NO04G03840, NO04G03840 (gene) Nannochloropsis oceanica

Overview
NameNO04G03840
Unique NameNO04G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2655
Alignment locationchr4:1034643..1037297 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1034643..1037297 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036116FN3_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G03840 vs. NCBI_GenBank
Match: EWM28829.1 (hypothetical protein Naga_100002g118 [Nannochloropsis gaditana])

HSP 1 Score: 1146.7 bits (2965), Expect = 0.000e+0
Identity = 574/881 (65.15%), Postives = 668/881 (75.82%), Query Frame = 0
Query:    1 MSVVPLAGGRPQTSHVDQDGMKYFSAVLGSSTEDMRVSLTMFSGSAELYVADRVDMAHLPLPGDRTSWKYTSKNNWQGRNQVVIPGPHANRTQFAIGVRGLEDASAFSVLASFSQSPVFLQEGVPVQQSLSPGRMAWFVYRIAKAEDVRVAVTALSGDPDVLASTTHSRPACVR---SQEGTDEEGVASFACGNYTWIAQTYQNDELVILHDLPCAEVGNTNVNASACSPRMLAPGQLLYIGVFAYDDKEDTTFTLSLTTGGGHTNLLPGHPQHGNTRLGVICQTRRADGTCGTSSV------SKAEVAYYRFLVPPPSALFGEDEAAHVSVILEPVCNATTFTWKGMEARCAIGCACDPLELYIWSCAESECDPEDEYPHPGHYQMKQTAAQSYSTVFLAHDKYNPNNGFCNPKTAGQSCLYFISVYHAE---VEDGRQGGSFTITASTNKDVTILPTRRNPASPDGLVSSSLDTVDASAGEVKGSKRYQMYTTKGGDVQLTLEACAGEMSLAVCDGSCRALYPTQGDYRFFADTTQICTREGCRPIPGGRGLPRIALDHVMEDSFFLTVNGTGKYMLKVATTTEGHAIAPVLAPPSSGSSAPLVKHIDYNRVTLSWPAATLKVPGKKRGRGEGEGVVPQGVKYKVFAFPEPILWDDNGREGGVERNPAEKPVLHTVCGVEHYAAVSQAGGEGEEGNERGGGMKTYVGEVPAGATSHTVTDLVPGTEYRFVVLASCDAVCLRASSLMPEGNFLPCGGPEPCQNQHCLYAMTRATAGGGGWIGG-GEGKLRV-SALLVVLAVLTMVGLMAQMAKRRTAGAEVGRREXXXXXXGGLMVRRPQQVDYEMTISPTGTASVTRGANALASPREMREGGRGGERYE 868
            MS+VPLAGGRPQ  HVD+D M+YFSAVLGSSTE +RVSLT+FSG AE++VADRVD + LPLP D TSW+Y+S++N +GRN+VVIPGPH NRT+FAIGVRGLEDAS FS+LASFSQS +FLQEGVPVQQSL+PGRMAWFV+R+A+ EDVRVAVTALSGDPD+LAST H RPACVR   S EG  E G AS+ CGNYTW+AQTYQ+DELVILHDLPC EVGNT VN SAC+P ML+PG  LY+GVFAYD+  DTTFTL+LTTG GHT LLPG PQHGNTRLG IC+ RRADG+C TS+       SKA VAYYRFLV PPSALFGEDEAAHVSV+LEPVCNATTFTW+G+E  C +GC CDPLELY+WSCAES+C  EDEYPHP HYQ +  AAQ+Y+TVFLAHDKYNPNNGFCNP+TAG+ CLYFI+VYH E   V    +GG FTITASTN DVTILPTRR+P  PDGLVSS+L+ VD + G   GSKRYQMY  +GGDVQL LE C G MSLAVCDGSC  LYPT+ DYR+ AD+TQ CTREGCRP+PG + +PRI +  V EDS F+ VNGTG Y L+VA TTEGHAIAPVLA P++GS AP +KH+  + VT++WPAATL VPGKK GRG G G+   GV+YKVFAFPE +L     +      +PAE PVLHTVCGVE YA    A G+  E    G    +YVG+V  G T+HTVT L PGTEY F+V+ SCD  CLRA+S    G  LPCGG  PCQ+Q  LY  TRAT   G W+GG G G   +   +L+V+ +L +VG + +       G   G         G   V RPQQVDYEMT+SPTG+ +  +  N  ASPR+ R  GRG  RYE
