NO04G02970, NO04G02970 (gene) Nannochloropsis oceanica

Overview
NameNO04G02970
Unique NameNO04G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1170
Alignment locationchr4:789908..791077 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlutathione s-transferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:789908..791077 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR036282Glutathione-S-Trfase_C_sf
IPR036249Thioredoxin-like_sf
IPR010987Glutathione-S-Trfase_C-like
IPR004045Glutathione_S-Trfase_N
Homology
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BLAST of NO04G02970 vs. NCBI_GenBank
Match: EWM28805.1 (glutathione s-transferase [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 1.100e-87
Identity = 179/284 (63.03%), Postives = 215/284 (75.70%), Query Frame = 0 
Query:    7 RPGLSCLIVATLMSSTATAF--KQPPHLALSCRLSPCPRPIGVTGRGTVAFHRAKFVYPRHLPSGWTVAFASADGPSSSPAKTPPPA-GYKPKLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGAPPPSTA 288
            R GL+  ++ T  S   +AF   QPP L          RP+   GR        +   P++  + ++ AFA+AD  +++    PP + GYKPK+WAYYRSRSKIIEWY QELGV Y+ VQ+DMGA  HK   F+++VNPFGKLPVITMA+G+PLIESG+QLLYLADVFDP+V+TAEERG+ASQWTHFANASLGP+IFMKEQR+AGVMDKLFAVL++ LA  SYLQGERF V DVAVGSYLSYIPVFFP QI L+ Y  L+AYI R+T+RPAFK TVGAPPPSTA
Sbjct:   10 RCGLAVALL-TCGSFLTSAFPGSQPPTLP--------ARPL--AGRRPTFLSPRRSYRPQYTRTTFSSAFAAAD--NAALRNIPPSSHGYKPKVWAYYRSRSKIIEWYCQELGVDYEAVQVDMGAGQHKASDFVKNVNPFGKLPVITMADGTPLIESGAQLLYLADVFDPNVSTAEERGLASQWTHFANASLGPSIFMKEQREAGVMDKLFAVLNELLAESSYLQGERFGVGDVAVGSYLSYIPVFFPDQISLDAYPFLRAYINRITSRPAFKRTVGAPPPSTA 280
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BLAST of NO04G02970 vs. NCBI_GenBank
Match: XP_005854977.1 (glutathione S-transferase [Nannochloropsis gaditana CCMP526] >EKU21388.1 glutathione S-transferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.8 bits (673), Expect = 6.000e-67
Identity = 128/162 (79.01%), Postives = 145/162 (89.51%), Query Frame = 0 
Query:  126 MGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGAPPPSTA 288
            MGA  HK   F+++VNPFGKLPVITMA+G+PLIESG+QLLYLADVFDP+V+TAEERG+ASQWTHFANASLGP+IFMKEQR+AGVMDKLFAVL++ LA  SYLQGERF V DVAVGSYLSYIPVFFP QI L+ Y  L+AYI R+T+RPAFK TVGAPPPSTA
Sbjct:    1 MGAGQHKASDFVKNVNPFGKLPVITMADGTPLIESGAQLLYLADVFDPNVSTAEERGLASQWTHFANASLGPSIFMKEQREAGVMDKLFAVLNELLAESSYLQGERFGVGDVAVGSYLSYIPVFFPDQISLDAYPFLRAYINRITSRPAFKRTVGAPPPSTA 162
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BLAST of NO04G02970 vs. NCBI_GenBank
Match: WP_035996567.1 (glutathione S-transferase family protein [[Leptolyngbya] sp. JSC-1])

HSP 1 Score: 159.5 bits (402), Expect = 1.600e-35
Identity = 86/186 (46.24%), Postives = 123/186 (66.13%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGA 282
            KL+   RSR+ I+ WY++ELG+ Y+ V +DM A  H+ P ++  +NP GK+P I + +   L ESG+ LLYLA+ +   + T E+R  A+QW  FANA+LGP IF++  R+   M +LF  L++ L  + YLQGE F+V D AVGS L+Y+P+    QI  E Y  LQAY+ R+T RPAF+ T+GA
Sbjct:    3 KLYGGARSRASIVRWYLEELGIPYEYVVLDMAAGEHRQPEYLA-INPMGKVPAI-VDSDFRLWESGAILLYLAEKYGAPM-TLEQRAEANQWILFANATLGPGIFVEASREK-EMPRLFGPLNERLQQQPYLQGEEFTVVDAAVGSMLAYMPLML--QINFEGYPALQAYVKRLTERPAFQKTIGA 182
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BLAST of NO04G02970 vs. NCBI_GenBank
Match: WP_027844554.1 (glutathione S-transferase family protein [Mastigocoleus testarum] >KST67441.1 glutathione S-transferase [Mastigocoleus testarum BC008])

