NO04G03330, NO04G03330 (gene) Nannochloropsis oceanica

Overview
NameNO04G03330
Unique NameNO04G03330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1481
Alignment locationchr4:920284..921764 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:920284..921764 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO04G03330 vs. NCBI_GenBank
Match: OEU16235.1 (hypothetical protein FRACYDRAFT_238823 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.9 bits (180), Expect = 8.400e-10
Identity = 44/156 (28.21%), Postives = 72/156 (46.15%), Query Frame = 0
Query:  148 TPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATG-------------------------------------ILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALG 267
            T + E +      R M+++YG + + TY  VYV T+  LF  ++SG+      LD+  +++  +G                                      LE YSW++P    +Q NP   NF +AWI+TKFTEP+R+ + + + P IA+ +G
Sbjct:  180 TKLTERKPNKQSFRSMLRQYGPIFIGTYGVVYVSTVFGLFMGIQSGI------LDATSIMDYLSGTAXXXXXXXXXXXXXXXXXXXXNTIQSAASTMTYMVEFLEYYSWTKPLAPIVQENPWTANFGIAWIMTKFTEPIRLGLAVAVTPSIAKKIG 329          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: CCA16393.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-9
Identity = 38/125 (30.40%), Postives = 70/125 (56.00%), Query Frame = 0
Query:  157 IGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSG----------WLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPAR 272
            + + + + ++YG VA+ TY  +Y   LG ++ ++E+G+   +  + S               K   + E Y  ++ +++  + N   G+F +AW+ TKFTEP+R+ +T+ I PRIAR LG+AP +
Sbjct:    3 LNRFKDLWRKYGLVAIGTYFTMYGIVLGTIYISIENGLISKNRNVRSNKDTTTDFDVVSTTNKMIALAEDYGLAK-YLDVERVNSKTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPKK 126          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: CCI49673.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 72.0 bits (175), Expect = 3.200e-9
Identity = 38/130 (29.23%), Postives = 69/130 (53.08%), Query Frame = 0
Query:  152 EEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGV----------NPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPAR 272
            + +  + + + + ++YG VA+ TY  +Y   LG ++ ++E+G+                 D      K   + E Y   + +++  + N   G+F +AW+ TKFTEP+R+ +T+ I PRIAR LG+AP +
Sbjct:   56 QSQTHLNRFKDLWRKYGLVAIGTYFTMYGIVLGSIYISIENGLISKNRNTRLNKDTTTNFDVVSTTNKMIALAEDYGLVK-YLDVERVNSKTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPKK 184          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_002185509.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC42996.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.7 bits (169), Expect = 1.600e-8
Identity = 53/159 (33.33%), Postives = 78/159 (49.06%), Query Frame = 0
Query:  120 RNKSTSSRTNRSGNEKSTGEGSAVPGQATPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWL---------VEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAP 270
            R +++  RTN  G+     E +  PGQ+            ++ M ++YG V VVT            F  V+SGV   D     G+L         V+     ++ +S ++P+   +++NP   N AVAWI TKFTEPVR+ V + I P+IAR LG AP
Sbjct:  173 RERASKIRTNARGH---YDEFTEHPGQSA-----RAGAKSVKAMFQQYGPVFVVTXXXXXXXXXXXXFMGVQSGV--LDPASVFGFLGQADETKDTVQLVVDFMQHHSITQPYAHVVESNPTYANLAVAWIATKFTEPVRLAVALPITPKIARYLGYAP 321          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: OQR90543.1 (hypothetical protein THRCLA_22538 [Thraustotheca clavata])

