NO04G03160, NO04G03160 (gene) Nannochloropsis oceanica

Overview
NameNO04G03160
Unique NameNO04G03160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr4:864590..865975 +

Link to JBrowse

Properties
Property NameValue
DescriptionQb-vti1-family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:864590..865975 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_002969355.1 (vesicle transport v-SNARE 11 [Selaginella moellendorffii] >XP_024531552.1 vesicle transport v-SNARE 11 [Selaginella moellendorffii] >EFJ28012.1 hypothetical protein SELMODRAFT_270868 [Selaginella moellendorffii] >EFJ29443.1 hypothetical protein SELMODRAFT_146421 [Selaginella moellendorffii])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 48/190 (25.26%), Postives = 101/190 (53.16%), Query Frame = 0
Query:   35 CSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSF---GSAKAIAEKRILIQQAPGS--------GKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIV 214
            CS T  ++     + LAE+   L EA+  ++ +E+E R +    K ++  K+ ++++DL +L++      +  A+A +  L++   G         G+L  AT+++ RS E++ ++KR + ETED+G  I+  +  QR++L+   + +   +     +R+++N+M  R  ++K  +  +I F    I +V
Sbjct:   23 CSATAILSGEEKKQKLAELKSGLDEAQSLIQRMELEARSLGNSQKAVFLAKLREYKSDLTSLKKDVQKCATTDALAAREELLEAGLGDLSTSTDQRGRLLYATDKMNRSGERIKESKRTLLETEDLGVSILQDLHDQRQRLLHTRDTLYGVDDNVGKSRKILNSMARRINQNKWIMGGLISFLIAAILLV 212          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_008620752.1 (hypothetical protein SDRG_16326 [Saprolegnia diclina VS20] >EQC25810.1 hypothetical protein SDRG_16326 [Saprolegnia diclina VS20])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 52/215 (24.19%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    9 EEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVFNYGVLARYR 224
            +EEY  L+++I+  I E+ S Y           AP      +  +   + +A   ++ +++E+R ++A  K+    K+ Q++  L +L       +   E+  L   A    +++GAT++L ++ ++++ A + V ETE+   GI  ++   RE++     KV+  N   R+  +++N M  R  R K  L  ++ F  + I IV    +  R R
Sbjct:    9 DEEYKSLAQSISVKISEI-SSYED---------APDKKRTAITHVGDLITQATQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKRIREKEEENGLFGSAEARARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIESTHNKVKSVNDMARAGGRILNRMSARDKRQKLILYGVMGFMILAILIVLFSTIFGRRR 213          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: ETI52902.1 (hypothetical protein F443_04061 [Phytophthora parasitica P1569] >ETL46178.1 hypothetical protein L916_03886 [Phytophthora parasitica] >ETM52467.1 hypothetical protein L914_03905 [Phytophthora parasitica] >ETO81605.1 hypothetical protein F444_04116 [Phytophthora parasitica P1976] >ETP22711.1 hypothetical protein F441_04040 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 50/158 (31.65%), Postives = 85/158 (53.80%), Query Frame = 0
Query:   57 LAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEK----RILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILI 211
            + EA+  +K + VE+R    + +K  + K++ +R++L  L R    A+ +A +         Q     +L    +RL +S+++L D  R+V ETE+VG  +++ + SQRE L+ A EKV+ET   T  AR+++  M  R I +   L   I   F+LI
Sbjct:   49 VVEAQRCMKLMTVEVRGRQPMLRKAMQAKVNMYRDELQGLIRDLERAQLMAREGKATSSTANQTSQYERLIKNNDRLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTI---FVLI 203          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_008901268.1 (hypothetical protein PPTG_08103 [Phytophthora parasitica INRA-310] >ETK92762.1 hypothetical protein L915_03943 [Phytophthora parasitica] >ETL99323.1 hypothetical protein L917_03801 [Phytophthora parasitica] >ETN13195.1 hypothetical protein PPTG_08103 [Phytophthora parasitica INRA-310] >ETP50688.1 hypothetical protein F442_04045 [Phytophthora parasitica P10297] >KUF98241.1 Vesicle transport v-SNARE 13 [Phytophthora nicotianae])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 50/158 (31.65%), Postives = 85/158 (53.80%), Query Frame = 0
