NO04G03370, NO04G03370 (gene) Nannochloropsis oceanica

Overview
NameNO04G03370
Unique NameNO04G03370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr4:929730..931274 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:929730..931274 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G03370 vs. NCBI_GenBank
Match: EWM28741.1 (hypothetical protein Naga_100002g53 [Nannochloropsis gaditana])

HSP 1 Score: 98.2 bits (243), Expect = 4.500e-17
Identity = 164/291 (56.36%), Postives = 187/291 (64.26%), Query Frame = 0 
Query:    8 AMVATILVVVCCFSKMGAAEEGFLGKATDKIKHAVGLETTDEATDREAYEQGRDAIKHGEGMMEHAKEKIGEMLHHKVKEPMEDNVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHAHDVKQRGKEGLAYATGAKDEAKGEGETLIGSATRKVKEALGTEHHEKP---TMEKATESGKKAMDKVKEKVGEL 296
            A  A +LV+V       AAEEGF+ KA DKIKH VGLET +EA   EAYE+GR  +KHGE +ME AKEKIG + HH  KEP +  ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +VKQ+G+EG A+  G KDE  G GETL+G+ATRK+KE  G EH  +     M+   E  ++AMD+ KE V EL
Sbjct:    8 AFGAVLLVLV------AAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVEEL 292
[Close]
BLAST of NO04G03370 vs. NCBI_GenBank
Match: EWM28740.1 (hypothetical protein Naga_100002g53 [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.400e-15
Identity = 160/285 (56.14%), Postives = 183/285 (64.21%), Query Frame = 0 
Query:    8 AMVATILVVVCCFSKMGAAEEGFLGKATDKIKHAVGLETTDEATDREAYEQGRDAIKHGEGMMEHAKEKIGEMLHHKVKEPMEDNVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHAHDVKQRGKEGLAYATGAKDEAKGEGETLIGSATRKVKEALGTEHHEKP---TMEKATESGKKAMDKVK 290
            A  A +LV+V       AAEEGF+ KA DKIKH VGLET +EA   EAYE+GR  +KHGE +ME AKEKIG + HH  KEP +  ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +VKQ+G+EG A+  G KDE  G GETL+G+ATRK+KE  G EH  +     M+   E  ++AMD+ K
Sbjct:    8 AFGAVLLVLV------AAAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAK 286
The following BLAST results are available for this feature:
BLAST of NO04G03370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28741.14.500e-1756.36hypothetical protein Naga_100002g53 [Nannochlorops... [more]
EWM28740.11.400e-1556.14hypothetical protein Naga_100002g53 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009482NSK009482Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03370.1NO04G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579115gene_2113Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g53gene1877Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03370.1NO04G03370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03370 ID=NO04G03370|Name=NO04G03370|organism=Nannochloropsis oceanica|type=gene|length=1545bp
TGACCTCCTATCTCCCCGTTCTCGCACACCAATACAACACGGAGGCGAGA
AACTAGCCGCGACAAGGTATTACTACATTTTCAATTAGACAACACTATTC
AAGTCAACAAACAAAGCTGCGAGCATGGTGCGCATCAGTTTCTTCGCAAT
GGTGGCCACGATCCTCGTTGTGGTGTGTTGCTTCAGCAAAATGGGTGCGG
CGGAGGAGGGATTTTTGGGGAAGGCAACCGACAAGATTAAGCACGCCGTA
GGATTGGAAACAACAGATGAAGCTACCGACCGTGAGGCGTATGAGCAGGG
AAGGGATGCAATCAAGCACGGCGAGGGTATGATGGAGCACGCCAAGGAGA
AGATTGGAGAAATGCTCCACCATAAAGTGAAGGAGCCAATGGAGGACAAT
GTGGAAGCAAGCAAGCGCAAGGCCCAGGAGCAGGCAGAGGCCGCCAAGGC
CCAGGGACAAGGTATCTACGAGACCATTAAGGAGAAGATGACTGGGCCGT
TCCATTTGGCAAAGGAGAAAGGTCAAGACGCGATGAAGAGCGCGCAGGAG
CGGGCGGAGGCAAGCGCCGAGTATGCGACTGAGGCCGCTGAAGAAACGCG
CCGACAGAGCACCCAAGGTTACGCGAAGACTAAAGCCAATGTTGACCAGG
CTGCTCAGAAGGGCCAGAGCACGATTCGTCAGATGAAGGAGGACGTGGAG
AACGTACTTGAACAGCAGAAGATCAAAGCCGAAGGTGCGTACGAAACCAT
GAAAGAAAAGACCGGCGAGACCGTGGAACACGCTCAGCAGCACGCTCACG
ACGTCAAGCAGCGCGGGAAGGAGGGCTTAGCATACGCTACGGGTGCTAAA
GATGAAGCGAAAGGCGAGGGCGAGACGCTGATTGGAAGCGCTACGCGCAA
GGTTAAGGAGGCTTTGGGGACGGAGCACCATGAGAAGCCCACGATGGAGA
AGGCGACTGAGAGTGGGAAAAAGGCTATGGACAAGGTAAAGgtacgaaaa
gtcttgcaaaggggacgaaagacttgcacaatgaatgaaggatgtgaaac
atagatcgggagagagattgaaggcgaattgttcgaacggttaaggggtg
aaaatggcaaaatgttattggttgacaggcatattcctcttttctacata
acagGAAAAAGTCGGGGAGCTTTAGATGATCTCTCACCACCATCACATGT
CAACAGAGGAGCCAGGCACTAATAAGGGGGAGAAGGGGCGGGGAGATGGA
GAATGCTTCCACAAGCAAATCAGTATTGACGTTGGATGTGATGGCATGCG
AAAACAGAAGTTTAAATCTTCAATGTGCAGCAAATGGGATACTTCTAAGG
TGACAAATTGAAAGGAAGAGACAGGAGAGAAAAAACAAAAGAAATTGCGA
AAGCGCACAGGAAGGAGGGGAGAGAAAGAAGAGATGTCTATCAAGATAAC
CAAAAAAAGGAAGGGAGGGATCAATTACATTCATTCGCATGCAAAATTTA
AGGAGGGAAGAAGTTATGAAAGGAAAAAAAGACAATATCCAAGCA
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protein sequence of NO04G03370.1

>NO04G03370.1-protein ID=NO04G03370.1-protein|Name=NO04G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MVRISFFAMVATILVVVCCFSKMGAAEEGFLGKATDKIKHAVGLETTDEA
TDREAYEQGRDAIKHGEGMMEHAKEKIGEMLHHKVKEPMEDNVEASKRKA
QEQAEAAKAQGQGIYETIKEKMTGPFHLAKEKGQDAMKSAQERAEASAEY
ATEAAEETRRQSTQGYAKTKANVDQAAQKGQSTIRQMKEDVENVLEQQKI
KAEGAYETMKEKTGETVEHAQQHAHDVKQRGKEGLAYATGAKDEAKGEGE
TLIGSATRKVKEALGTEHHEKPTMEKATESGKKAMDKVKEKVGEL*
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Synonyms
Publications