NO04G03550, NO04G03550 (gene) Nannochloropsis oceanica

Overview
NameNO04G03550
Unique NameNO04G03550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length994
Alignment locationchr4:966994..967987 +

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA/rRNA methyltransferase, SpoU
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:966994..967987 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
Homology
BLAST of NO04G03550 vs. NCBI_GenBank
Match: KXZ46246.1 (hypothetical protein GPECTOR_45g116 [Gonium pectorale])

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-14
Identity = 71/224 (31.70%), Postives = 105/224 (46.88%), Query Frame = 0
Query:    7 QQDNKKES-QGP------PHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAF--------SSWKA----------------LRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG-QPGRT 198
            ++DN  ES  GP      P  ++   V +K N GT VR + AFG   +CL  VG  +F+  GS GS  +++ R +        +SW                  + QH  + +  RV+G+  E    +L VH+ PF GPT F+   +G+ L+E+Q A C   V++P  G         P    L +   VA S+VLHHF  W+       +G KYV+  +P RT
Sbjct:    3 EEDNATESVAGPSGQEPVPCYIITHSVAKKHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFRHYENLQQCVQASWVPHTRTAPSPYGPVYLVFVPQHLKEAEGCRVLGI--EICSGALPVHEHPFTGPTAFLLGNEGQGLSEKQMALCDGFVYIPQHG---------PGTASLNVRVAVAASIVLHHFAIWAAYPEREREGYKYVVADKPLRT 213          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: ETI32354.1 (hypothetical protein F443_20820 [Phytophthora parasitica P1569])

HSP 1 Score: 85.9 bits (211), Expect = 2.000e-13
Identity = 69/215 (32.09%), Postives = 99/215 (46.05%), Query Frame = 0
Query:   21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEGGKG 231
            MV      + N GT +R + AFGTA + +  VG  RF  HG+  +  Y+    F  +   R++   +   + G+  + A ES + H  P+ G + FV   +   L+EEQRA C   VHVP  G        + +   LTL+  V  ++ LHHFTA++Q      EA   QG K+VL           E  Q   A R  +R  AD    +E G G
Sbjct:   15 MVLSNKSGRQNLGTYLRTASAFGTAQVLV--VGSERFGTHGAHRAQKYVDVVQFYDFAEARKYLKTKGCTIFGLSNQPA-ESFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSQLTLDTTVITAITLHHFTAFAQFPVCAIEATSTQG-KFVLDAYPTFDPAHNERGQEKAAMREAKRANADDGLSEENGLG 219          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_008898116.1 (hypothetical protein PPTG_06095 [Phytophthora parasitica INRA-310] >ETK72728.1 hypothetical protein L915_20233 [Phytophthora parasitica] >ETL26181.1 hypothetical protein L916_20101 [Phytophthora parasitica] >ETL79395.1 hypothetical protein L917_19969 [Phytophthora parasitica] >ETM32642.1 hypothetical protein L914_19996 [Phytophthora parasitica] >ETN17045.1 hypothetical protein PPTG_06095 [Phytophthora parasitica INRA-310] >ETO61086.1 hypothetical protein F444_20838 [Phytophthora parasitica P1976] >ETP02215.1 hypothetical protein F441_20682 [Phytophthora parasitica CJ01A1] >ETP30377.1 hypothetical protein F442_20616 [Phytophthora parasitica P10297])

HSP 1 Score: 85.9 bits (211), Expect = 2.000e-13
Identity = 69/215 (32.09%), Postives = 99/215 (46.05%), Query Frame = 0
Query:   21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEGGKG 231
            MV      + N GT +R + AFGTA + +  VG  RF  HG+  +  Y+    F  +   R++   +   + G+  + A ES + H  P+ G + FV   +   L+EEQRA C   VHVP  G        + +   LTL+  V  ++ LHHFTA++Q      EA   QG K+VL           E  Q   A R  +R  AD    +E G G
Sbjct:   15 MVLSNKSGRQNLGTYLRTASAFGTAQVLV--VGSERFGTHGAHRAQKYVDVVQFYDFAEARKYLKTKGCTIFGLSNQPA-ESFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSQLTLDTTVITAITLHHFTAFAQFPVRAIEATSTQG-KFVLDAYPTFDPAHNERGQEKAAMREAKRANADDGLSEENGLG 219          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: KUF91942.1 (hypothetical protein AM587_10017586 [Phytophthora nicotianae])

