NO04G03240.1, NO04G03240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03240.1
Unique NameNO04G03240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2128
Alignment locationchr4:902298..904425 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:902298..904425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03240.1 vs.
Match: EWM28719.1 (protein of unknown function, DUF971 [Nannochloropsis gaditana])

HSP 1 Score: 836.3 bits (2159), Expect = 6.500e-239
Identity = 441/605 (72.89%), Postives = 516/605 (85.29%), Query Frame = 0 
Query:   41 SSTRRPQVSSFLPPSRRGPSASR---SSVLTHTPLPYATLSAEQSPVDSVSSSAVASSNDENLTQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPVKDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPDTEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMVIQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGSASTVGSKPWKRLRQEIEEVIKAAEDTKTQAG-LVDELLATVLRRLQADRVARPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPAQVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMH---GYSDTGGAEA-VAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAVGNYAVGITWTDGHKSLFPYRSFVDGYD--KDMKPAKE 636
            SS+ +P  +   P  R  PS S+   +S   H  LP   +SA+++  ++  SS + SS+++N+ QV+TQLR+VMDPDLGSDVVTLGFIKNLT+ G TG V FVLELTTPACPVKDDLKAQA++VVE LPWV+KA+VILS+RPI A++ A  ++KATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGA+VGILDADIYGPSLPTMV PDTE+VEFVESQIRPM++ TG+DA GQPKGVKLMSFGYVNPGAAA+MRGPMVIQLINQLLTLTSWGELDYL++DMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYAD SALD   SR   D   +    G+  W+RLRQ+IE+V++  +  +T  G +VD+L+  V RRL+ DR+ARPLFG+GHRQRLADMWGL NTVSLPVLEEVS+SGDSG PL++ +P+S+ AQ+FMDLAGRVVREVAKLR+DRSRLRPS+TYLP EH+IAV +H   G +D G  E+ ++PPQK++PAALRRQCRCAMCVEEMTGRQ+L+PE + E+IKPVEIGAVGNYA+GITWTDGHKSLFPYRSFVDGYD   D K ++E
Sbjct:   40 SSSNKPTST---PLYRYAPSVSQLFIASTPFHEKLPI--VSADRNLAET--SSVITSSSEKNIAQVVTQLRQVMDPDLGSDVVTLGFIKNLTIDGATGRVSFVLELTTPACPVKDDLKAQAMQVVETLPWVTKADVILSARPITAEKSAGGDMKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGAKVGILDADIYGPSLPTMVAPDTEMVEFVESQIRPMIRQTGLDAEGQPKGVKLMSFGYVNPGAAAVMRGPMVIQLINQLLTLTSWGELDYLVIDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADVSALDYVDSR--EDMNRNGGVAGA--WQRLRQDIEDVLEDEDGIRTGKGAVVDDLITVVQRRLREDRIARPLFGQGHRQRLADMWGLDNTVSLPVLEEVSKSGDSGTPLLVSEPDSSSAQIFMDLAGRVVREVAKLRYDRSRLRPSVTYLPVEHVIAVTLHGAAGLTDDGRMESDISPPQKIAPAALRRQCRCAMCVEEMTGRQLLQPETIAEDIKPVEIGAVGNYAIGITWTDGHKSLFPYRSFVDGYDTRSDRKASEE 633
The following BLAST results are available for this feature:
BLAST of NO04G03240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28719.16.500e-23972.89protein of unknown function, DUF971 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03240NO04G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03240.1NO04G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03240.1.cds1NO04G03240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03240.1 ID=NO04G03240.1|Name=NO04G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp
ACAGCTTCTCGAGGGTGCGAGGTTGCTTCTGGCTACAGGACTCGAAGCGA
CCATCATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATC
ATTATTGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTT
TACGCCGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTAT
CTAGCTTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCG
GTCCTTACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAG
CCCGGTCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGA
ACCTTACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTG
GGGTCGGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGG
GGAGACGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCC
CCGTCAAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTG
CCTTGGGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGC
GGACCGCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGA
ACAACGTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACC
ACGGCCGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGG
CATTTTGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCC
CTGACACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTG
AAGCTGACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCAT
GAGCTTTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCA
TGGTCATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAG
CTGGACTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCT
CACCCTTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCC
CCCAACGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGAC
ACGGTGAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGA
CGCCTCGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGG
GAAGCGCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAG
ATTGAGGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTT
GGTGGACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCG
TCGCCCGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATG
TGGGGCCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAG
ATCGGGCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGC
CCGCTCAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCG
AAGCTTCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCC
TGAAGAGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTG
GGGCGGAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGT
CGGCAGTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGAT
TTTGCGGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGG
CGGTGGGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCT
TTGTTTCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCC
TGCGAAGGAGAGCAGATAGGAATAAGGGAAGAGGAAAGAAGAGCAAAATA
AAGCAGTGCAAGAATAGCAAGTTACTTGTTGTAGGAGAAAGAGTGCGCTG
CCGTCACGATGGTGGTGATGAACAAAATTGATGCCAAATGAAATGAGAAA
AGAAGGAAACGTCTGACAAAGAATGCGA
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protein sequence of NO04G03240.1

