NO04G03240, NO04G03240 (gene) Nannochloropsis oceanica

Overview
NameNO04G03240
Unique NameNO04G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2128
Alignment locationchr4:902298..904425 +

Link to JBrowse

Properties
Property NameValue
DescriptionFe-S cluster assembly factor HCF101, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:902298..904425 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR034904FSCA_dom_sf
IPR027417P-loop_NTPase
IPR010376DUF971
IPR002744DUF59
IPR033756YlxH/NBP35
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
BLAST of NO04G03240 vs. NCBI_GenBank
Match: OQW96769.1 (hypothetical protein BWK77_03675 [Verrucomicrobia bacterium A1])

HSP 1 Score: 388.3 bits (996), Expect = 4.700e-104
Identity = 233/522 (44.64%), Postives = 303/522 (58.05%), Query Frame = 0
Query:  101 TQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRP-ASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNP-GAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGH-KSLFPY 620
            T+ +  LR ++DPDLG D+V+LGF+K L    + G V F LELTTPACP+K+  + Q +  +  LPWV   +V LS+    A RP   A     GL  V+ ++AVSSCKGGVGKST AVNLA+ L   GARVG+ DADI+GPSLPTMV P    V    ++I+P+V           +GVKLMSFGY +P G  AIMRGPMV Q+++QLLT T WGELD+L++DMPPGTGD+ LTL Q + I+AAVIVTTPQ+LSF DVVKG+ MFD + VP VAVVENM++ D                      G++                                           RP FG G R+RL   +G+   V LP+ EE+S   D G P+VL +P+   A  F +L   VVREV++LRH  +   P++TY P   ++       + T GA +V     +SPA LRR C CA+CV+E TG + L P  VPE + P  I  +GNYAV I W+DGH  S++PY
Sbjct:    5 TEALNALRVIIDPDLGRDIVSLGFVKELK-GLDDGRVAFTLELTTPACPIKEQFRTQCVEALRALPWVKSVDVKLSA----AARPHEPATAAGDGLRDVDTILAVSSCKGGVGKSTVAVNLAYTLAGLGARVGLFDADIFGPSLPTMVSPTETEVYARGNRIQPLVY----------EGVKLMSFGYASPQGGPAIMRGPMVSQVLDQLLTQTDWGELDHLVIDMPPGTGDVQLTLMQRVKISAAVIVTTPQKLSFVDVVKGIQMFDKLKVPVVAVVENMSWFDCPG------------------CGTR------------------------------------------HRP-FGSGARERLVHQFGIRTAVDLPIREEISAWSDGGRPVVLAEPDGPAAIAFRELGASVVREVSRLRHG-AATPPAVTYEPGRGILV------APTDGAASV-----VSPALLRRACACALCVDERTGEKTLDPATVPESVVPTRIEPMGNYAVAIHWSDGHTSSIYPY 438          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: EJK67207.1 (hypothetical protein THAOC_11789, partial [Thalassiosira oceanica])

HSP 1 Score: 375.2 bits (962), Expect = 4.100e-100
Identity = 230/503 (45.73%), Postives = 310/503 (61.63%), Query Frame = 0
Query:   83 PVDSVSSSAVASSN---DENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQI 583
            PV  V SSA  S++   D   T   T L     PD   + + +  + NL V  ++  V F LELTTPACPVK++       V+  L W   AEV L+++      P + N+   G+S + +VIAVSSCKGGVGKSTT+VNLAFAL   GARVGI D D+YGPSLPTMV PD + V FV  QI+P+ +            V LMSFGYVN G +A+MRGPMV QL++Q L+LT+WG LDYLILDMPPGTGDI LTL Q LNI AAVIVTTPQ LSF DV +GV+MFDTVNVPCVAVVENMAY +A          +++ +   + +  K  + L   + +   +++       LV  + A + +  +       +FG+GH++RL++ WG+ +T S+P+L +++ +GDSG P +L  P S  A+++  LA  VV EVAK ++  +  RP+++Y  E+H I +         G + V+    +SPA LRR CRCA CVEE+TG QI
Sbjct:  140 PVTRVKSSASTSASLDVDVPATAQATSL-----PDDWQNQILVRVVTNLRV-DDSFIVSFDLELTTPACPVKEEFVKACQDVINSLEWSRGAEVTLTAQEAAPTSPFATNV-PLGMSQIGSVIAVSSCKGGVGKSTTSVNLAFALQSLGARVGIFDVDLYGPSLPTMVTPDDDDVRFVGRQIQPLKR----------NDVALMSFGYVNEG-SAVMRGPMVTQLLDQFLSLTNWGALDYLILDMPPGTGDIQLTLTQKLNIDAAVIVTTPQELSFVDVERGVEMFDTVNVPCVAVVENMAYLEAET--------STEVELDETLLEEKFVEALDGRVSDAQNSSQVQTLAKDLVKLVQANISKENRKGTEEIRIFGKGHKRRLSEQWGIEHTYSVPLLGKIAENGDSGTPFILQNPESPQAEIYAQLAKSVVSEVAKTKYMNTG-RPAVSYDEEKHSIVI-------DDGEKGVS---NISPANLRRACRCASCVEELTGEQI 605          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_017440657.1 (PREDICTED: fe-S cluster assembly factor HCF101, chloroplastic isoform X1 [Vigna angularis] >BAU02828.1 hypothetical protein VIGAN_11241700 [Vigna angularis var. angularis])