Sbjct: 1490 MSIVPLAGGRPQVGHVDRDNMQYFSAVLGSSTEGLRVSLTLFSGHAEIFVADRVDPSRLPLPEDPTSWRYSSRSNSRGRNEVVIPGPHRNRTRFAIGVRGLEDASTFSILASFSQSLIFLQEGVPVQQSLAPGRMAWFVHRLARKEDVRVAVTALSGDPDILASTLHPRPACVRPPGSSEG--ETGTASYVCGNYTWMAQTYQSDELVILHDLPCEEVGNTRVNTSACAPYMLSPGHSLYVGVFAYDNTADTTFTLTLTTGSGHTKLLPGRPQHGNTRLGAICKRRRADGSCDTSTAEPPADSSKAYVAYYRFLVSPPSALFGEDEAAHVSVVLEPVCNATTFTWEGLET-CRVGCPCDPLELYVWSCAESQCTSEDEYPHPDHYQTRHIAAQAYNTVFLAHDKYNPNNGFCNPQTAGEPCLYFITVYHPEGGGVSRAVEGGGFTITASTNHDVTILPTRRHPPPPDGLVSSNLEAVDITVGGRMGSKRYQMYAQQGGDVQLVLEPCTGSMSLAVCDGSCVGLYPTEHDYRYLADSTQTCTREGCRPLPGAQAMPRIDIKGVAEDSLFVAVNGTGVYSLRVAMTTEGHAIAPVLA-PATGSPAPSLKHVHRDSVTVTWPAATLTVPGKKSGRGGGRGMQAHGVRYKVFAFPEAVL-----QAFRQSASPAEAPVLHTVCGVERYA----ARGQTAETTGEGPLPTSYVGDVAEGMTTHTVTGLAPGTEYLFMVVGSCDQACLRANSKSAGGEILPCGGAVPCQDQRSLYPPTRATTASGAWVGGVGSGARELWRWVLLVIGILAIVGFLVRRKILHRGGGSGGVLGRNGLREGRSRVGRPQQVDYEMTVSPTGSCAAGQPRNEFASPRDGRGAGRG--RYE 2355          
BLAST of NO04G03840 vs. NCBI_GenBank
Match: CBJ29308.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 213.8 bits (543), Expect = 2.200e-51
Identity = 229/846 (27.07%), Postives = 356/846 (42.08%), Query Frame = 0
Query:    6 LAGGRPQTSHVDQDGMKYFSAVLGSSTEDMRVSLTMFSGSAELYVADR------VDMAHLPLPGDRTSWKYTSKNNWQGRNQVVIPGPHANRTQFAIGVRGLEDASAFSVLASFSQSPVFLQEGVPVQQSLSPGRMAWFVYRIAKAE-DVRVAVTALSGDPDVLA--STTHSRPACVRSQEGTDEEGVASFA--CGNYTWIAQTYQNDELVILHDLPC--------------AEVGNTNVN------------------ASACSPRMLAPGQLLYIGVFAYDDKEDTTFTLSLTTGGGHTNLLPGHPQHGNTRLGVIC--QTRRADGTCG----TSSVSKAEVAYYRFLVPPPSALFGEDEAAHVSVILEPVCNATTFTWKGMEARCAIGCACDPLELYIWSCAESECDPEDEYPHPGHYQMKQTAAQSYSTVFLAHDKYNPNNG-FCNPKTAGQSCLYFISVYHAEVEDGRQGGSFTITASTNKDVT-ILPTRRNPASPDGLVSSSLDTVDASAGEVKGSKRYQMYTTKGGDVQLTLEACAGEMSLAVCDGSCRALYPTQ--GD---YRFFADTTQICTRE----GCRPIPGG-----------RGLPRIALDHVMEDSFFLTVN-------GTGKYMLKV-ATTTEGHAIAPVLAP---PSSGSSAPLVKHIDYNRVTLSWPAATLKVPGKKRGRGEGEGVVPQ-GV--KYKVFAFPEPILWDDNGREGGVERNPAEKPVLHTVCGVEHYAAVSQAGGEGEEGNERGGGMKTYVGEV--PAGATSHTVTDLVPGTEYRFVVLASCDAVCLRASSLMPEGNFLPCGGPEPCQNQHCLYAMTRATA 765
