NO04G03610, NO04G03610 (gene) Nannochloropsis oceanica

Overview
NameNO04G03610
Unique NameNO04G03610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1298
Alignment locationchr4:982450..983747 -

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Properties
Property NameValue
DescriptionMapeg family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:982450..983747 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023352MAPEG-like_dom
IPR001129Membr-assoc_MAPEG
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G03610 vs. NCBI_GenBank
Match: EWM28676.1 (mapeg family protein [Nannochloropsis gaditana])

HSP 1 Score: 255.8 bits (652), Expect = 1.000e-64
Identity = 124/175 (70.86%), Postives = 142/175 (81.14%), Query Frame = 0
Query:    1 MATLTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCIKIAVALINGGN 176
            M+T T++ EYGYVLI A +LVLEG +LG  VMGLR+ YF++E+QKKN DLMDEHKKAFPTVPFS GYPDMGSGRY  RL YEQWF FNN QRGH NFLE VW  M+LLLVGG F+PK FA L   YIV+RALYA GY+S GPKGRE GA++G+LSLLGMVG  IK+ VALI  G+
Sbjct:    1 MSTFTISPEYGYVLIAAALLVLEGVYLGSAVMGLRRAYFNDEWQKKNNDLMDEHKKAFPTVPFSLGYPDMGSGRYAGRLDYEQWFRFNNVQRGHHNFLEQVWGVMSLLLVGGLFQPKTFAVLATIYIVSRALYAKGYSSQGPKGREAGAILGILSLLGMVGCVIKVGVALIKSGS 175          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: CDW75969.1 (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 114.4 bits (285), Expect = 3.600e-22
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 0
Query:    6 VASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAFPTVPFS-SGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCIKIAVALIN 173
            V+ EY +V +VA ++       G +  G RK  F+ E   + Q   DEH+K FP    +  GYPDMG+GRY+ +LSY+ W+ FNNAQR H N+LE     +  LL+ G          G+A+++ R +YA GYA+ GP+GR +G ++ LL+ L +  + I  ++ L N
Sbjct:    5 VSDEYRWVALVASLIGFHLTITGFVAGGKRKATFTPEIISQVQ---DEHEKFFPGTQINKEGYPDMGNGRYSQKLSYKDWYNFNNAQRAHYNYLECATVVITWLLIAGVKYEWYAVGFGSAFLLGRLMYAFGYAAKGPQGRVIGFLISLLASLALCVLAILSSLRLAN 169          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: EJY84401.1 (MAPEG family protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 114.0 bits (284), Expect = 4.700e-22
Identity = 66/169 (39.05%), Postives = 97/169 (57.40%), Query Frame = 0
Query:    1 MATLTVASEYGYVLIVAGV----LVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAFPTVPFS-SGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCI 165
            M+ L +  +Y YV ++A +    L + GF+ G    G RK++F+ EF K N    +EH+K FP    S   YPDMG+GRY+ +L Y+ W+ FNNAQR H N+LES    +  LL+ G     +    G+ Y++AR +YA GYA+ GP GR +G  +   S L ++   I
Sbjct:    1 MSGLVLTDDYRYVALIASLIGFQLTVTGFWAG----GQRKKHFTPEFLKDN--FQEEHEKHFPGTQVSKEAYPDMGNGRYSQKLPYKSWYEFNNAQRVHYNYLESATIVITWLLIAGLRYEWVAVGAGSVYLLARLIYAIGYAAKGPAGRVIGFALAFFSSLVLMVFAI 163          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: KRX05346.1 (hypothetical protein PPERSA_00647 [Pseudocohnilembus persalinus])

