NO04G03480, NO04G03480 (gene) Nannochloropsis oceanica

Overview
NameNO04G03480
Unique NameNO04G03480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5343
Alignment locationchr4:948768..954110 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:948768..954110 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G03480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009494NSK009494Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03480.1NO04G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579185gene_2124Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g42gene1887Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03480.1NO04G03480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03480 ID=NO04G03480|Name=NO04G03480|organism=Nannochloropsis oceanica|type=gene|length=5343bp
ATGAATGTGCTCTTACCCCGTGGTGGATGGCTAGGAGGGCAGGAGGCAGG
TTGGGGCGGCGTCGCCTCAAAATTCAAGAATGCCGCCCATCAGTTGAGAA
TCATCTCCAAATTCTCAAACTCTACACCCATACCTCACGCACAGGTCGCG
GTCATGTATGGTGAGCACATGCAGCAAATCCCATCGGAGTACGGTTCGCA
AGCTGGCATTTTGTCAGCGGTTGTCGAGTCGTTGCCGACCTCAGGTAGGA
GCGTGTGCGGCATCAGCAGCACAGGAGAGTCCTCGTCCGAGGCCACCACT
ATCGAAGTGTGCTACCACACCTCGCGGCGTTCATTGCTCCAGGCCCTGCA
GCTTTCCCAGGTACTGCTGTCTGCCGTCGACAAAACCATCCAAACTATCA
ACGATCCCGAGATGATGCAAGGTAATGGATCCCTGCTCGCAGTCGAGGCT
ATGAAAGCGCGACTGCTCGGGTTCAAAGAAATGGCCCGCAAGAGCCGGAC
ATTGGAGCAGAGGGCGCTGAACGCACTTGACAATATGCGGGCACCGGTAA
CGCACGAGACCGCGGGAGCTGGATTGCCTGCCTCGGGGTCGGGTTGGATG
TCTCTCACGGAAgtggggctgcttatcaaggggcttgtgtccccccaaca
aatcgagactgaatgcgtgctgcaccgggaaaatgccaaattttgaatga
agacggagagcttgcaacgccagGTTGAATTGCTTTCCTCTTCCTTGAAG
GCCGCCGACACCACATCTTCGGCGAGGGCAGCGCAGGTGGATGTCCCTTC
CTGGGTAATACGGGCCACGAAGCAGAATGCCCTTGATAATGGGGCCAATG
ACGGCACTGCAAAGATAGTGGCAAAGCTGCGGAGAGAATTGGAGGAGAAA
GAGGGGTTGCTAGCAGGGTTAAGGACAACGGTGCGCGACATGGCTGGTGG
CCGGTACCCTATTTTGGAGGAGAGGAATGATTTGCGAGCAAAGATTCAGg
tgagtgtatgtccacgggaggggagaggctcttgcggcattactatcaaa
gacaagaagtgaataggtatgatcgaaacatttatttgaattccacacac
agACACTGCTGCAGTCGCAAGCCCACTTGCTGGAAGACAGGGAGACTCTT