            L  GRPQ   V  +GM+Y+     S T  + V+LT   G  +LYV  R       D A +  P DR ++++TS+   Q ++ +V+ G       + IGV G+ D + FSV+ +FSQ    LQEGVP + +L  G    F + + +   D+++ VT + GDP + A    T S  A   S E  D EG    A  C  +TW     +   + I H  PC               + GN  ++                  +  C+P     G ++++ V A     D +F++  +  G H  L+ G PQH  T   V C    +   G C     TSSV +  +  ++      +A  G       S+ L P C   +         CA GC   P ++Y+ SC E +C PED +P  G    +   + +  +VF+A  + +  +G FC P   G +C+Y+I+V  A  ED       T TA     ++ ++P   + + PDG++ +  + V  S     G K Y++ +    D Q+++E+C GE+ L VCD +C  LYP++  G+   Y + +D   ICT       C+P+PG             G P          ++F+ V           +++L+V     EG  I+P L+    PS   ++  V  +     T+ W  ATL +P K  GR   E      G+   Y+V+A P               R   E P  HT CG+E  +              +   +  +VG    P   T  T+  L     Y FVV A+CD VCL A   M     L      PC+ Q+ ++      A
Sbjct:  518 LVHGRPQAGKVAANGMRYYLLRPESDTTKLTVTLTKSIGEGDLYVVRRPAGGEGEDTAVID-PHDRATYRWTSRG--QAQDTIVLDGDGGTADPYLIGVSGVTDVT-FSVVGTFSQGVSILQEGVPQRHTLEAGSSMAFGFLVDQDNVDLQLTVTPIRGDPALYAGMGATPSCAAPEESGESGDAEGGGEDAGVCSGWTWSCTRGRRRNIPISHLHPCNVLEERQQGDSTEDGDGGNDAIDDADEVDNGEGVPTSGVEVSDKCAPSSFGVG-MMFMTVVAQGGM-DASFSVMASLVGKHVTLVTGVPQHAVTSPMVPCGEAKQTEQGPCSAEYETSSVMQEALFVFKVGAGSVAATTG------FSLSLVPECAPGSCG----GPTCASGCPRRPAKVYVKSCPEDKCLPEDRFPSQGSRDKEFEVSSADGSVFIADGRGSAGDGVFCVPSKHG-ACVYYIAV-TAGGED-EPAMQLTATADVPTGISLVVPCIGDSSLPDGMIVTPANRVPLS-----GMKLYELCSKGEVDFQVSVESCRGEVELFVCDDTCPGLYPSKKPGERMVYTYMSDGEMICTEHQQDTHCQPLPGSDRNKEASVTVEAGDPAEGTTSTRSSTYFVGVGMRPGQRAEDQEHLLRVNVMGEEGVPISPSLSAKFLPSGSDASRAV--VGGREATVEWGGATLHMP-KLSGRHPYEAEDRDCGIYCSYEVYAVP--------------TRLKGEFP--HTACGLESLS-----------NRLKVDVVYKFVGNAKNPGEVTQTTLQGLRDEVHYVFVV-ATCDFVCLEALLRMQCSRSLG-SAHSPCKPQNVVFPAAHLVA 1307          
The following BLAST results are available for this feature:
BLAST of NO04G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28829.10.000e+065.15hypothetical protein Naga_100002g118 [Nannochlorop... [more]