HSP 1 Score: 159.1 bits (401), Expect = 2.100e-35
Identity = 82/186 (44.09%), Postives = 121/186 (65.05%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGA 282
            KL+   RSR+ I++WY++EL + Y+ V +DM +  H+ P +++ +NP GK+P I +     L ESG+ LLYLAD +D   T+AE+R   SQW  FANASLGP IF++  R+   M +L   L++  A + ++ G  F+V+D AVGS LSYIP+    ++ L  Y H+  YI  ++ RPAFKNT+GA
Sbjct:    3 KLYGAARSRASIVKWYLEELEIPYEFVNLDMQSGEHRQPEYLK-INPIGKVPAI-VDGDLKLWESGAILLYLADKYDKSATSAEKRAEYSQWVLFANASLGPGIFIEANRER-EMSRLMTPLEEIFAKQPFVLGNEFTVADAAVGSLLSYIPIML--KLDLSEYPHVLNYIKSISERPAFKNTIGA 183
[Close]
BLAST of NO04G02970 vs. NCBI_GenBank
Match: WP_088891889.1 (glutathione S-transferase family protein [Leptolyngbya ohadii])

HSP 1 Score: 159.1 bits (401), Expect = 2.100e-35
Identity = 83/185 (44.86%), Postives = 122/185 (65.95%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVG 281
            KL+   RSR+ I++WY++ELGV Y+ V +DM A  HK+P F+  +NPFGK+P I   NG  L ESG+ LLYL++ +D  ++T E+R   +QW  FANA+LGP IF++  R+   M +L A L+Q    + +L GE+FS +DVAVGS L+Y+P+    +I  E Y  +  Y+ R+  RP F+ T+G
Sbjct:    3 KLYGGARSRASIVQWYLEELGVPYEYVLLDMQAGQHKEPDFLA-INPFGKVPAIE-ENGYRLWESGAILLYLSEKYDTAISTPEQRATIAQWVLFANATLGPGIFVEASRER-EMPRLLAPLNQIFEQQPFLLGEQFSAADVAVGSMLAYMPLML--KIGFEDYPGIADYLKRIAERPGFQKTLG 182
[Close]
BLAST of NO04G02970 vs. NCBI_GenBank
Match: WP_011242609.1 (MULTISPECIES: glutathione S-transferase family protein [Synechococcus] >BAD78485.1 glutathione S-transferase [Synechococcus elongatus PCC 6301] >ABB57286.1 glutathione S-transferase [Synechococcus elongatus PCC 7942] >AJD58201.1 glutathione S-transferase [Synechococcus sp. UTEX 2973])

HSP 1 Score: 159.1 bits (401), Expect = 2.100e-35
Identity = 82/185 (44.32%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVG 281
            KL+   R+R+ ++ WY++ELG  Y+ V +DM A  H+ P F+  +NPFGK+P + + +   L ESG+ LLYLA+ F  ++ T ++R +A+QW  FANA+LGP +F++  R A    +L   L+  L+ + YL  +R SVSDVAVGSYL+Y+P+FFP    L PY  +Q YI R+T RPA++ ++G
Sbjct:    3 KLYGSARTRASLVAWYLEELGQPYESVAVDMAAGEHRQPTFL-SLNPFGKVPAL-VDDAFTLWESGAILLYLAEKFG-ELQTPQDRAIAAQWVLFANATLGPGLFVEANR-AKEAPRLLGSLNTLLSQREYLVSDRLSVSDVAVGSYLAYVPMFFP-DFDLSPYPAVQDYIRRLTQRPAYQQSIG 182
[Close]
BLAST of NO04G02970 vs. NCBI_GenBank
Match: WP_088243699.1 (glutathione S-transferase family protein [Calothrix rhizosoleniae])