Query:   57 LAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEK----RILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILI 211
            + EA+  +K + VE+R    + +K  + K++ +R++L  L R    A+ +A +         Q     +L    +RL +S+++L D  R+V ETE+VG  +++ + SQRE L+ A EKV+ET   T  AR+++  M  R I +   L   I   F+LI
Sbjct:   49 VVEAQRCMKLMTVEVRGRQPMLRKAMQAKVNMYRDELQGLIRDLERAQLMAREGKATSSTANQTSQYERLIKNNDRLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTI---FVLI 203          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: OQR92341.1 (hypothetical protein ACHHYP_03823 [Achlya hypogyna])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 52/215 (24.19%), Postives = 106/215 (49.30%), Query Frame = 0
Query:    9 EEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVFNYGVLARYR 224
            +EEY  L+++I+  I E+    SS   +P         + I    D+ + +A   ++ +++E+R ++A  K+    K+ Q++  L +L     + +   E+  L   A    +++GAT++L ++ ++++ A + V ETE+   GI  ++   RE++     K++  N   R+  +++N M  R  R K  L  ++ F  + I IV    +  R R
Sbjct:    9 DEEYKSLAQSISTKISEI----SSYEDAPAQKEIDKKRTAITHVGDL-ITQATQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKTIREKEEQAGLFGSAEARARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIEATHSKIKSVNDMARAGGRILNRMSARDKRQKLILYGVMGFMILAIFIVLLSTIFGRRR 218          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_008901269.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETI52903.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK92763.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL46179.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL99324.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM52468.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN13196.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETO81606.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP22712.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP50689.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-7
Identity = 49/152 (32.24%), Postives = 82/152 (53.95%), Query Frame = 0
Query:   63 QVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEK----RILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILI 211
            Q+K + VE+R    + +K  + K++ +R++L  L R    A+ +A +         Q     +L    +RL +S+++L D  R+V ETE+VG  +++ + SQRE L+ A EKV+ET   T  AR+++  M  R I +   L   I   F+LI
Sbjct:   26 QMKLMTVEVRGRQPMLRKAMQAKVNMYRDELQGLIRDLERAQLMAREGKATSSTANQTSQYERLIKNNDRLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTI---FVLI 174          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_012206699.1 (hypothetical protein SPRG_12563 [Saprolegnia parasitica CBS 223.65] >KDO22583.1 hypothetical protein SPRG_12563 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-7
Identity = 52/215 (24.19%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    9 EEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVFNYGVLARYR 224
            +EEY  L+++I+  I E+ S Y           AP      +  +   + +A   ++ +++E+R ++A  K+    K+ Q++  L +L       +   E+  L   A    +++GAT++L ++ ++++ A + V ETE+   GI  ++   RE++     KV+  N   R+  +++N M  R  R K  L  ++ F  + I IV    +  R R
Sbjct:    9 DEEYKSLAQSISIKISEI-SSYED---------APDKKRTAITHVGDLITQATQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKRIREKEEENGLFGSAEARARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIEATHHKVKSVNDMARAGGRILNRMSARDKRQKLILYGVMGFMILAILIVLFSTIFGRRR 213          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: KXZ49317.1 (hypothetical protein GPECTOR_22g911 [Gonium pectorale])