CBJ29308.12.200e-5127.07expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009411NSK009411Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03840.1NO04G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668855gene_2168Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g118gene1818Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03840.1NO04G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03840 ID=NO04G03840|Name=NO04G03840|organism=Nannochloropsis oceanica|type=gene|length=2655bp
ATGAGCGTCGTCCCGCTTGCGGGGGGGAGACCGCAGACAAGTCACGTCGA
CCAGGATGGTATGAAATATTTCTCGGCCGTCCTTGGGTCATCGACTGAGG
ACATGAGGGTCAGTCTGACAATGTTTTCGGGCAGCGCTGAGCTGTATGTT
GCTGATCGGGTGGACATGGCTCACCTACCCTTGCCTGGTGATAGGACCAG
CTGGAAGTACACATCCAAGAATAATTGGCAGGGAAGGAACCAGGTTGTCA
TCCCGGGGCCGCATGCGAATCGGACGCAATTTGCAATTGGCGTGCGTGGG
TTGGAGGACGCGTCGGCGTTCAGTGTGCTCGCTTCATTTTCCCAAAGCCC
TGTGTTCTTGCAGGAGGGCGTGCCGGTACAACAAAGTTTGTCGCCTGGGA
GAATGGCGTGGTTTGTGTACCGAATTGCGAAGGCTGAAGATGTGCGTGTG
GCAGTAACGGCGCTGTCGGGGGACCCTGATGTCTTGGCCAGCACCACTCA
TTCTCGGCCTGCGTGCGTGAGATCTCAGGAAGGGACGGATGAGGAGGGTG
TAGCGTCTTTTGCTTGCGGTAATTACACGTGGATTGCCCAGACGTATCAG
AACGATGAGTTGGTGATTCTACATGATTTACCTTGTGCGGAGGTAGGGAA
CACGAATGTGAATGCCAGCGCCTGCTCTCCGAGGATGCTGGCCCCGGGTC
AACTTCTTTATATTGGGGTGTTTGCTTATGACGACAAGGAGGATACAACA
TTTACACTCAGTCTCACCACTGGTGGGGGGCACACTAACCTTCTGCCTGG
CCACCCCCAGCATGGCAACACTCGGTTAGGCGTCATCTGTCAGACTCGAC
GGGCGGATGGGACATGTGGCACCTCGTCTGTGAGTAAGGCAGAGGTGGCA
TACTACCGATTTTTGGTGCCGCCGCCCTCGGCTTTGTTTGGGGAGGATGA
GGCTGCGCATGTGTCCGTCATCCTGGAGCCGGTCTGTAATGCTACCACAT
TTACTTGGAAGGGAATGGAGGCACGCTGTGCGATTGGCTGTGCTTGTGAC
CCTCTCGAACTCTATATCTGGTCATGTGCCGAGAGTGAGTGTGATCCTGA
AGATGAGTATCCACACCCAGGGCATTATCAGATGAAGCAGACGGCAGCAC
AGAGCTACAGCACGGTGTTTCTTGCGCACGATAAATATAATCCCAACAAT
GGATTTTGCAACCCCAAAACGGCCGGGCAGTCCTGTTTGTACTTCATCTC
GGTCTACCACGCTGAGGTTGAGGATGGGAGGCAGGGAGGGAGTTTCACCA
TCACTGCGAGCACGAATAAGGATGTGACTATTCTGCCGACCCGTCGGAAT
CCGGCCTCGCCTGATGGATTGGTATCTTCGAGCTTGGATACTGTGGATGC
CTCGGCGGGTGAGGTGAAAGGCAGCAAGCGTTATCAAATGTATACAACCA
AAGGAGGGGACGTACAGCTCACCCTAGAAGCATGCGCCGGTGAGATGAGC
CTGGCCGTGTGTGATGGCTCGTGTCGCGCTCTTTATCCTACTCAGGGGGA
CTATCGTTTCTTTGCAGATACCACACAGATATGTACGAGGGAGGGATGTC
GTCCCATCCCAGGAGGGAGGGGGCTGCCTCGCATTGCCCTGGACCATGTC
ATGGAGGATTCGTTTTTCCTGACTGTCAACGGTACGGGAAAATACATGTT