GAGgtaagggggagtcagcgggtctggtcgaactttcgcccctggttatt
aaactcatcatttcctctgcacttctcccattctcatatacagACACACA
ATGCTCGCATCGAGAGTCAATTGCGACGCACGGCTGATCGTTGCCAGGAG
TTGGAAGCTTACgtgcggttcctcgacgctactgcagtggcggggaaaga
agggcgacgagaggggagatttgcttccgcctctttcgccttcctgccct
cccatggtccattgccagCATGTCGAGGTCGTCAGCCTTTTGGGTGCCCA
AGCAGTGTCAATAAATGAAGCGAATGAACCAGAAACGGCACCCGATAACA
CTATCGCCGTGATGGGCGCCAAGGAAGAACAAGgtaaaatcgggacaact
caatctttcttcttgtggcttctatcgttctttttaaagccgctgcaatt
ggaggaggatcaccacaattactcgccgccagccatgattgtgtggagtt
tgagtcacgttgtcgtccttgtagtgagaacgaaagaagggagaatactc
tgggtccagcctactgattcgacagatgaccggatttttcaaggcacggc
tgcttttcaccttgatttcagaataaagcactgtgaaaccagtcgcagct
gatagaccaagcacattacaaacattaatcgagtcacatttattggtcgt
tcgtgtctcgcatatgattggaataggccggagcgatgggctctcctcac
aagagcgaaagcattagataggaaccgaaacaaaaaaatgatgaacgaaa
aagaggtatgtttacgatacagCTGCGAGCTACAGAAACACATCAGGCTG
CCAGCGAATCGAGGGAACCATgtaaggaggggagggttcaaccatatcct
tgcgcttcatcatgacgactacttgccccgttcgagttgcctttgttcca
atcacatgatgtagccagaacagaatggagccttttactacaccctttac
aaagctctacctcattattcatcatagCGAAGGTTTGTCCGCCATGGACA
GAAGAGGGTCGCCGACCCGGTGCCGGAATCTGGTCGCCATCTTCGTCCTG
CTGCTACTTGCTGCCTCGGAGGGCTTTCGAGTACCATTATTTTCCAGCCC
TAGAGTTCATGGGTCAAGGTCCAAGACCACTCTGTATGCCACTGAGGCGG
ATTCCAAGACTGGCGGCTTAAACGTCACGGTGgtaagtcaatgggtatga
gttactaagactccaaactgtgacagtaggctgcagcgggcgttgtccct
ggctagggaatgacagacaattttctatctgtctcatacgtcatgtcgct
ctgataactccatacagCCATCTGTAGCAGGTATCGCTAAGCCCAATGAA
AGCATCACCGAAGAGAAGAAGCCAATCGTGGCCGCGGCTGAGGGAGCCAC
GAACAGACCCCGTGTCGCTGCCCCGGCCCTCAAGGTAGTAGCAGCAGCTC
CAGCGAAGGCAACGGCTCCGGCTAAAGCAGCGCCAGTACCTGCGGTGGCG
AAGGCCTCCATGCCCGATCCCATGGCAGCTTTCAAGAAGGCCGTCACTCC
CGCTGCAAAGCCAAAGGCCCCTAAGCCTGCTCCCACTCCCCCACCGGCCG
GCAAGCCACCTAAGAGCCCCCAGCCCTTTAATGGGGAGCGGCTGAAGGAA
GAAATAGCCACTGCTGTGGGCGGGGCAGCCACGGGGTTCATTGTTGGAAA
AGTACTCGAAAGTCAAGCGGCGAGCGATGAAGCCAGCTTGACGGCGGCCT
CAGGCGCGGCGGTGCTAGGGCTGGTGTCTTACATCGTGTCTCGAGCTGAT
AATCTGGCAGGAGTAGCAGCACGCAAGACCTTCGGAGGCTTGACCCTAGG
TTTTGTTAACGGCGTGACCGGTGCCATTACGGGTGCAGTCTCTGGTGCGT