HSP 1 Score: 372.1 bits (954), Expect = 3.500e-99
Identity = 231/546 (42.31%), Postives = 304/546 (55.68%), Query Frame = 0
Query:   78 SAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQK----MSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            S   S  D+V  S+V++   E    V+  L +++DPD G+D+VT GF+K+L +    G V F LELTTPACP+KD  + +A  VV  LPWV   +V +S++P    RP  A     GL  ++N++AVSSCKGGVGKST AVNLA+ L   GARVGI DAD+YGPSLPTMV P+  ++  +  + + ++         +  GVKL+SFG+   G  AIMRGPMV  +INQLLT T WGELDYLI+DMPPGTGDI LTLCQ + +TAAVIVTTPQ+LSF DV KGV MF  + VPCVAVVENM + DA                          KR                                          FGRG   ++   +G+ +   LP+   +S SGDSG+P V+  P S  +++F +L   VV++ AK+   R ++  ++TY      I VK+             P  K    + PA +RR  R A  V+E TG Q L+  DVPE+I+PVEI  +GNYAV ITW DG   + PY
Sbjct:   62 SRAASVEDAVGDSSVSTGTAEG--DVLKALSQIIDPDFGTDIVTCGFVKDLQIDEACGEVSFRLELTTPACPIKDMFEQKANEVVAMLPWVKNVQVTMSAQPA---RPIYAEQLPAGLQTISNIVAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADVYGPSLPTMVSPENRLL-LMNPEKKTIIPT-------EYSGVKLVSFGFAGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLIIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADG------------------------KRYYP---------------------------------------FGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGIPEVVADPQSEVSKIFQNLGVCVVQQCAKI---RQQVSTAVTYDKSIKAIKVKV-------------PDSKEEFFLHPATVRRNDRSAQSVDEWTGEQKLQYNDVPEDIEPVEIRPMGNYAVSITWPDGFSQIAPY 514          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_007152802.1 (hypothetical protein PHAVU_004G160900g [Phaseolus vulgaris] >ESW24796.1 hypothetical protein PHAVU_004G160900g [Phaseolus vulgaris])

HSP 1 Score: 371.7 bits (953), Expect = 4.600e-99
Identity = 235/546 (43.04%), Postives = 302/546 (55.31%), Query Frame = 0
Query:   78 SAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQK----MSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            S   S  D+V  S+V++   E    V+  L +++DPD G+D+VT GF+K+L +    G V F LELTTPACPVKD  + QA  VV  LPWV   +V +S++P    RP  A     GL  ++N++AVSSCKGGVGKST AVNLA+ L   GARVGI DAD+YGPSLPTMV P+  V+      +   VK T +    +  GVKL+SFG+   G  AIMRGPMV  +INQLLT T WGELDYLI+DMPPGTGDI LTLCQ + +TAAVIVTTPQ+LSF DV KGV MF  + VPCVAVVENM + DA                          KR                                          FGRG   ++   +G+ +   LP+   +S SGDSG+P V+  P    +++F +L   VV++ AK+   R ++  ++TY      I VK+             P  K    + PA +RR  R A  V+E TG Q L+  DVPE+I+P EI  +GNYAV ITW DG   + PY
Sbjct:   62 SRAASVEDAVGDSSVSTGTAEG--DVLKALSQIIDPDFGTDIVTCGFVKDLQIDKALGEVSFRLELTTPACPVKDMFEQQANEVVAMLPWVKNVKVTMSAQPA---RPIYAEQLPAGLQTISNIVAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADVYGPSLPTMVSPENRVL------LMDPVKKTIIPT--EYSGVKLVSFGFAGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLIIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADG------------------------KRYYP---------------------------------------FGRGSGSQVVQQFGIPHLFDLPIRPNLSASGDSGMPEVVADPQGEVSKIFQNLGVCVVQQCAKI---RQQVSTAVTYDKTIKAIKVKV-------------PDSKEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYNDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPY 514          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_011078358.1 (fe-S cluster assembly factor HCF101, chloroplastic [Sesamum indicum])