GAAAGTCGCAACTACAACAGAGGGGCACGCTATCGCGCCCGTCCTTGCTC
CTCCTTCCTCCGGCTCTTCCGCCCCGCTCGTGAAGCACATTGATTATAAT
CGTGTCACCTTGAGTTGGCCGGCTGCTACATTAAAAGTACCGGGAAAGAA
GCGAGGGAGGGGAGAAGGTGAAGGAGTAGTGCCACAGGGAGTGAAATATA
AAGTGTTTGCCTTCCCCGAGCCGATCTTGTGGGACGATAATGGTAGGGAG
GGAGGGGTCGAAAGAAATCCGGCGGAGAAGCCTGTCTTACATACAGTGTG
TGGCGTTGAGCATTATGCGGCTGTGAGCCAAGCAGGGGGGGAGGGCGAGG
AGGGGAATGAGAGAGGAGGGGGAATGAAGACGTATGTTGGAGAAGTGCCT
GCAGGAGCGACGAGTCATACAGTGACTGATTTGGTACCTGGGACCGAATA
CCGGTTCGTGGTGTTGGCGTCGTGTGATGCGGTGTGTTTAAGGGCGAGTA
GTCTGATGCCGGAAGGAAATTTTCTCCCGTGTGGTGGTCCGGAGCCTTGT
CAAAATCAGCATTGCCTATATGCAATGACCAGGGCGACAGCGGGTGGAGG
GGGGTGGATTGGTGGAGGGGAAGGAAAATTGAGAGTGAGTGCACTGCTGG
TGGTGCTGGCTGTGCTGACTATGGTGGGGCTGATGGCCCAGATGGCGAAG
AGGAGGACGGCAGGTGCGGAGGTGGGGAGGAGGGAGGGAGGGAGGGAGGG
AGGAGGAGGGCTGATGGTGAGGCGGCCGCAGCAGGTGGACTATGAAATGA
CGATCAGTCCGACGGGAACAGCGAGTGTGACACGTGGTGCGAACGCTTTG
GCATCCCCTCGCGAAATGAGAGAAGGAGGGAGGGGTGGAGAGCGATACGA
GCGGTTGTTGATAAGGGAGGGTGAGGAGGAGGAAGGGAGGCAGCAGTTGA
TGTAA
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protein sequence of NO04G03840.1

>NO04G03840.1-protein ID=NO04G03840.1-protein|Name=NO04G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=885bp
MSVVPLAGGRPQTSHVDQDGMKYFSAVLGSSTEDMRVSLTMFSGSAELYV
ADRVDMAHLPLPGDRTSWKYTSKNNWQGRNQVVIPGPHANRTQFAIGVRG
LEDASAFSVLASFSQSPVFLQEGVPVQQSLSPGRMAWFVYRIAKAEDVRV
AVTALSGDPDVLASTTHSRPACVRSQEGTDEEGVASFACGNYTWIAQTYQ
NDELVILHDLPCAEVGNTNVNASACSPRMLAPGQLLYIGVFAYDDKEDTT
FTLSLTTGGGHTNLLPGHPQHGNTRLGVICQTRRADGTCGTSSVSKAEVA
YYRFLVPPPSALFGEDEAAHVSVILEPVCNATTFTWKGMEARCAIGCACD
PLELYIWSCAESECDPEDEYPHPGHYQMKQTAAQSYSTVFLAHDKYNPNN
GFCNPKTAGQSCLYFISVYHAEVEDGRQGGSFTITASTNKDVTILPTRRN
PASPDGLVSSSLDTVDASAGEVKGSKRYQMYTTKGGDVQLTLEACAGEMS
LAVCDGSCRALYPTQGDYRFFADTTQICTREGCRPIPGGRGLPRIALDHV
MEDSFFLTVNGTGKYMLKVATTTEGHAIAPVLAPPSSGSSAPLVKHIDYN
RVTLSWPAATLKVPGKKRGRGEGEGVVPQGVKYKVFAFPEPILWDDNGRE
GGVERNPAEKPVLHTVCGVEHYAAVSQAGGEGEEGNERGGGMKTYVGEVP
AGATSHTVTDLVPGTEYRFVVLASCDAVCLRASSLMPEGNFLPCGGPEPC
QNQHCLYAMTRATAGGGGWIGGGEGKLRVSALLVVLAVLTMVGLMAQMAK
RRTAGAEVGRREGGREGGGGLMVRRPQQVDYEMTISPTGTASVTRGANAL
ASPREMREGGRGGERYERLLIREGEEEEGRQQLM*
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Synonyms
Publications