HSP 1 Score: 110.9 bits (276), Expect = 4.000e-21
Identity = 72/171 (42.11%), Postives = 98/171 (57.31%), Query Frame = 0
Query:    4 LTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAF---PTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCIKIAVALI 172
            + V + Y YVLI A  L LE    G I M  R++ F+ EF +KN +  + HKK       +P S GYPDMG+G Y+ +LSY+ W+ FNN QR HQNF +S+   +  LL+ G   P   A LGA + V R LYA GY S GP  RE+GA +   S   ++G  +  A+ L+
Sbjct:    3 IAVPATYPYVLIAATALGLECHLTGFIGMKTRQRVFNKEFMEKNFE--EIHKKEIGQDEKIP-SLGYPDMGNGFYSQKLSYKDWYDFNNTQRIHQNFTDSIGYLIPSLLIAGLQFPLFSAGLGATHFVGRMLYAKGY-SQGPNKREIGAGLSHGSTFAILGTSLFSAIRLL 169          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: KXN74461.1 (hypothetical protein CONCODRAFT_82924 [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 108.2 bits (269), Expect = 2.600e-20
Identity = 67/168 (39.88%), Postives = 90/168 (53.57%), Query Frame = 0
Query:    3 TLTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCIKIAVAL 171
            ++T+A +YGYVL+ +  + ++ F     V  LRK                        VP    YPD GSGRY  +L+ E+W LFNNAQR H N++E    T  LLL  G F P   A    AYIV R LY +GY  +GPKGR VGA+V  L+L+ ++GM +  A+ L
Sbjct:    2 SITIAKDYGYVLLGSTAIAIQCFLSALPVSKLRKSL---------------------NVP----YPDTGSGRYAKKLTDEEWELFNNAQRAHHNYVEQHTITQVLLLTAGVFNPIYAAYSSVAYIVGRQLYQNGYIKNGPKGRMVGAIVLDLALVALIGMSVHGALKL 144          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: KRX05344.1 (hypothetical protein PPERSA_00645 [Pseudocohnilembus persalinus])

HSP 1 Score: 104.8 bits (260), Expect = 2.900e-19
Identity = 62/170 (36.47%), Postives = 95/170 (55.88%), Query Frame = 0
Query:    4 LTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKN-QDLMDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCIKIAVALIN 173
            + +  +Y YV+I+A +L L    +G +    RK+ F+ +F  KN Q++ ++       +P   GYPDMGSG Y+ +LSY+ W+ FNN+QR HQNF + +   +  LL+ G   P     LG  + + R LYA GY S GP  RE+GA +   S   ++G  +   + LIN
Sbjct:    3 IQIPDQYPYVIIMASILGLHCHIIGFLGQKTRKRVFNKKFMVKNFQEIHEKEIGKNEKLP-GQGYPDMGSGFYSQKLSYKDWYDFNNSQRIHQNFADQIGYLLPALLIAGLLYPIFSVGLGLTHFIGRILYASGY-SKGPDQRELGAYLSHGSTFFILGTGLLCGIQLIN 170          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: ORX70957.1 (membrane-associated proteins in eicosanoid and glutathione metabolism [Linderina pennispora])

HSP 1 Score: 103.2 bits (256), Expect = 8.300e-19
Identity = 54/157 (34.39%), Postives = 86/157 (54.78%), Query Frame = 0
Query:    4 LTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMV 161
            + + + +GY ++ A  + ++ FF G  V+  RK+Y                         +  YPD G GRY+D+L  E W  FNN +R   N+ E +   +++L++ G ++PK+ AS GA+Y+V R LY+ GY S GPKGR  GA++  +S LG+V
Sbjct:    3 IVIGTNFGYCVMAAAAMCVQCFFEGTRVVAARKKY-------------------------NVQYPDNGGGRYSDKLKDEDWVAFNNVKRVSDNYSEQIGMVLSVLILAGLYQPKLAASFGASYVVGRFLYSMGYRSKGPKGRMAGALLMTMSFLGLV 134          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: OMJ21175.1 (Microsomal glutathione S-transferase 3 [Smittium culicis] >OMJ21435.1 Microsomal glutathione S-transferase 3 [Smittium culicis])