>NO04G03240.1-protein ID=NO04G03240.1-protein|Name=NO04G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MKAALRKKDFVPTIIIIVLALLLGAVLQCRAFTPPQQAPMSSTRRPQVSS
FLPPSRRGPSASRSSVLTHTPLPYATLSAEQSPVDSVSSSAVASSNDENL
TQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPV
KDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNN
VIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPD
TEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMV
IQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQ
RLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGS
ASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVA
RPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPA
QVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGA
EAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAV
GNYAVGITWTDGHKSLFPYRSFVDGYDKDMKPAKESR*
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mRNA from alignment at chr4:902298..904425+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03240.1 ID=NO04G03240.1|Name=NO04G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp|location=Sequence derived from alignment at chr4:902298..904425+ (Nannochloropsis oceanica)
ACAGCTTCTCGAGGGTGCGAGGTTGCTTCTGGCTACAGGACTCGAAGCGA
CCATCATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATC
ATTATTGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTT
TACGCCGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTAT
CTAGCTTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCG
GTCCTTACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAG
CCCGGTCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGA
ACCTTACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTG
GGGTCGGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGG
GGAGACGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCC
CCGTCAAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTG
CCTTGGGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGC
GGACCGCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGA
ACAACGTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACC
ACGGCCGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGG
CATTTTGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCC
CTGACACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTG
AAGCTGACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCAT
GAGCTTTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCA
TGGTCATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAG
CTGGACTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCT
CACCCTTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCC
CCCAACGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGAC
ACGGTGAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGA
CGCCTCGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGG
GAAGCGCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAG
ATTGAGGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTT
GGTGGACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCG
TCGCCCGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATG
TGGGGCCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAG
ATCGGGCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGC
CCGCTCAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCG
AAGCTTCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCC
TGAAGAGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTG
GGGCGGAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGT
CGGCAGTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGAT
TTTGCGGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGG
CGGTGGGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCT
TTGTTTCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCC
TGCGAAGGAGAGCAGATAGGAATAAGGGAAGAGGAAAGAAGAGCAAAATA
AAGCAGTGCAAGAATAGCAAGTTACTTGTTGTAGGAGAAAGAGTGCGCTG
CCGTCACGATGGTGGTGATGAACAAAATTGATGCCAAATGAAATGAGAAA
AGAAGGAAACGTCTGACAAAGAATGCGA
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Coding sequence (CDS) from alignment at chr4:902298..904425+

>NO04G03240.1 ID=NO04G03240.1|Name=NO04G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr4:902298..904425+ (Nannochloropsis oceanica)
ATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATCATTAT
TGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTTTACGC
CGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTATCTAGC
TTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCGGTCCT
TACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAGCCCGG
TCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGAACCTT
ACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTGGGGTC
GGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGGGGAGA
CGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCCCCGTC
AAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTGCCTTG
GGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGCGGACC
GCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGAACAAC
GTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACCACGGC
CGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGGCATTT
TGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCCCTGAC
ACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTGAAGCT
GACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCATGAGCT
TTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCATGGTC
ATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAGCTGGA
CTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCTCACCC
TTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCCCCCAA
CGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGACACGGT
GAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGACGCCT
CGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGGGAAGC
GCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAGATTGA
GGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTTGGTGG
ACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCGTCGCC
CGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATGTGGGG
CCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAGATCGG
GCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGCCCGCT
CAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCGAAGCT
TCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCCTGAAG
AGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTGGGGCG
GAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGTCGGCA
GTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGATTTTGC
GGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGGCGGTG
GGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCTTTGTT
TCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCCTGCGA
AGGAGAGCAGATAG
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Synonyms
Publications