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-7
Identity = 55/210 (26.19%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   26 LGSKYSSVTCSPTPAMA-----PSTLS-----RILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAK--------AIAEKRILIQQAPGS----GKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIV 214
            L S+Y +  C+ +  ++      STLS     + L+E+D+D+ EA+  +K +++E R +     +  ++K+ +++ DL +L+     A+        A AE  + +  A  S     ++   T +L +S E+L   K+++ ETE++G GI+  + +QRE ++ + + +   +     AR++++NM    +++K  LILI V  F+L  I+
Sbjct:    7 LFSQYENEYCNKSTDISRKINTASTLSGDARRKKLSEVDVDIREADNIIKKMDMEARSVAPERSRNLQNKVKEYKADLASLKEQLTKARSTAGDFESARAELGLGMDYASSSQAQRDRMLSGTAKLEQSNERLQTGKKLLAETEELGTGILANLAAQRETIIHSRDTLHGADDNISKARKILSNMSRVMLQNK--LILIGVIAFLLTAII 214          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_024579568.1 (kinesin-like protein [Plasmopara halstedii] >CEG43199.1 kinesin-like protein [Plasmopara halstedii])

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-7
Identity = 45/147 (30.61%), Postives = 78/147 (53.06%), Query Frame = 0
Query:   57 LAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILI----QQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACL 200
            + EA+  +K + VE R      ++  + KI+ +R++L  L R    A  +A +   I     +     +L    +RL++S++ L D  R+V ETE+VG  +++ + SQR+ L+ A EKV+ET   T  AR+++  M  R I +   L
Sbjct:  181 VVEAQRSIKLMTVEARGRQPQLRRSMQTKINMYRDELQGLVRDLERALLMAREGKSISSNTNETSQYERLSKNNDRLIKSSKTLEDTHRIVAETEEVGIAVLDSLASQRQSLLGAQEKVRETGAMTIEARRILQRMTRRIITNTISL 327          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_012211747.1 (hypothetical protein SPRG_17029 [Saprolegnia parasitica CBS 223.65] >KDO17546.1 hypothetical protein SPRG_17029 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7
Identity = 52/215 (24.19%), Postives = 102/215 (47.44%), Query Frame = 0
Query:    9 EEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVFNYGVLARYR 224
            +EEY  L+++I+  I E+ S Y           AP      +  +     +A   ++ +++E+R ++A  K+    K+ Q++  L +L       +   E+  L   A    +++GAT++L ++ ++++ A + V ETE+   GI  ++   RE++     KV+  N   R+  +++N M  R  R K  L  ++ F  + I IV    +  R R
Sbjct:    9 DEEYKSLAQSISIKISEI-SSYED---------APDKKRTAITHVGDLTTQATQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKRIREKEEENGLFGSAEARARMQGATQKLKQTGDRISAAHQTVLETEETAIGIQEELSRNREKIEATHHKVKSVNDMARAGGRILNRMSARDKRQKLILYGVMGFMILAILIVLFSTIFGRRR 213          
The following BLAST results are available for this feature:
BLAST of NO04G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002969355.11.900e-725.26vesicle transport v-SNARE 11 [Selaginella moellend... [more]
XP_008620752.11.900e-724.19hypothetical protein SDRG_16326 [Saprolegnia dicli... [more]
ETI52902.11.900e-731.65hypothetical protein F443_04061 [Phytophthora para... [more]
XP_008901268.11.900e-731.65hypothetical protein PPTG_08103 [Phytophthora para... [more]
OQR92341.11.900e-724.19hypothetical protein ACHHYP_03823 [Achlya hypogyna... [more]
XP_008901269.12.500e-732.24hypothetical protein, variant 1 [Phytophthora para... [more]
XP_012206699.12.500e-724.19hypothetical protein SPRG_12563 [Saprolegnia paras... [more]
KXZ49317.12.500e-726.19hypothetical protein GPECTOR_22g911 [Gonium pector... [more]
XP_024579568.13.200e-730.61kinesin-like protein [Plasmopara halstedii] >CEG43... [more]
XP_012211747.15.500e-724.19hypothetical protein SPRG_17029 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009453NSK009453Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03160.1NO04G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579024gene_2089Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SNR17gene1856Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03160.1NO04G03160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03160 ID=NO04G03160|Name=NO04G03160|organism=Nannochloropsis oceanica|type=gene|length=1386bp
ATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCG
CGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCA
CTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTA
GCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACAGgtgagttttct
tatcgagatcatggggagtaagtcgtaccacatccgctcctgcagcgcaa
caaaaaagagggaggtggccttaatggccggaaaggccatcttcatcaaa
caccgcaggtgcatcctggaggagagagacgaggagggtgcggctggaaa
tccactccgtcatgccccctccaccaccatgtcacacgacagGTCAAAGC
CTTGGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATC
GAGACAAGgtaaaagagtatggggtgggttcgaacaaagagggtcaacgg
gggttatggaggatctttcaaagagtttcattgtgtcgttttggtacccc
gaggtcattgccaccctcaggactgatcaacaagaacagcacctgactcc
tccacctgttactctctcgttgattagATTTCCCAGTTTCGCAACGACTT
GTGCGCTCTCCGGCGGAGCTTCGGAAGTGCCAAAGCCATTGCTGAGAAGC
GCATCCTAATCCAGCAAGCACCGGGCAGCGGCAAGCTGAAGGGTGCCACG
GAGCGTCTGATGCGgtacgtaaatgcttcgagataacatttatcccaaga
gaaaaggaagggataaggttcttcggcagtgtccgttcacgagaaaaaac
tattttttgtgcggcacgccgcttgcgcgttgtcccactcttttactgcc
ctcacatagGTCCACGGAGCAGCTAAACGATGCCAAACGGATGGTAGGCG
AGACAGAGGATGTTGgtaagaaaacaatgggagtttaggacatgagaaaa
gctagatgcgtcaacctcactgtcacacgacccgttatacgcgcacgcac
ataaagGCGATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTG
GTGCGGGCTTCCGAAAAGgtatgcattgaaaatggaatattggttttctc
gtaggcctttttcaaagatttacatatgccattgtatatcttccctcttc
tcgcctcaaatccagGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAG
ACAAGTGATGAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTC
TCATCCTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAAC
TATGGCGTGTTGGCAAGGTACCGGAAGAATGATTGA
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protein sequence of NO04G03160.1

>NO04G03160.1-protein ID=NO04G03160.1-protein|Name=NO04G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MEDAHKHMEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRIL
AEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSF
GSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVG
DGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLI
LIIVFQFILIGIVFNYGVLARYRKND*
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Synonyms
Publications