NO04G03190, NO04G03190 (gene) Nannochloropsis oceanica

Overview
NameNO04G03190
Unique NameNO04G03190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3223
Alignment locationchr4:873528..876750 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:873528..876750 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026086Pro-rich
Homology
The following BLAST results are available for this feature:
BLAST of NO04G03190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009458NSK009458Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03190.1NO04G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628245gene_2092Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g71gene1860Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03190.1NO04G03190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03190 ID=NO04G03190|Name=NO04G03190|organism=Nannochloropsis oceanica|type=gene|length=3223bp
ATGATCCTGATCCGCCGCGTCACCTTCGGCTCTTTGACACTCCTATTCTG
GACTATCGTCGCGCAAGgtaagttacgatcagatttatgaggctgtaaag
acttaacttgattggtgggaaggtcttagagacaggaatgactggaggag
gggtgaaatacaacttgcctcagacactccctcatctccctcacctcccc
tttcattcactgtagATTCGCCGTACACTCCTCCCCCCTACGGCTCTCAC
CGATGGCTGGCTGAAGAAGgtaataaacatactccatattctaagtcact
tactgacccttcccacctctatctaacactgtatccctccacttctacaa
gGCTGGCCCTATACCTCTTCCACCTACGGATCGCACCGCTGGCTTGCAGA
AAAGGACCCCACGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCCCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCC
GCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGA
AGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCT
GGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGG
TCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCC
CCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGT
ACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACG
GCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGA
GAAGGACCCCGCGAGCCCGTACACGCCCCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCC
GCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGA
AGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCT
GGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGG
TCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCC
CCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGT
ACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACG
GCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGA
GAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCC
GCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGA
AGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCT
GGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGG
TCCCACCGCTGGCTCGCGGATAATGACACGGCAAGCCCTTACACTCCTCC
CCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGT
ACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACG
GCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGA
GAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCGCCAGTGGTTGGCCAAAGACAATATC
GCTACTGTGCCGTATGGAACGACCCAGCCCGTGATGACCGAGCGAGCGCA
CGAGAGCAAAATCGCGCTAGGCGAGCCCTTGTCAACCTACCATACCAAGA
CGCAAACCGTCGCGAGCCTGGAGATCCACGGCGTCAACAACACCGGCCGT
CGGTATCTACGTCGGGGATAAATAAAGAGAATATTGAGGTGGAAGAGAGA
AACCGACTGAAAGCAGATGATGGAGGAAGAGAGAGAAAGAGACGACGTAT
TTGAAAGCCGTGATAGCGAGTAAGTCGATCTTAGTAGATATTGAGTGGAG
TGATTGACCTGGTCGAGAGCCCTACTTTCTGCTTGCTTTCGTCTGGGAGA
GAAAAGGATGAGAGGTCCTGGGAGGCAGGGAATAAGTAAACTTTAAAAAA
AGAGACATCATCCACTATCCAAGCCATCCCCAAAAAATATCATGAAAGAT
ATCCGGGGGATAAAGGGAAGCATTACCTTCCTACATTCCTTTTGCGAAAG
CAAGGGGCTTTTCTATCTATGGAGCACTGGAGGAGTGAAGGAGAGGGAAA
TTGCGACTGGTGGTCGCTCCTTTTTAACCGGTGGTGTGTAAATTGAAATG
CGAATGAAAAAGAGAGAGCTAAAAACAGGAAAGTCGTCCATTTGAAATCC
CATTTTCAGGGAAGCGATGTCTACTCTGCCTCTCGACCCAGGGAAGTGGC
GTCTCGAGAGGGACAGGAAGATATAGCACAAACATAAGCACGTAGAACAA
AACTTACTGAAGTATGAATTACC
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protein sequence of NO04G03190.1

>NO04G03190.1-protein ID=NO04G03190.1-protein|Name=NO04G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=797bp
MILIRRVTFGSLTLLFWTIVAQDSPYTPPPYGSHRWLAEEGWPYTSSTYG
SHRWLAEKDPTSPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDP
ASPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYG
SHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLAEDDT
ASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPYG
SHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDP
ASPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYG
SHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLAEDDT
ASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPYG
SHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDP
ASPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYG
SHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLADNDT
ASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPYG
SHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDP
ASPYTPPPYGSHRWLAEDDTASPYTPPPYGSRQWLAKDNIATVPYGTTQP
VMTERAHESKIALGEPLSTYHTKTQTVASLEIHGVNNTGRRYLRRG*
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Synonyms
Publications