NO04G03550, NO04G03550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03550 vs. NCBI_GenBank
Match: KXZ46246.1 (hypothetical protein GPECTOR_45g116 [Gonium pectorale]) HSP 1 Score: 89.7 bits (221), Expect = 1.400e-14 Identity = 71/224 (31.70%), Postives = 105/224 (46.88%), Query Frame = 0 Query: 7 QQDNKKES-QGP------PHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAF--------SSWKA----------------LRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG-QPGRT 198 ++DN ES GP P ++ V +K N GT VR + AFG +CL VG +F+ GS GS +++ R + +SW + QH + + RV+G+ E +L VH+ PF GPT F+ +G+ L+E+Q A C V++P G P L + VA S+VLHHF W+ +G KYV+ +P RT Sbjct: 3 EEDNATESVAGPSGQEPVPCYIITHSVAKKHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFRHYENLQQCVQASWVPHTRTAPSPYGPVYLVFVPQHLKEAEGCRVLGI--EICSGALPVHEHPFTGPTAFLLGNEGQGLSEKQMALCDGFVYIPQHG---------PGTASLNVRVAVAASIVLHHFAIWAAYPEREREGYKYVVADKPLRT 213
BLAST of NO04G03550 vs. NCBI_GenBank
Match: ETI32354.1 (hypothetical protein F443_20820 [Phytophthora parasitica P1569]) HSP 1 Score: 85.9 bits (211), Expect = 2.000e-13 Identity = 69/215 (32.09%), Postives = 99/215 (46.05%), Query Frame = 0 Query: 21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEGGKG 231 MV + N GT +R + AFGTA + + VG RF HG+ + Y+ F + R++ + + G+ + A ES + H P+ G + FV + L+EEQRA C VHVP G + + LTL+ V ++ LHHFTA++Q EA QG K+VL E Q A R +R AD +E G G Sbjct: 15 MVLSNKSGRQNLGTYLRTASAFGTAQVLV--VGSERFGTHGAHRAQKYVDVVQFYDFAEARKYLKTKGCTIFGLSNQPA-ESFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSQLTLDTTVITAITLHHFTAFAQFPVCAIEATSTQG-KFVLDAYPTFDPAHNERGQEKAAMREAKRANADDGLSEENGLG 219
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_008898116.1 (hypothetical protein PPTG_06095 [Phytophthora parasitica INRA-310] >ETK72728.1 hypothetical protein L915_20233 [Phytophthora parasitica] >ETL26181.1 hypothetical protein L916_20101 [Phytophthora parasitica] >ETL79395.1 hypothetical protein L917_19969 [Phytophthora parasitica] >ETM32642.1 hypothetical protein L914_19996 [Phytophthora parasitica] >ETN17045.1 hypothetical protein PPTG_06095 [Phytophthora parasitica INRA-310] >ETO61086.1 hypothetical protein F444_20838 [Phytophthora parasitica P1976] >ETP02215.1 hypothetical protein F441_20682 [Phytophthora parasitica CJ01A1] >ETP30377.1 hypothetical protein F442_20616 [Phytophthora parasitica P10297]) HSP 1 Score: 85.9 bits (211), Expect = 2.000e-13 Identity = 69/215 (32.09%), Postives = 99/215 (46.05%), Query Frame = 0 Query: 21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEGGKG 231 MV + N GT +R + AFGTA + + VG RF HG+ + Y+ F + R++ + + G+ + A ES + H P+ G + FV + L+EEQRA C VHVP G + + LTL+ V ++ LHHFTA++Q EA QG K+VL E Q A R +R AD +E G G Sbjct: 15 MVLSNKSGRQNLGTYLRTASAFGTAQVLV--VGSERFGTHGAHRAQKYVDVVQFYDFAEARKYLKTKGCTIFGLSNQPA-ESFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSQLTLDTTVITAITLHHFTAFAQFPVRAIEATSTQG-KFVLDAYPTFDPAHNERGQEKAAMREAKRANADDGLSEENGLG 219
BLAST of NO04G03550 vs. NCBI_GenBank