HSP 1 Score: 101.7 bits (252), Expect = 2.400e-18
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 0
Query:    4 LTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVG 162
            +TV +EY + L+ A V+ L+ F  G  V+G RK+Y                            YPDMGSGRY+ +LS ++W  FN+  R HQN++E +   +  +LV G F P   A  G  YIV R +Y+HGY ++GPKGR  GA++ +L+++  VG
Sbjct:    2 ITVGNEYAWNLLAATVMGLQCFAAGMSVVGARKKY-------------------------KVDYPDMGSGRYSAKLSDKEWVEFNSIMRVHQNYIEQLPLAILSVLVNGLFNPIQSAIAGDVYIVGRFIYSHGYKAYGPKGRMAGAMISMLAIVFNVG 134          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: ORY04808.1 (hypothetical protein K493DRAFT_311201 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 101.3 bits (251), Expect = 3.200e-18
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 0
Query:    3 TLTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDLMDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCI 165
            ++ +  +Y + +I A  +  +    GG V   RK+Y                      VP    YPDMG+GR + +L+ E+W  FNN QR HQN++E +    +L+L+GG + P++ A+LGA YI+ RA+Y  GY   GP+GR  G +   LSLLG+VG+ +
Sbjct:    2 SIVITPKYSWCVIAAVGMGFQLLLTGGAVAAARKKY---------------------NVP----YPDMGNGRLSTKLTDEEWTSFNNVQRTHQNYVEQISTAQSLVLLGGLYFPEVSATLGAIYILGRAIYTEGYKRVGPRGRIYGVIPIDLSLLGLVGVTL 138          
BLAST of NO04G03610 vs. NCBI_GenBank
Match: XP_004333244.1 (MAPEG family protein [Acanthamoeba castellanii str. Neff] >ELR11231.1 MAPEG family protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 100.5 bits (249), Expect = 5.400e-18
Identity = 63/163 (38.65%), Postives = 97/163 (59.51%), Query Frame = 0
Query:    3 TLTVASEYGYVLIVAGVLVLEGFFLGGIVMG-LRKQYFSNEFQKKNQDLMDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLESVWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAVVGLLSLLGMVGMCI 165
            +LT+  ++G+VL VA VL+    +  GI +G +R + F+  F K++   +D +K     VP  +GYPDMGSG Y  +L ++ W  FNNAQR H N+LE +   + + LV G F  +  A LG  YIV R +Y  GY S G +GR +G ++  L+LL ++ + +
Sbjct:   13 SLTLDPDFGWVL-VAAVLMAFQLWTEGIPVGRMRGKLFTRAFFKQHFPNLDPNK-----VP-ENGYPDMGSGLYASKLPHDDWVRFNNAQRVHYNYLEGIALVLVVELVAGLFFARYAALLGFVYIVGRLIYGLGYRSSGSRGRVLGVLLVDLTLLALLSLAL 168          
The following BLAST results are available for this feature:
BLAST of NO04G03610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28676.11.000e-6470.86mapeg family protein [Nannochloropsis gaditana][more]
CDW75969.13.600e-2238.10UNKNOWN [Stylonychia lemnae][more]
EJY84401.14.700e-2239.05MAPEG family protein (macronuclear) [Oxytricha tri... [more]
KRX05346.14.000e-2142.11hypothetical protein PPERSA_00647 [Pseudocohnilemb... [more]
KXN74461.12.600e-2039.88hypothetical protein CONCODRAFT_82924 [Conidiobolu... [more]