TGAATGGGATCAAGCGTGGGGTGCAGAAAAAGGTGGATGATATCAAGAGC
ACACCGGGTAGAATTCTGAATTCGATTAAAGCAGGTATCAATCAGAAGGT
TGAGGACGTGAAAGCTTTGCCGGGGCGTACTGCTCAGGCGGCCAAGCGCA
AGGCACAGGCGACGGCTGAGGAGATTGCTGCTATTCCTGGGCGGACGGCC
ACGGCTATCAGCAACTCGGTTACGACTACAGTAGAGGGAATCCAGGTGGC
TGTCTCTGATACTGTAGACAGCATCACTCGCGCCCCTTCGACGCTGATTG
CTACTATCACCGGCGACGCGCCTTCCTCCCCTGCATCCAAGTCCTCCTCT
ACCGGCACTGCTTCCTTGTCCTCTGTTGTGAAATCGGTGCCAGCGGCCGC
GCCGTCCAAGCCGGCTGTGTCCTTGAAGATTGGTGGCAAACCCATCGATC
CAAGCAGCATCAGCAGCAGTAGCAGTAGCAGTAGCAGTAGCGCCGCAAAG
CCTAAGTCATCCTCGTCTCCCCTCTCCTCCTCCGTTTCATCCAGCCCGGC
AGTCACTCCGGCTCTCAAGTTTCCTAACGCGGGACCAGCAGCAGCTAAGG
CGCCTGTACCAGCGGCCAAAGCGCCCGAAAAGAAGAAAGAAGCGTCCGGT
GGCTTTTCATTCGGTGGCCTTTTTTCCCCCGAAAAGGAAGTTGCCAGGAA
GCCCGCGGCCCCTGCTGTTACTAGCTCAACAGCGGAAGCAGCCAAGCCCG
CCTTGAAATTCCCTACCGCGGGACCTTCTGCATCTAAGACGCCCGTGACG
GCCATTCCCGTAGCTGCCAAAGCACCCGAAAAAAAGAAAGAAGCGTCTGG
TAGCTTTTCGTTCGGTGGCCTTTTTGCTCCAGAAAAGGAATTAAAGAAGA
GCGTGCCTCCTGCTGCAGCTGGCGCATCAGCAACGGCCAAGGCAGCGATG
GCCAGTAAATCGGCGGCTTTAAACTTTCGTGCCAGCGTACCTACTGTCAC
GAAATCGATGGCTGCTGCCCCGGTTTCACCTGCCTCAGCAGCAAAAGCAA
CGGAAAAGAAGGAGCCTGCCGGATCGCCTTTCAGTAGTCTATTTGCGCCC
GCCCCCGAGGTCAAGAAGATTGCTCCTCCCGCTCGTCCCCCCACAACCAC
CCCAGTGAAGACGCCTAGTCCTCCACTTGATTCTTCCAACCCTTTCGCGA
GTCTCTTCGGTTCAGGCTCTTCCTCCACAGCTCCCAAAAAAGCGAGCAGC
AGCACTTCCTCCTCCCCCTCCTCCTCCTCCACCACCACCACCAGCTCCTC
TGCCGCCGCCATGAAGAAATCTTCGCCAGCGAATGCCCCCCTAAAAAAAA
CACTTCCTTCTCCCCCAGCCGCCGCTAAGGTCGTCTCAAAGGTCACCACG
CCCCCCCCTCAAAAAAAGAATTTGTTTTCCCCTCCCCCTCGACCAAAAGC
ATCTGTCAACCCCATGCTCTTCAAATCTCCTGGCAATACGGGCAAGGCCA
GCTCCACGAAGGAAAAGGAAGCAGCTGCCGCCGCTCCTGTAGCAGCAAGT
AAGCCTGTCTTTCGCTCCCCTCCTCCTCCCTCCCGTCCTGCTGCACCGAC
CTTCCCCAAGGCTGCCTCTCCCTCTGTCAGAAAGACAACGCCTGCGCCCA
CACCAGCAGTTGCACCCAAGAAGGATTCGAGCGGCGGTGGTTTGTTTGGT
GGTCTTTTTGGCTCCTCCTCCTCCTCTTTATCCTCTTCCTCATCCTCTTC
AAATATCGGCAGGGCCAAAGCTGGCAAAGCGGCCTCCAAACCCTTACCAC
CTCGGCCTGCACCAGCAGCTGCTGCCCCTAAGTCTGCGCGTAAGGCCAGC
AGCGGCCAAGGTGCCTTAGGAGGTATTTTCGGTGGTGGGTCTTCGAAGGC
CCCCCCTGTCAAGCTGGCCGCCGCTGCTGCTACTCCTGCAGCTGCTCCCA