HSP 1 Score: 371.7 bits (953), Expect = 4.600e-99
Identity = 230/530 (43.40%), Postives = 299/530 (56.42%), Query Frame = 0
Query:   90 SAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            S VAS   E  T V+  L +++DPD G+D+V+ GF+K+L V+ E+G V F LELTTPACPVKD  + +A  VV  LPWV   +V +S++P    RP  A     GL  ++NV+AVSSCKGGVGKST AVNLA+ L   GARVGI DAD+YGPSLPTMV P+  ++E +  + R ++         +  GVKL+SFG+   G  AIMRGPMV  +INQLLT T WGELDYL++DMPPGTGDI LTLCQ + ++AAVIVTTPQ+L+F DV KGV MF  + VPCVAVVENM + DA                          KR                                          FGRG   ++   +G+ +   LP+   +S SGDSGVP V+  P    A+ F DL   VV++ AK+   R ++  ++TY      I VK+    +            + PA +RR  R A  V+E TG Q L+  D+PE+I+P EI  +GNYAV ITW DG   + PY
Sbjct:  117 SEVASGTAE--TDVLKALSQIIDPDFGTDIVSCGFVKDLKVSEESGEVSFRLELTTPACPVKDMFEKKAHEVVAALPWVETVKVTMSAQPA---RPVFAGELPAGLQTISNVVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE-MNPEKRTIIPT-------EYMGVKLVSFGFAGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLSAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCHFDADG------------------------KRYYP---------------------------------------FGRGSGSQVVQEFGIPHLFELPIRPTLSASGDSGVPEVVADPQGEVARAFQDLGVCVVQQCAKI---RQQVSTAVTYDKSMKAIRVKVPESDE---------EFFLHPATVRRNDRSAESVDEWTGEQKLQYADIPEDIEPEEIRPMGNYAVSITWPDGFNQIAPY 557          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: GAQ77666.1 (hcf101 high-chlorophyll-fluorescence 101 [Klebsormidium nitens])

