NO04G03640, NO04G03640 (gene) Nannochloropsis oceanica

Overview
NameNO04G03640
Unique NameNO04G03640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length447
Alignment locationchr4:988289..988735 -

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Properties
Property NameValue
DescriptionElongation factor Ts, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:988289..988735 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003746translation elongation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: INTERPRO
TermDefinition
IPR036402EF-Ts_dimer_sf
IPR009060UBA-like
IPR001816Transl_elong_EFTs/EF1B
IPR014039Transl_elong_EFTs/EF1B_dimer
Homology
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_087298463.1 (MULTISPECIES: elongation factor Ts [Erysipelatoclostridium] >OUP79082.1 translation elongation factor Ts [Erysipelatoclostridium sp. An173] >OUQ09294.1 translation elongation factor Ts [Erysipelatoclostridium sp. An15])

HSP 1 Score: 102.8 bits (255), Expect = 9.200e-19
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKN-NRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPP 137
            +LVKELR+ +GA + DCKKALEA   +GD+ K+F+WLR+KG A   K  +R A EGL    VEG    IVEVNSETDFVA+NA+FQA +  +A A++   P
Sbjct:    6 SLVKELREKTGAGMMDCKKALEA--CDGDIEKSFDWLREKGIAKAAKKADRIAAEGLTAFVVEGDVAAIVEVNSETDFVAKNAEFQALVNTIAKAVVDNQP 104
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BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_018391197.1 (elongation factor Ts [Ancylobacter sp. FA202])

HSP 1 Score: 102.4 bits (254), Expect = 1.200e-18
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 0 
Query:   32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKN-NRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            A     +VKELR+ +GA + DCK AL    V+GD+  A +WLRKKG A   K   R A EGL+G+AV G+ GV+VEVNSETDFVARN  FQ  ++D+AT  L
Sbjct:    2 ANITAGMVKELREKTGAGMMDCKAALTE--VDGDIEAAIDWLRKKGLAKAAKKAGRVAAEGLIGLAVSGTTGVVVEVNSETDFVARNEQFQQLVRDIATVAL 101
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_020185295.1 (elongation factor Ts [Methylopila sp. 73B])

HSP 1 Score: 102.4 bits (254), Expect = 1.200e-18
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0 
Query:   32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKN-NRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            A    A+VKELR+ +GA + DCK AL    VEGD+  AF+WLRKKG A   K   R A EGLV +AV+GS GV VEVN+ETDFVARN +FQ  +  +AT  L
Sbjct:    2 ANITAAMVKELREKTGAGMMDCKNALSE--VEGDIEAAFDWLRKKGLAKAAKKAGRVAAEGLVALAVDGSKGVAVEVNAETDFVARNVEFQEMVSTVATVAL 101
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_033922557.1 (elongation factor Ts [Sphingomonas sp. 37zxx])

HSP 1 Score: 102.4 bits (254), Expect = 1.200e-18
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0 
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVM-KNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHM 135
            A VKELR+ SGA + DCKKAL   G  GD+  A +WLR KG A    K++R A EGLVGIAV G+ G ++EVNSETDFVA+N  FQAF++D+    L +
Sbjct:    7 AAVKELRERSGAGMMDCKKALSENG--GDMEAAVDWLRTKGLAAAQKKSSRTAAEGLVGIAVAGTKGAVIEVNSETDFVAKNDQFQAFVRDVTQIALEI 103
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_088561419.1 (elongation factor Ts [Arboriscoccus pini] >SNB68017.1 translation elongation factor Ts (EF-Ts) [Arboriscoccus pini])

HSP 1 Score: 102.4 bits (254), Expect = 1.200e-18
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0 
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKN-NRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            ALVK+LR+ SGA + DCKKALE  G  GD+  A +WLRKKG A   K   R A EGL+G+A+EG  GV+VEVNSETDFVARN  FQ+ ++++    L
Sbjct:    7 ALVKQLREQSGAGMMDCKKALEENG--GDIEAATDWLRKKGLAAAAKKAGRVAAEGLIGLALEGPKGVLVEVNSETDFVARNETFQSLVREVTALAL 101
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_066963466.1 (MULTISPECIES: elongation factor Ts [Sphingomonadaceae] >ATE65285.1 elongation factor Ts [Rhizorhabdus dicambivorans] >PCE42389.1 elongation factor Ts [Rhizorhabdus dicambivorans])

HSP 1 Score: 102.1 bits (253), Expect = 1.600e-18
Identity = 57/109 (52.29%), Postives = 72/109 (66.06%), Query Frame = 0 
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQAT-VMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPPPWANMASS 145
            A VKELR+ SGA + DCKKAL   G  GD+  A +WLR KG AT   K++R A EGLVG+AV+G+ G  VEVNSETDFVA+N  FQ F++ + T  L      A +A +
Sbjct:    7 AAVKELREKSGAGMMDCKKALTENG--GDMEAAIDWLRTKGLATAAKKSSRTAAEGLVGVAVQGTRGAAVEVNSETDFVAKNEQFQEFVRSVTTLALTAGDDVAKLAEA 113
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_021225275.1 (elongation factor Ts [Sphingobium lactosutens] >EQB16610.1 elongation factor Ts [Sphingobium lactosutens DS20])