HSP 1 Score: 85.9 bits (211), Expect = 2.000e-13
Identity = 69/215 (32.09%), Postives = 99/215 (46.05%), Query Frame = 0
Query:   21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEGGKG 231
            MV      + N GT +R + AFGTA + +  VG  RF  HG+  +  Y+    F  +   R++   +   + G+  + A ES + H  P+ G + FV   +   L+EEQRA C   VHVP  G        + +   LTL+  V  ++ LHHFTA++Q      EA   QG K+VL           E  Q   A R  +R  AD    +E G G
Sbjct:    1 MVLSNKSGRQNLGTYLRTASAFGTAQVLV--VGSERFGTHGAHRAQKYVDVVQFYDFAEARKYLKTKGCTIFGLSNQPA-ESFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSQLTLDTTVITAITLHHFTAFAQFPVRAIEATSTQG-KFVLDAYPTFDPAHNERGQEKAAMREAKRANADDGLSEENGLG 205          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: PRW32518.1 (family tRNA rRNA methyltransferase [Chlorella sorokiniana])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 0
Query:   17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHA----DNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRTG 199
            P   +++     K N GT  RC+ AF    +CL  VG  +F+  G+ GS  ++    FS +  L +      +N+   V+GV +    +   VH  PF G   F+   +G  L E+Q A C S +++P  G            G  +L   VA S++LHHF  W+     + +GQK+V+ + P RTG
Sbjct:   19 PACYLISYNQQSKHNIGTLARCATAFNVKEVCL--VGSRQFNTFGAHGSSEFVE---FSHYHTLEECVADLKENKGCTVVGVEIMDGAQ--PVHSFPFKGNAAFMLGNEGAGLNEKQLALCDSFIYIPQYG-----------AGTASLNVAVAASIILHHFAHWAGYPERQREGQKFVVAERPQRTG 187          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_005846737.1 (hypothetical protein CHLNCDRAFT_17312, partial [Chlorella variabilis] >EFN54635.1 hypothetical protein CHLNCDRAFT_17312, partial [Chlorella variabilis])

HSP 1 Score: 85.1 bits (209), Expect = 3.500e-13
Identity = 64/203 (31.53%), Postives = 101/203 (49.75%), Query Frame = 0
Query:   21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSW-KALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRTGE--VDKEEQQRLQAERRQQRQVA 220
            ++   V +K N GT  RC+ AF    LCL  VG  +F+  G+ GS  Y+    +++  +  +   DN+   V+GV  E    +  VH+ PF G T F+   +G+ L E+Q A C S +++P  G            G  +L   VA S+VLHHF   +     + +G K+ LG+ P RT    V     + L AER+++++ A
Sbjct:    2 LITYNVSKKHNLGTLARCATAFNVRQLCL--VGSRQFNTFGAHGSSEYVDFCHYNTLDECCQDLKDNKGCTVVGV--EIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLALCDSFLYIPQYG-----------AGTASLNVAVAASIVLHHFALHAGYGERQREGYKFTLGERPQRTAPRGVVPLSGEELAAERQRRQRAA 189          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_024361104.1 (uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361105.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361106.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361108.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361109.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >PNR30388.1 hypothetical protein PHYPA_026704 [Physcomitrella patens])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 65/222 (29.28%), Postives = 104/222 (46.85%), Query Frame = 0
Query:    1 MEASPPQQDNKKESQGPP--HLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG-QPGRTG--------EVDKEEQQRLQAE 212
            +E S  +  N    +G P    ++   V ++ N GT  R + AFG + + L  VGR  F+  GS G+  +L  R F +  A  ++  ++   + GV  E    +  VHK PF G T FV   +G  L++++   C   V++P   GP          G  +L   VA S+VLH F  W++       GQK+V+  +P R G          +  E++RL++E
Sbjct:  169 VEESKTKSGNLPRKEGKPFESFLLVHNVAKRHNLGTLARSATAFGVSEIIL--VGRKDFNAFGSHGATLHLQFRHFQTLPAAVKYLKDKNVSICGV--EITEGAAGVHKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVYIP-QNGP----------GTASLNVTVAASIVLHQFAVWAEFPERERDGQKFVVADRPVRRGPRNMCPDDPAEVSERRRLKSE 375          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: OWZ09223.1 (RRNA methyltransferase 1, mitochondrial [Phytophthora megakarya])

HSP 1 Score: 82.0 bits (201), Expect = 2.900e-12
Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = 0
Query:   21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEG 228
            MV      + N GT +R + AFGT  + +  VG  RF  HG+  +  Y+    F  +   R++   +   V G+  ++AV S + H  P+ G + FV   +   L+EEQRA C   VHVP  G        + +   LTL+  V  ++ LHHFTA++Q      EA   QG+  +   P      +K  +++      ++    D LS+ +G
Sbjct:   13 MVLSNKSGRQNLGTYLRTASAFGTTQVLV--VGSERFGTHGAHRAQKYVDVVHFYDFAEAREYLKAKGCTVFGLA-KQAVGSFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSDLTLDTTVVTAITLHHFTAFAQFPVRAIEATSTQGKFVLDAYPTFDPTHNKRGEEKAAMREAKRANADDGLSEGDG 215          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_015939488.1 (uncharacterized protein LOC107465028 [Arachis duranensis] >XP_016196715.1 uncharacterized protein LOC107638025 [Arachis ipaensis])