HSP 1 Score: 370.9 bits (951), Expect = 7.800e-99
Identity = 223/535 (41.68%), Postives = 304/535 (56.82%), Query Frame = 0
Query:   88 SSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQP---KGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            S+ A   ++ E   +V+ +L +++DPD G+D+V+ GF+K + +   TG V F L+LTTPACPVKD  ++QA  +V +LPWV    + ++++   A RP +      GL  V N+IAVSSCKGGVGKST +VNLA+AL   GARVGI DAD+YGPSLPTMV P+  V++         +++ G D    P   +GVKL+SFGY   G +AIMRGPMV  ++NQLLT T WGELDYL+LD PPGTGDI LTLCQ++ ITAAVIVTTPQ+LSF DVVKGV MF  + VPC+AVVENM Y                                                                +AD      FG+G  Q++ D +G+ +   +P+  E+S SGD+G P V+ +P    A+ F +L   VV++ A+L   R ++  ++ Y P    I V+  G  +            +SPA +RR  R A  V+E TG+Q+L+  DV E+I P  I  +GNYAV I+W DG   + PY
Sbjct:   94 SNGAAMGASPEQ--EVLGKLSQIIDPDFGTDIVSCGFVKEMQIDPNTGVVSFTLQLTTPACPVKDMFESQARELVSQLPWVKDLSIKMTAQ---APRPMTDEDVPPGLRKVANIIAVSSCKGGVGKSTVSVNLAYALHGMGARVGIFDADVYGPSLPTMVSPEVPVLQ---------MRVEGDDRIIMPTEYEGVKLVSFGYAGQG-SAIMRGPMVSGVVNQLLTTTDWGELDYLVLDFPPGTGDIQLTLCQAVPITAAVIVTTPQKLSFIDVVKGVRMFAKLKVPCIAVVENMCY---------------------------------------------------------------FEADGKRYFPFGQGSGQKVVDQFGIASLFQMPIKPELSASGDTGKPQVIVEPAGEVARAFSELGASVVQQTARL---RQQVATAVVYDPARKAIVVRPPGSDE---------EFLLSPALVRRNDRSAKSVDEWTGQQLLQYSDVAEDIVPESIRPMGNYAVAISWPDGLTQVAPY 538          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_014515668.1 (fe-S cluster assembly factor HCF101, chloroplastic isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 370.5 bits (950), Expect = 1.000e-98
Identity = 231/546 (42.31%), Postives = 304/546 (55.68%), Query Frame = 0
Query:   78 SAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQK----MSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            S   S  D+V  S+V++   E    V+  L +++DPD G+D+VT GF+K+L +   +G V F LELTTPACP+KD  + +A  VV  LPWV   +V +S++P    RP  A     GL  ++N++AVSSCKGGVGKST AVNLA+ L   GARVGI DAD+YGPSLPTMV P+  ++  +  + + ++         +  GVKL+SFG+   G  AIMRGPMV  +INQLLT T WGELDYLI+DMPPGTGDI LTLCQ + +TAAVIVTTPQ+LSF DV KGV MF  + VPCVAVVENM + DA                          KR                                          FGRG   ++   +G+ +   LP+   +S SGDSGVP V+  P S  +++F +L   VV++ AK+   R ++  ++TY      I VK+             P  K    + PA +RR  R A  V+E TG Q L+  DVPE+I+P EI  +GNYAV ITW DG   + PY
Sbjct:   62 SRAASVEDAVGDSSVSTGTAEG--DVLKALSQIIDPDFGTDIVTCGFVKDLQIDEASGEVSFRLELTTPACPIKDMFEQKANEVVAMLPWVKNVKVTMSAQPA---RPIYAEQLPAGLQTISNIVAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADVYGPSLPTMVSPENRLL-LMNPEKKTIIPT-------EYSGVKLVSFGFAGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLIIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADG------------------------KRYYP---------------------------------------FGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGVPEVVADPQSEVSKIFQNLGVCVVQQCAKI---RQQVSTAVTYDKSIKAIKVKV-------------PDSKEEFFLHPATVRRNDRSAQSVDEWTGEQKLQYNDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPY 514          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_015966713.1 (fe-S cluster assembly factor HCF101, chloroplastic isoform X1 [Arachis duranensis])

HSP 1 Score: 370.5 bits (950), Expect = 1.000e-98
Identity = 227/533 (42.59%), Postives = 300/533 (56.29%), Query Frame = 0
Query:   87 VSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            V SS+V++   E+   V+  L +++DPD G+D+VT GF+K+L +    G V F LELTTPACP+KD  + +A  VV  LPWV   +V +S++P    RP  A     GL  ++N++AVSSCKGGVGKST AVNLA+ L   GARVGI DAD+YGPSLPTMV P+  ++E +  + R ++         +  GVKL+SFG+   G  AIMRGPMV  +INQLLT T WGELDYLI+DMPPGTGDI LTLCQ + +TAAVIVTTPQ+LSF DV KGV MF  + VPCVAVVENM + DA                          KR                                          FGRG   ++   +G+ +   +P+   +S SGDSG+P V+  P    +++F DL   VV++ AK+   R ++  ++TY      I VK+    +            + PA +RR  R A  V+E TG Q L+  DVPE+I+P EI  +GNYAV ITW DG   + PY
Sbjct:   76 VGSSSVSTGTPED--DVLKALSQIIDPDFGTDIVTCGFVKDLQIDKALGEVSFRLELTTPACPIKDMFEEKANEVVTNLPWVKNVKVTMSAQPA---RPLFAEQLPAGLQTISNIVAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADVYGPSLPTMVSPENRLLE-MNPEKRTIIPT-------EYLGVKLVSFGFAGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLIIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADG------------------------KRYYP---------------------------------------FGRGSGSQVVQQFGIPHLFDMPIRPTLSASGDSGMPEVVADPQGEASKIFQDLGVCVVQQCAKI---RQQVSTAVTYDRSIKAIKVKVPDSDE---------EFFLHPATVRRNDRSAQSVDEWTGEQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPY 519          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_022842602.1 (fe-S cluster assembly factor HCF101, chloroplastic-like isoform X1 [Olea europaea var. sylvestris] >XP_022842603.1 fe-S cluster assembly factor HCF101, chloroplastic-like isoform X2 [Olea europaea var. sylvestris] >XP_022842604.1 fe-S cluster assembly factor HCF101, chloroplastic-like isoform X3 [Olea europaea var. sylvestris])