HSP 1 Score: 101.7 bits (252), Expect = 2.100e-18
Identity = 60/110 (54.55%), Postives = 71/110 (64.55%), Query Frame = 0 
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVM-KNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPPPWANMASSA 146
            A VKELRD SGA + DCKKAL      GDL  A +WLR KG A    K++R A EGLVG+AV G+ GV VEVNSETDFVA+N  FQ F++ +AT  L      A   S+A
Sbjct:    7 AAVKELRDRSGAGMMDCKKALTE--ANGDLEAATDWLRAKGLAAAQKKSSRTAAEGLVGVAVAGTKGVAVEVNSETDFVAKNDQFQDFVRTVATVALETGAADAEALSNA 114
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_033075384.1 (elongation factor Ts [Sphingopyxis sp. MWB1])

HSP 1 Score: 101.7 bits (252), Expect = 2.100e-18
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 0 
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKN-NRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            ALVKELR+ SGA + DCKKAL   G  GD+  + +WLR KG A   K   R A EGLVG+A +G+ G +VEVNSETDFVA+N  FQAF+ D+A   L
Sbjct:    7 ALVKELRERSGAGMMDCKKALAENG--GDIEASIDWLRTKGLAAAAKKAGRVAAEGLVGVATDGTRGAMVEVNSETDFVAKNEQFQAFVSDVAKVAL 101
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: PDH62641.1 (elongation factor Ts [SAR116 cluster bacterium MED-G04])

HSP 1 Score: 101.7 bits (252), Expect = 2.100e-18
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 0 
Query:   33 TAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG-QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDL 128
            T   +LVKELR+++GA + DCKKAL   G  GDL  A +WLRKKG  A   K +R A+EGLVG+   G+ G ++EVNSETDFV+RN DFQ F+++L
Sbjct:    2 TITASLVKELRESTGAGMMDCKKALNETG--GDLDAAIDWLRKKGLSAAAKKASRVASEGLVGVMGSGTTGALIEVNSETDFVSRNEDFQQFVREL 95
[Close]
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_103121823.1 (elongation factor Ts [Methylopila sp. Yamaguchi] >GBD49382.1 translation elongation factor Ts [Methylopila sp. Yamaguchi])

HSP 1 Score: 101.7 bits (252), Expect = 2.100e-18
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 0 
Query:   32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKN-NRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            A    A+VKELR+ +GA + DCK AL    VEGD+  AF+WLRKKG A   K   R A EGLV +AV+G+ GV VEVN+ETDFVARN +FQ  +  +AT  L
Sbjct:    2 ANITAAMVKELREKTGAGMMDCKNALSE--VEGDIEAAFDWLRKKGLAKAAKKAGRVAAEGLVALAVDGAKGVAVEVNAETDFVARNVEFQEMVSTIATVAL 101
The following BLAST results are available for this feature:
BLAST of NO04G03640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_087298463.19.200e-1954.46MULTISPECIES: elongation factor Ts [Erysipelatoclo... [more]
WP_018391197.11.200e-1853.92elongation factor Ts [Ancylobacter sp. FA202][more]
WP_020185295.11.200e-1855.88elongation factor Ts [Methylopila sp. 73B][more]
WP_033922557.11.200e-1855.56elongation factor Ts [Sphingomonas sp. 37zxx][more]
WP_088561419.11.200e-1856.70elongation factor Ts [Arboriscoccus pini] >SNB6801... [more]
WP_066963466.11.600e-1852.29MULTISPECIES: elongation factor Ts [Sphingomonadac... [more]
WP_021225275.12.100e-1854.55elongation factor Ts [Sphingobium lactosutens] >EQ... [more]
WP_033075384.12.100e-1856.70elongation factor Ts [Sphingopyxis sp. MWB1][more]
PDH62641.12.100e-1855.21elongation factor Ts [SAR116 cluster bacterium MED... [more]
WP_103121823.12.100e-1854.90elongation factor Ts [Methylopila sp. Yamaguchi] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03640.1NO04G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03640.1NO04G03640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03640 ID=NO04G03640|Name=NO04G03640|organism=Nannochloropsis oceanica|type=gene|length=447bp
ATGATGCTATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGC
ATCCTTCTTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGG
CCCCTTTGGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATC
ACGGACTGCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGC
CAAGGCATTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGA
ACAATCGGGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCC
GCGGGAGTGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAA
CGCCGACTTCCAAGCCTTCATCAAAGATCTCGCCACCGCCATTCTTCACA
TGCCCCCCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGA
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protein sequence of NO04G03640.1

>NO04G03640.1-protein ID=NO04G03640.1-protein|Name=NO04G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MMLWRSAAASTTIRTRASFFLLGSWEVNRAFATAPLALVKELRDASGAPI
TDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGS
AGVIVEVNSETDFVARNADFQAFIKDLATAILHMPPPWANMASSATAF*
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Synonyms
Publications