Match: KUF91942.1 (hypothetical protein AM587_10017586 [Phytophthora nicotianae]) HSP 1 Score: 85.9 bits (211), Expect = 2.000e-13 Identity = 69/215 (32.09%), Postives = 99/215 (46.05%), Query Frame = 0 Query: 21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEGGKG 231 MV + N GT +R + AFGTA + + VG RF HG+ + Y+ F + R++ + + G+ + A ES + H P+ G + FV + L+EEQRA C VHVP G + + LTL+ V ++ LHHFTA++Q EA QG K+VL E Q A R +R AD +E G G Sbjct: 1 MVLSNKSGRQNLGTYLRTASAFGTAQVLV--VGSERFGTHGAHRAQKYVDVVQFYDFAEARKYLKTKGCTIFGLSNQPA-ESFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSQLTLDTTVITAITLHHFTAFAQFPVRAIEATSTQG-KFVLDAYPTFDPAHNERGQEKAAMREAKRANADDGLSEENGLG 205
BLAST of NO04G03550 vs. NCBI_GenBank
Match: PRW32518.1 (family tRNA rRNA methyltransferase [Chlorella sorokiniana]) HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13 Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 0 Query: 17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHA----DNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRTG 199 P +++ K N GT RC+ AF +CL VG +F+ G+ GS ++ FS + L + +N+ V+GV + + VH PF G F+ +G L E+Q A C S +++P G G +L VA S++LHHF W+ + +GQK+V+ + P RTG Sbjct: 19 PACYLISYNQQSKHNIGTLARCATAFNVKEVCL--VGSRQFNTFGAHGSSEFVE---FSHYHTLEECVADLKENKGCTVVGVEIMDGAQ--PVHSFPFKGNAAFMLGNEGAGLNEKQLALCDSFIYIPQYG-----------AGTASLNVAVAASIILHHFAHWAGYPERQREGQKFVVAERPQRTG 187
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_005846737.1 (hypothetical protein CHLNCDRAFT_17312, partial [Chlorella variabilis] >EFN54635.1 hypothetical protein CHLNCDRAFT_17312, partial [Chlorella variabilis]) HSP 1 Score: 85.1 bits (209), Expect = 3.500e-13 Identity = 64/203 (31.53%), Postives = 101/203 (49.75%), Query Frame = 0 Query: 21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSW-KALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRTGE--VDKEEQQRLQAERRQQRQVA 220 ++ V +K N GT RC+ AF LCL VG +F+ G+ GS Y+ +++ + + DN+ V+GV E + VH+ PF G T F+ +G+ L E+Q A C S +++P G G +L VA S+VLHHF + + +G K+ LG+ P RT V + L AER+++++ A Sbjct: 2 LITYNVSKKHNLGTLARCATAFNVRQLCL--VGSRQFNTFGAHGSSEYVDFCHYNTLDECCQDLKDNKGCTVVGV--EIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLALCDSFLYIPQYG-----------AGTASLNVAVAASIVLHHFALHAGYGERQREGYKFTLGERPQRTAPRGVVPLSGEELAAERQRRQRAA 189
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_024361104.1 (uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361105.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361106.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361108.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >XP_024361109.1 uncharacterized protein LOC112275201 [Physcomitrella patens] >PNR30388.1 hypothetical protein PHYPA_026704 [Physcomitrella patens]) HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12 Identity = 65/222 (29.28%), Postives = 104/222 (46.85%), Query Frame = 0 Query: 1 MEASPPQQDNKKESQGPP--HLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG-QPGRTG--------EVDKEEQQRLQAE 212 +E S + N +G P ++ V ++ N GT R + AFG + + L VGR F+ GS G+ +L R F + A ++ ++ + GV E + VHK PF G T FV +G L++++ C V++P GP G +L VA S+VLH F W++ GQK+V+ +P R G + E++RL++E Sbjct: 169 VEESKTKSGNLPRKEGKPFESFLLVHNVAKRHNLGTLARSATAFGVSEIIL--VGRKDFNAFGSHGATLHLQFRHFQTLPAAVKYLKDKNVSICGV--EITEGAAGVHKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVYIP-QNGP----------GTASLNVTVAASIVLHQFAVWAEFPERERDGQKFVVADRPVRRGPRNMCPDDPAEVSERRRLKSE 375