KRX05344.12.900e-1936.47hypothetical protein PPERSA_00645 [Pseudocohnilemb... [more]
ORX70957.18.300e-1934.39membrane-associated proteins in eicosanoid and glu... [more]
OMJ21175.12.400e-1837.34Microsomal glutathione S-transferase 3 [Smittium c... [more]
ORY04808.13.200e-1835.80hypothetical protein K493DRAFT_311201 [Basidiobolu... [more]
XP_004333244.15.400e-1838.65MAPEG family protein [Acanthamoeba castellanii str... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009509NSK009509Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03610.1NO04G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579235gene_2142Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g28gene1901Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03610.1NO04G03610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03610 ID=NO04G03610|Name=NO04G03610|organism=Nannochloropsis oceanica|type=gene|length=1298bp
TGCTTCAACAGTGTTCACTACGGCGCTGCTATTCGTCCTCCTCGTTGGAC
CCACCATTTTGGTGTTCACTTCCCACATTCACACCACCTACTTCATCTTC
CTGCATGATGTTTTTTTATTGAAGCATCTTTTTGTCTTGAGCGTGCCTGG
GGCGGTGCTGGTAGCTTGTACCGCTCCTATTTGACTTTCGCTTCGCTTTT
ACAGAACAACGCATCAAGCATTCCCTTAAAAGCGAACCCTGCATCCTACA
AACTCACGCTGAAGTACTTGATGAAAACATGCCACATCTATGGCAGGACA
TCCACATCCTGTTTGGGGGCGCAGCTGGTTATGACAGCCACGAAATCCCT
TTACGTATGCAATGGAAGCCTCCCTGACGTCTGCAATGAACCTCATCCCT
CGCTCCCTCCTCACATCTTCTTGTATACCGCATACCTACCCCTCTCTCCC
ACCCTCGTTGCAGCATCCCCCTGTCCCTCATAGACACAGAATTACACATC
AAAAAGTATGGCCACCCTGACAGTCGCCTCCGAATACGGCTACGTTCTAA
TCGTCGCCGGTGTCCTCGTCCTCGAAGGCTTCTTTCTCGGAGGCATTGTC
ATGGGGCTGCGCAAACAATATTTCAGTAACGAATTCCAGAAGAAGAACCA
GGACCTGATGGATGAGCATAAGAAGGCTTTCCCCACCGTGCCCTTCTCCA
GTGGCTATCCCGACATGGGTTCTGGTCGCTACACAGATCGCTTGAGTTAT
GAGCAGTGGTTCCTCTTTAACAACGCGCAGCGTGGACATCAAAACTTTTT
GGAATCCGTATGGGCCACGATGGCGCTGCTGTTGGTCGGCGGGTTCTTCG
AGCCTAAGATCTTCGCCAGTTTGGGGGCCGCGTATATTGTGGCGCGTGCA
CTCTATGCCCATGGCTATGCCTCGCACGGCCCTAAAGGACGGGAGGTAGG
AGCAGTGGTGGGATTGCTTTCGTTATTGGGAATGGTGGGCATGTGTATCA
AGATTGCTGTTGCCCTGATCAATGGAGGGAACTAAGGAAAGGGGGAGAAA
GAGATAAAGAGAAAGAGAGAGTGTGTGTGCGTAGGTTGAGAGAGTGTAAA
AAAGTTAAGCAGGAGGCGTAGCCTCTGCGAGTGTTGTGGAAAGACATAGC
AGAAGGACGGAGCAGAGAGAGGGTAAGAGAAAAGCATCAGCCTCAATACT
TAGTGTTTTCTGTTTCTCAAGGCGATGAGACAAGAAGACAGGAGAGTGAG
GGAGAGACGAAAATTCGACTGCTCACATCGACCACATAATATATGAAT
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protein sequence of NO04G03610.1

>NO04G03610.1-protein ID=NO04G03610.1-protein|Name=NO04G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MATLTVASEYGYVLIVAGVLVLEGFFLGGIVMGLRKQYFSNEFQKKNQDL
MDEHKKAFPTVPFSSGYPDMGSGRYTDRLSYEQWFLFNNAQRGHQNFLES
VWATMALLLVGGFFEPKIFASLGAAYIVARALYAHGYASHGPKGREVGAV
VGLLSLLGMVGMCIKIAVALINGGN*
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Synonyms
Publications