HSP 1 Score: 370.5 bits (950), Expect = 1.000e-98
Identity = 232/536 (43.28%), Postives = 295/536 (55.04%), Query Frame = 0
Query:   86 SVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEF--VESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            SV +SA A S+    T V+  L +++DPD G+D+V+ GF+K+L V    G V F LELTTPACP+KD  + QA  VV  LPWV    V +S+RP    RP  A      L  ++NVIAVSSCKGGVGKST AVNLA+ L   GARVGI D+D+YGPSLPTMV P+  ++E    +  I P   L          GVKL+SFG+   G  AIMRGPMV  +INQLLT T WGELDYL++DMPPGTGDI LTLCQ + +TAAVIVTTPQ+L+F DV KGV MF  + VPCVAVVENM + DA                          KR                                          FGRG   ++ + +G+ N   LP+   +S SGDSG+P V+  P    A+ F +L   VV++ AK+     ++  ++TY      I VK+    +            + PA +RR  R A  V+E TG Q L+  DVPE+I+P EI  +GNYAV ITW DG   + PY
Sbjct:   84 SVQASASAVSSQTAETDVLKSLSQIIDPDFGTDIVSCGFVKDLNVNKALGEVSFRLELTTPACPIKDMFEKQANEVVAALPWVKTVSVTMSARPA---RPVYAGNLPEHLQTISNVIAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDSDVYGPSLPTMVSPENRLLEMNPEKQTIIPTEYL----------GVKLVSFGFAGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCHFDADG------------------------KRYYP---------------------------------------FGRGSGSQVVEQFGIPNLFELPIRPTLSASGDSGIPDVVADPQGEVARTFQELGICVVQQCAKI---SQQVSTAVTYDKGMKAIRVKVPDSDE---------EFYLHPATVRRNDRSAQSVDEWTGEQKLQYADVPEDIEPEEIRPMGNYAVSITWADGFSQIAPY 530          
BLAST of NO04G03240 vs. NCBI_GenBank
Match: XP_007152803.1 (hypothetical protein PHAVU_004G160900g [Phaseolus vulgaris] >ESW24797.1 hypothetical protein PHAVU_004G160900g [Phaseolus vulgaris])