HSP 1 Score: 68.9 bits (167), Expect = 2.700e-8
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 0
Query:  135 KSTGEGSAVPGQATPVVEEEGK---IGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGV------NPFDYG----LDSGWLVEKATGILEGYSWS---EPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARAL 266
            +ST   S V   A+ V + E K    GKL+ + K YG VAV TYL +Y   LG ++A +E+GV       P   G     +S   +  AT  +  ++ S     +++  + N     F VAW+ TKFTEP+R  +T+ I PR+AR L
Sbjct:   16 RSTLNRSLVRRYASNVAQAEEKPAHFGKLKALWKEYGVVAVGTYLSIYGVVLGSMYAAIETGVLSTKKEEPRKEGEPESTESSLNIVTATNKMMDWTNSIGIGQYLDIPEVNSKTSAFLVAWVATKFTEPLRFGLTLMITPRVARLL 162          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: CBJ30264.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.6 bits (166), Expect = 3.500e-8
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 0
Query:  159 KLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSG----------WLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPAR 272
            +L+ + ++YGAV + TY G+Y G++ + +   + GV      L SG          W+ + A    +GY  S+    A+  +  A +F +AW   K  EPVR+L  I I PR+ARALG+APA+
Sbjct:  329 RLQDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLT---SLPSGGTAVIEHMQEWM-KSAPEWAQGY--SDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAK 445          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_002668190.1 (predicted protein [Naegleria gruberi] >EFC35446.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 0
Query:  153 EEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGK 268
            +E    K++  +K+YGA+ +V Y G+Y   LG +F  ++ GV      L   WL   ++G+ +    S+     +  +    N  VAW+LTKFTEP+RM VT+ I P I R L K
Sbjct:  340 QETVFAKIKRFVKQYGALGIVIYFGIYFLVLGTIFLLLQQGVFATKDVLQ--WL--HSSGLDKLIDMSD-----LDKSEMYANAGVAWVLTKFTEPLRMAVTLAITPSIYRLLKK 445          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_002681837.1 (DUF1279 domain-containing protein [Naegleria gruberi] >EFC49093.1 DUF1279 domain-containing protein [Naegleria gruberi])

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 0
Query:  153 EEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGK 268
            +E    K++  +K+YGA+ +V Y G+Y   LG +F  ++ GV      L   WL   ++G+ +    S+     +  +    N  VAW+LTKFTEP+RM VT+ I P I R L K
Sbjct:  179 QETVFAKIKRFVKQYGALGIVIYFGIYFLVLGTIFLLLQQGVFATKDVLQ--WL--HSSGLDKLIDMSD-----LDKSEMYANAGVAWVLTKFTEPLRMAVTLAITPSIYRLLKK 284          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_009524095.1 (hypothetical protein PHYSODRAFT_256309 [Phytophthora sojae] >EGZ21378.1 hypothetical protein PHYSODRAFT_256309 [Phytophthora sojae])

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-7
Identity = 61/201 (30.35%), Postives = 90/201 (44.78%), Query Frame = 0
Query:   82 PRALTRNAASNLPSAVLLRTPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESG---VNPFDYGLDSGWLVEKATGILEGYSWS----------EPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAP 270
            PRAL         S++L  T AR F        S +     S   R + S  + + G+ +A    A P+   E    +L+ + ++YG VA+ TYL +Y   LG ++  ++ G    N        G   E    +     W             ++E  + +   G F +AWI TKFTEPVR+ VT+ I PRIAR LG+AP
Sbjct:   18 PRALFHGLPGLPASSLLSATRARVFVQPPPRARSPTTLLTSSAGRRCSSSVPKAAEGDAAA----AEPMTHME----RLKDLWRKYGVVAIGTYLSMYGVVLGSMYLAIDQGWVRTNKRTNSKGEGQPDESFNLVTTTNKWGFVKFAEDLGVAQYLEVERVSSKTGTFLLAWIATKFTEPVRLAVTLAITPRIARLLGRAP 210          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: OQR80892.1 (hypothetical protein ACHHYP_17084 [Achlya hypogyna])