HSP 1 Score: 80.5 bits (197), Expect = 8.600e-12
Identity = 53/173 (30.64%), Postives = 81/173 (46.82%), Query Frame = 0
Query:   21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ 194
            +V   + ++ N GT  R + AFG + L L  VGR  F+  GS GS  +L  R F S    RQ    + + + GV  E    ++ V++ PF   T F+   +G  L+ ++   C   V++P  G           GG  +L   VA S+VLHHF  W+        G K+V+ +
Sbjct:    7 VVVHNIAKRHNVGTLARSATAFGVSELIL--VGRRDFNSFGSHGSSAHLRFRHFHSLHDARQFLKEKDFDICGV--EITENAMPVNQHPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYG-----------GGTASLNVTVAASIVLHHFGVWAGFGERSRDGNKFVVAE 164          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_003061112.1 (predicted protein, partial [Micromonas pusilla CCMP1545] >EEH54762.1 predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 47/169 (27.81%), Postives = 83/169 (49.11%), Query Frame = 0
Query:   26 VDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVC-LERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ 194
            + +K N GT  RC+ AFG   + LVG     ++  G  G+ +++    + S  A R+      +RV  +  +E   +++++ +RPF G T F+   +G  LT+ Q+A C   V++   G            G  +L   VA S+V+HHF  W+       +G+K+V+ +
Sbjct:    7 IAKKHNVGTIARCATAFGVRAVVLVGA--KAYNTFGCKGASNHVDFLHYPSLHAAREGLTAPPHRVRKIMGVEIMDDAVAIDERPFEGSTAFIMGNEGDGLTDAQKAICDGFVYIRQHG-----------VGTASLNVSVAASIVMHHFALWAAYPERGREGEKFVVAE 162          
The following BLAST results are available for this feature:
BLAST of NO04G03550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KXZ46246.11.400e-1431.70hypothetical protein GPECTOR_45g116 [Gonium pector... [more]
ETI32354.12.000e-1332.09hypothetical protein F443_20820 [Phytophthora para... [more]
XP_008898116.12.000e-1332.09hypothetical protein PPTG_06095 [Phytophthora para... [more]
KUF91942.12.000e-1332.09hypothetical protein AM587_10017586 [Phytophthora ... [more]
PRW32518.12.700e-1330.48family tRNA rRNA methyltransferase [Chlorella soro... [more]
XP_005846737.13.500e-1331.53hypothetical protein CHLNCDRAFT_17312, partial [Ch... [more]
XP_024361104.11.700e-1229.28uncharacterized protein LOC112275201 [Physcomitrel... [more]
OWZ09223.12.900e-1229.25RRNA methyltransferase 1, mitochondrial [Phytophth... [more]
XP_015939488.18.600e-1230.64uncharacterized protein LOC107465028 [Arachis dura... [more]
XP_003061112.11.100e-1127.81predicted protein, partial [Micromonas pusilla CCM... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03550.1NO04G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579207gene_2132Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g35gene1894Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03550.1NO04G03550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03550 ID=NO04G03550|Name=NO04G03550|organism=Nannochloropsis oceanica|type=gene|length=994bp
ATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAATCCCAGGGGCC
GCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGgtgagatggtgta
agcgcacaaccgacctcccctcccctccccaagttaacaatcccgacgaa
ccatacgacggcagACGAATGCGGGGACGACGGTGCGCTGCAGCGTAGCA
TTTGGCACGGCATGCCTTTGTCTGGTAGGTGTGGGGCGGCCACGCTTTAG
CAAGCATGGGAGCTTTGGAAGTCATCACTACTTGTCCACACGAGCCTTTT
CTAGCTGGAAGGCTTTGCGCCAGCACGCCGACAACCAGAAGTACCGCGTC
ATAGGAGTCTGTCTTGAACGAGCCGTCGAATCATTGTCCGTACACAAACG
GCCATTCAATGGCCCCACCATCTTTGTGACGTCAACTAAAGGCAAGACTC
TGACGGAGGAGCAGAGGGCAGCTTGCCACTCACTCGTGCACGTTCCTATC
ATGGGCGGGCCCGCGGCAAATGCTGTGTTCAGTCCTTCCGGCGGTGGGCT
GACCTTAGAGGCAGATGTGGCCTTGTCTGTCGTGTTGCATCACTTTACCG
CTTGGAGCCAAAGAGAGGCACACAGgtgggttgatggtggggttggggaa
aatggagcttcgtgtgtgcgtctaagctcacgtgagcggatacgatatgt
gcaacctttccgttcctccaaccctttttttaaaataatataattcgcct
ttgacacagGTTTCAGGGCCAGAAATACGTGCTCGGTCAGCCAGGGAGGA
CAGGCGAGGTGGACAAAGAAGAGCAGCAACGACTGCAAGCAGAGAGGCGA
CAGCAACGGCAGGTAGCGGATATTTTGTCGCAACAGGAAGGGGGGAAAGG
GGAGGAGGAAGGGGAGGGGTGGCCGGATTTGTGGGGAGCTGACGACTATA
GCTCGAAAGAGGAGGAAAGGAAAGTAACCAATTCGTGTACGTGA
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protein sequence of NO04G03550.1

>NO04G03550.1-protein ID=NO04G03550.1-protein|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MEASPPQQDNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLV
GVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAV
ESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAV
FSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQPGRTGEV
DKEEQQRLQAERRQQRQVADILSQQEGGKGEEEGEGWPDLWGADDYSSKE
EERKVTNSCT*
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Synonyms
Publications