BLAST of NO04G03550 vs. NCBI_GenBank
Match: OWZ09223.1 (RRNA methyltransferase 1, mitochondrial [Phytophthora megakarya]) HSP 1 Score: 82.0 bits (201), Expect = 2.900e-12 Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = 0 Query: 21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQ-----REAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQEG 228 MV + N GT +R + AFGT + + VG RF HG+ + Y+ F + R++ + V G+ ++AV S + H P+ G + FV + L+EEQRA C VHVP G + + LTL+ V ++ LHHFTA++Q EA QG+ + P +K +++ ++ D LS+ +G Sbjct: 13 MVLSNKSGRQNLGTYLRTASAFGTTQVLV--VGSERFGTHGAHRAQKYVDVVHFYDFAEAREYLKAKGCTVFGLA-KQAVGSFAAHATPYEGTSAFVVDNEFPGLSEEQRAICDHFVHVPFHGEQ------TEASSDLTLDTTVVTAITLHHFTAFAQFPVRAIEATSTQGKFVLDAYPTFDPTHNKRGEEKAAMREAKRANADDGLSEGDG 215
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_015939488.1 (uncharacterized protein LOC107465028 [Arachis duranensis] >XP_016196715.1 uncharacterized protein LOC107638025 [Arachis ipaensis]) HSP 1 Score: 80.5 bits (197), Expect = 8.600e-12 Identity = 53/173 (30.64%), Postives = 81/173 (46.82%), Query Frame = 0 Query: 21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ 194 +V + ++ N GT R + AFG + L L VGR F+ GS GS +L R F S RQ + + + GV E ++ V++ PF T F+ +G L+ ++ C V++P G GG +L VA S+VLHHF W+ G K+V+ + Sbjct: 7 VVVHNIAKRHNVGTLARSATAFGVSELIL--VGRRDFNSFGSHGSSAHLRFRHFHSLHDARQFLKEKDFDICGV--EITENAMPVNQHPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYG-----------GGTASLNVTVAASIVLHHFGVWAGFGERSRDGNKFVVAE 164
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_003061112.1 (predicted protein, partial [Micromonas pusilla CCMP1545] >EEH54762.1 predicted protein, partial [Micromonas pusilla CCMP1545]) HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11 Identity = 47/169 (27.81%), Postives = 83/169 (49.11%), Query Frame = 0 Query: 26 VDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVC-LERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ 194 + +K N GT RC+ AFG + LVG ++ G G+ +++ + S A R+ +RV + +E +++++ +RPF G T F+ +G LT+ Q+A C V++ G G +L VA S+V+HHF W+ +G+K+V+ + Sbjct: 7 IAKKHNVGTIARCATAFGVRAVVLVGA--KAYNTFGCKGASNHVDFLHYPSLHAAREGLTAPPHRVRKIMGVEIMDDAVAIDERPFEGSTAFIMGNEGDGLTDAQKAICDGFVYIRQHG-----------VGTASLNVSVAASIVMHHFALWAAYPERGREGEKFVVAE 162 The following BLAST results are available for this feature:
BLAST of NO04G03550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03550 ID=NO04G03550|Name=NO04G03550|organism=Nannochloropsis oceanica|type=gene|length=994bpback to top protein sequence of NO04G03550.1 >NO04G03550.1-protein ID=NO04G03550.1-protein|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bpback to top Synonyms
Publications
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