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-7
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 0
Query:  150 VVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGV-----NPFDYGLDSGWLVEKATGILEG----YSWSE-----PFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIAR 264
            V  +   +G+LR +   YG VAV TYL +Y   LG ++A +E+GV        +   D G   E    IL        W+       +++  + N     F +AW+ TKFTEP+R  VT+ + PR+AR
Sbjct:   54 VTTKASHVGRLRALWNEYGLVAVGTYLSIYGVVLGSMYAAIETGVLSTKKERKEGDADDG---ESPLNILTATNRMMEWTNKIGIGQYLDIPEVNSKTSAFLIAWVATKFTEPLRFAVTLMVTPRVAR 178          
The following BLAST results are available for this feature:
BLAST of NO04G03330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OEU16235.18.400e-1028.21hypothetical protein FRACYDRAFT_238823 [Fragilario... [more]
CCA16393.11.400e-930.40conserved hypothetical protein [Albugo laibachii N... [more]
CCI49673.13.200e-929.23unnamed protein product [Albugo candida][more]
XP_002185509.11.600e-833.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OQR90543.12.700e-835.37hypothetical protein THRCLA_22538 [Thraustotheca c... [more]
CBJ30264.13.500e-834.96conserved unknown protein [Ectocarpus siliculosus][more]
XP_002668190.11.300e-735.65predicted protein [Naegleria gruberi] >EFC35446.1 ... [more]
XP_002681837.11.300e-735.65DUF1279 domain-containing protein [Naegleria grube... [more]
XP_009524095.11.700e-730.35hypothetical protein PHYSODRAFT_256309 [Phytophtho... [more]
OQR80892.11.700e-732.81hypothetical protein ACHHYP_17084 [Achlya hypogyna... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03330.1NO04G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579098gene_2108Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03330.1NO04G03330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03330 ID=NO04G03330|Name=NO04G03330|organism=Nannochloropsis oceanica|type=gene|length=1481bp
AATCTGTGTAGTGCTGTCTTCTCGACCATTACGTCCGAGTCGTGCTCCTC
AGCGGCGAGCGCTCCGGTGCCAGCTACCTTATGTGCCTTTATTTTATGTC
GTACGACGAGATAACCACAGGCATGAGCTACTTTATGACCACGCGAAGGC
CTTCCTCACGCCGCTTGCCTGGGTTGCCTGAGTCAAGCAAATGCAGATTT
GACTTAATTTGTTTTTGAGACACTCTTTTTTTCTCGAATGCGACCTCCTC
ACCCCCTCCTCATCCTCTGGACCACCCTTGACGTAGCTAACTCCCTTTCC
CCTCGGCCCTCCTTAACAGACAGAAGGTCAACATCATGTTGCGAGGCCCG
GGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGC
ACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACC
AAAGTCGCCTTTGCTTCGGGACACACCATCCACCACGTCACTTCATCGTA
AACCCATGTCGTCCCTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACA
GGACGAAAATACTCTTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATG
CGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGT
TTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAA
AAGCACCAGCAGCAGGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAG
AGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGG
AAGATAGGCAAGCTCCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGT
AGTTACGTATTTGGGGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGA
CAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGGCTGGATTCGGGATGG
TTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCC
CTTTGTAGAGGCGATTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGG
CCTGGATCTTGACCAAATTCACCGAGCCTGTGCGCATGCTTGTGACGATT
ACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATG
AGACGAAGATGAGCGGGAAAAATATGCCACATTTGTTTTGTGTTGGATTT
TGCATGGAGGTGGCATGTGAACGCCTAAGGATGTTATTACTCGCATGGAA
ACCAGGGTTAACTGAATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGT
TTGACTTGTGAGGAGAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGA
GACTTCTGAGGGATGCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATT
TCCCTTCTATTACAACGGAAGACGTCGAATAAAATAAATAGAAGTAACCG
AAATTTTCCAGGACAAACAACAAACGACACG
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protein sequence of NO04G03330.1

>NO04G03330.1-protein ID=NO04G03330.1-protein|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MLRGPGCAVGLLRGSGVTGRHAPGSIAWVRPSAAFQYHQSRLCFGTHHPP
RHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLR
TPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPV
VEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYG
LDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVR
MLVTITIVPRIARALGKAPAR*
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Synonyms
Publications