HSP 1 Score: 369.4 bits (947), Expect = 2.300e-98
Identity = 234/551 (42.47%), Postives = 306/551 (55.54%), Query Frame = 0
Query:   73 PYATLSAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGAEAVAPPQK----MSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPY 620
            P+  +++  + V+ V  S+V++   E    V+  L +++DPD G+D+VT GF+K+L +    G V F LELTTPACPVKD  + QA  VV  LPWV   +V +S++P    RP  A     GL  ++N++AVSSCKGGVGKST AVNLA+ L   GARVGI DAD+YGPSLPTMV P+  V+      +   VK T +    +  GVKL+SFG+   G  AIMRGPMV  +INQLLT T WGELDYLI+DMPPGTGDI LTLCQ + +TAAVIVTTPQ+LSF DV KGV MF  + VPCVAVVENM + DA                          KR                                          FGRG   ++   +G+ +   LP+   +S SGDSG+P V+  P    +++F +L   VV++ AK+   R ++  ++TY      I VK+             P  K    + PA +RR  R A  V+E TG Q L+  DVPE+I+P EI  +GNYAV ITW DG   + PY
Sbjct:   56 PHKRVTSRAASVE-VGDSSVSTGTAEG--DVLKALSQIIDPDFGTDIVTCGFVKDLQIDKALGEVSFRLELTTPACPVKDMFEQQANEVVAMLPWVKNVKVTMSAQPA---RPIYAEQLPAGLQTISNIVAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADVYGPSLPTMVSPENRVL------LMDPVKKTIIPT--EYSGVKLVSFGFAGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLIIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADG------------------------KRYYP---------------------------------------FGRGSGSQVVQQFGIPHLFDLPIRPNLSASGDSGMPEVVADPQGEVSKIFQNLGVCVVQQCAKI---RQQVSTAVTYDKTIKAIKVKV-------------PDSKEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYNDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPY 512          
The following BLAST results are available for this feature:
BLAST of NO04G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQW96769.14.700e-10444.64hypothetical protein BWK77_03675 [Verrucomicrobia ... [more]
EJK67207.14.100e-10045.73hypothetical protein THAOC_11789, partial [Thalass... [more]
XP_017440657.13.500e-9942.31PREDICTED: fe-S cluster assembly factor HCF101, ch... [more]
XP_007152802.14.600e-9943.04hypothetical protein PHAVU_004G160900g [Phaseolus ... [more]
XP_011078358.14.600e-9943.40fe-S cluster assembly factor HCF101, chloroplastic... [more]
GAQ77666.17.800e-9941.68hcf101 high-chlorophyll-fluorescence 101 [Klebsorm... [more]
XP_014515668.11.000e-9842.31fe-S cluster assembly factor HCF101, chloroplastic... [more]
XP_015966713.11.000e-9842.59fe-S cluster assembly factor HCF101, chloroplastic... [more]
XP_022842602.11.000e-9843.28fe-S cluster assembly factor HCF101, chloroplastic... [more]
XP_007152803.12.300e-9842.47hypothetical protein PHAVU_004G160900g [Phaseolus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009472NSK009472Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03240.1NO04G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579071gene_2099Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g64gene1866Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03240.1NO04G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03240 ID=NO04G03240|Name=NO04G03240|organism=Nannochloropsis oceanica|type=gene|length=2128bp
ACAGCTTCTCGAGGGTGCGAGGTTGCTTCTGGCTACAGGACTCGAAGCGA
CCATCATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATC
ATTATTGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTT
TACGCCGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTAT
CTAGCTTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCG
GTCCTTACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAG
CCCGGTCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGA
ACCTTACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTG
GGGTCGGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGG
GGAGACGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCC
CCGTCAAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTG
CCTTGGGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGC
GGACCGCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGA
ACAACGTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACC
ACGGCCGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGG
CATTTTGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCC
CTGACACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTG
AAGCTGACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCAT
GAGCTTTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCA
TGGTCATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAG
CTGGACTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCT
CACCCTTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCC
CCCAACGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGAC
ACGGTGAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGA
CGCCTCGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGG
GAAGCGCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAG
ATTGAGGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTT
GGTGGACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCG
TCGCCCGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATG
TGGGGCCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAG
ATCGGGCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGC
CCGCTCAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCG
AAGCTTCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCC
TGAAGAGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTG
GGGCGGAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGT
CGGCAGTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGAT
TTTGCGGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGG
CGGTGGGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCT
TTGTTTCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCC
TGCGAAGGAGAGCAGATAGGAATAAGGGAAGAGGAAAGAAGAGCAAAATA
AAGCAGTGCAAGAATAGCAAGTTACTTGTTGTAGGAGAAAGAGTGCGCTG
CCGTCACGATGGTGGTGATGAACAAAATTGATGCCAAATGAAATGAGAAA
AGAAGGAAACGTCTGACAAAGAATGCGA
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protein sequence of NO04G03240.1

>NO04G03240.1-protein ID=NO04G03240.1-protein|Name=NO04G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MKAALRKKDFVPTIIIIVLALLLGAVLQCRAFTPPQQAPMSSTRRPQVSS
FLPPSRRGPSASRSSVLTHTPLPYATLSAEQSPVDSVSSSAVASSNDENL
TQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPV
KDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNN
VIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPD
TEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMV
IQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQ
RLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGS
ASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVA
RPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPA
QVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGA
EAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAV
GNYAVGITWTDGHKSLFPYRSFVDGYDKDMKPAKESR*
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Synonyms
Publications