04000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04000 ID=NO04G04000|Name=NO04G04000|organism=Nannochloropsis oceanica|type=gene|length=384bp
ATGCAGGAGGAGATGTCGGAAATGAATGCGACACAGGCAAAACTACAAGA
GCAGGAGCGGGTGCTTAAGGTTGCTTTGAGGACAGCAGAGGAGAGTTTGG
CGAGAGAAAGGGAGTTGCATGCGGGGCCGGTGAATGTAGAATATCTGAAG
CATGCTATATACGGTTTTCTGACCGCGCATAACGACAAGGAGCGCTTAAC
GTTGCTTTCTGTGATTGTAACCATGTTGCATTTTAGCCCTGAGGAGGCGA
GCAAGGCGAGGGCGGCGACGCAGGGAGGTGAGGGCGTGGTGGGAGGGGTG
AAGGGATGGATAAGCTCGAAGCTTGGTGGTGGGGGCGGGGGTGGGGGAGG
AGGGGGGATGGTGAGGGATGGGGGGCCTGTGTGA
back to top

protein sequence of NO04G04000.1

>NO04G04000.1-protein ID=NO04G04000.1-protein|Name=NO04G04000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MQEEMSEMNATQAKLQEQERVLKVALRTAEESLARERELHAGPVNVEYLK
HAIYGFLTAHNDKERLTLLSVIVTMLHFSPEEASKARAATQGGEGVVGGV
KGWISSKLGGGGGGGGGGGMVRDGGPV*
back to top
Synonyms
Publications