AGAAGCCGCAAGCCTCTGCTGCGTCCAAACCCAAGGTGGTCGCGTCTGCG
CGTGCTGATAAAACCTCGTCGTCCTCCTCCTCCTCGCCGCCGTCGAGAAG
TGGAGCTGGGTTATTTGGTGGACTCTTTGGGAACGGTGGCGGAGAAGCGA
GCAAGCCGAAACAGGTCGCGACATTGAAGGCAGGGAGTGCTCCTAAGCCT
GGAGGAAAGCTGGACGAGGTGAGCTTGCAGTCACTGAAGCAAACTATCCG
CCAGGAACAAAGCCAGGCACTCAAGTCTTTGGGCAAGAAGTAA
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protein sequence of NO04G03480.1

>NO04G03480.1-protein ID=NO04G03480.1-protein|Name=NO04G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1401bp
MNVLLPRGGWLGGQEAGWGGVASKFKNAAHQLRIISKFSNSTPIPHAQVA
VMYGEHMQQIPSEYGSQAGILSAVVESLPTSGRSVCGISSTGESSSEATT
IEVCYHTSRRSLLQALQLSQVLLSAVDKTIQTINDPEMMQGNGSLLAVEA
MKARLLGFKEMARKSRTLEQRALNALDNMRAPVTHETAGAGLPASGSGWM
SLTEVELLSSSLKAADTTSSARAAQVDVPSWVIRATKQNALDNGANDGTA
KIVAKLRRELEEKEGLLAGLRTTVRDMAGGRYPILEERNDLRAKIQTLLQ
SQAHLLEDRETLETHNARIESQLRRTADRCQELEAYHVEVVSLLGAQAVS
INEANEPETAPDNTIAVMGAKEEQAASYRNTSGCQRIEGTIEGLSAMDRR
GSPTRCRNLVAIFVLLLLAASEGFRVPLFSSPRVHGSRSKTTLYATEADS
KTGGLNVTVPSVAGIAKPNESITEEKKPIVAAAEGATNRPRVAAPALKVV
AAAPAKATAPAKAAPVPAVAKASMPDPMAAFKKAVTPAAKPKAPKPAPTP
PPAGKPPKSPQPFNGERLKEEIATAVGGAATGFIVGKVLESQAASDEASL
TAASGAAVLGLVSYIVSRADNLAGVAARKTFGGLTLGFVNGVTGAITGAV
SGALNGIKRGVQKKVDDIKSTPGRILNSIKAGINQKVEDVKALPGRTAQA
AKRKAQATAEEIAAIPGRTATAISNSVTTTVEGIQVAVSDTVDSITRAPS
TLIATITGDAPSSPASKSSSTGTASLSSVVKSVPAAAPSKPAVSLKIGGK
PIDPSSISSSSSSSSSSAAKPKSSSSPLSSSVSSSPAVTPALKFPNAGPA
AAKAPVPAAKAPEKKKEASGGFSFGGLFSPEKEVARKPAAPAVTSSTAEA
AKPALKFPTAGPSASKTPVTAIPVAAKAPEKKKEASGSFSFGGLFAPEKE
LKKSVPPAAAGASATAKAAMASKSAALNFRASVPTVTKSMAAAPVSPASA
AKATEKKEPAGSPFSSLFAPAPEVKKIAPPARPPTTTPVKTPSPPLDSSN
PFASLFGSGSSSTAPKKASSSTSSSPSSSSTTTTSSSAAAMKKSSPANAP
LKKTLPSPPAAAKVVSKVTTPPPQKKNLFSPPPRPKASVNPMLFKSPGNT
GKASSTKEKEAAAAAPVAASKPVFRSPPPPSRPAAPTFPKAASPSVRKTT
PAPTPAVAPKKDSSGGGLFGGLFGSSSSSLSSSSSSSNIGRAKAGKAASK
PLPPRPAPAAAAPKSARKASSGQGALGGIFGGGSSKAPPVKLAAAAATPA
AAPKKPQASAASKPKVVASARADKTSSSSSSSPPSRSGAGLFGGLFGNGG
GEASKPKQVATLKAGSAPKPGGKLDEVSLQSLKQTIRQEQSQALKSLGKK
*
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Synonyms
Publications