HSP 1 Score: 158.7 bits (400), Expect = 2.700e-35
Identity = 83/186 (44.62%), Postives = 125/186 (67.20%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGA 282
            KL+   RSR+ II+WY++EL V Y+ +Q+DM A  H+  +F+  +NP GK+P I +     L ESG+ LLYLAD +   V+++EER   +QW+ FANA+LGP +F++  R+   M +L A LD+  + + +L G+ FSV+DVAVGSYL+YIP+    ++ L  Y H+  Y+ R+  RPAF+ T+GA
Sbjct:    3 KLYGGARSRASIIQWYLEELAVPYEYIQLDMEAGEHRQQIFL-GINPMGKVPAI-VDGELKLWESGAILLYLADKYG-GVSSSEERAQGAQWSLFANATLGPGVFVEASRER-EMPRLMAPLDEIFSKQPFLLGDSFSVADVAVGSYLNYIPILL--KLDLSDYPHVMKYMQRIAERPAFQKTIGA 182
[Close]
BLAST of NO04G02970 vs. NCBI_GenBank
Match: WP_106170533.1 (glutathione S-transferase family protein [filamentous cyanobacterium CCP2] >PSB22708.1 glutathione S-transferase [filamentous cyanobacterium CCP2] >PSB68496.1 glutathione S-transferase [filamentous cyanobacterium CCP1])

HSP 1 Score: 157.5 bits (397), Expect = 6.100e-35
Identity = 77/186 (41.40%), Postives = 125/186 (67.20%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGA 282
            KL+   R+R+ I++WY++ELG  Y+ + +++ A  H+ P ++  +NP GK+P I +     L ESG+ LLYLAD +D  V T E+RG  +QW  FANA+ GP +F++  R+   M +L  +L+Q L ++S++ G+RFSV+DVAVGS+++Y+P+    +I  + Y  + AY+ R+  RPAF+ T+GA
Sbjct:    3 KLYGGARTRASIVQWYLEELGRPYEYISLNLQAGDHRQPDYLA-INPVGKVPAI-VDGDLKLWESGAILLYLADKYDATVETVEQRGELAQWVLFANATFGPGVFVEANRER-EMPRLLTMLNQHLETRSFILGDRFSVADVAVGSFIAYMPIML--KIGFDDYPAISAYLKRLMERPAFQKTIGA 183
[Close]
BLAST of NO04G02970 vs. NCBI_GenBank
Match: XP_013906246.1 (glutathione S-transferase [Monoraphidium neglectum] >KIZ07227.1 glutathione S-transferase [Monoraphidium neglectum])

HSP 1 Score: 156.4 bits (394), Expect = 1.400e-34
Identity = 86/189 (45.50%), Postives = 125/189 (66.14%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFD--PDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGAP 283
            KL+    SR +I+ WY+ ELGV  + V +D  A  HK P +  D  PFG +P I   +   L ESG+ LLYLA+ F     VTT E+R +A+QW  FANA+L P +F++  RD   + K+F+ LD+ LA + YL+G +FSV+D+AVG+YL+Y+P+F P Q+ L P+ ++ AYI R++ RP+FK T G+P
Sbjct:    2 KLYTNPASRGQIVSWYLHELGVQAEEVILDFKAGEHKAPGY-TDKFPFGLVPSIEDGD-LRLFESGAILLYLAERFPEASGVTTTEQRALAAQWVLFANATLAPVMFIESVRDT-TLPKVFSPLDKVLADREYLEGGKFSVADLAVGAYLTYMPMFLP-QVDLSPWPNVVAYINRISERPSFKATSGSP 186
[Close]
BLAST of NO04G02970 vs. NCBI_GenBank
Match: WP_015127712.1 (glutathione S-transferase family protein [Calothrix sp. PCC 7507] >AFY31892.1 Glutathione S-transferase domain protein [Calothrix sp. PCC 7507])

HSP 1 Score: 154.8 bits (390), Expect = 3.900e-34
Identity = 82/185 (44.32%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:   96 KLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVG 281
            KL+   RSR+ I++WY++ELGV Y+ V++DM A  H+ P ++  +NP GK+P I +     L ESG+ LLYLAD +  + T+ EER +A+QWT FANA+LGP IF +  R+   M +L A L++  A + +L G+ F+V+DVAVGS L+YIP+    ++ L  Y  +  Y+ RV+ RPAF+ ++G
Sbjct:    3 KLYGGTRSRASIVQWYLEELGVPYEFVKLDMQAGEHRQPDYL-TINPIGKVPAI-IDGDLRLWESGAILLYLADKYGKNATSPEERAIAAQWTLFANATLGPGIFGEATREK-EMPRLLAPLNEIFARQPFLLGDEFTVADVAVGSILTYIPIML--KLDLSAYPAVLEYMTRVSERPAFQKSIG 182
The following BLAST results are available for this feature:
BLAST of NO04G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28805.11.100e-8763.03glutathione s-transferase [Nannochloropsis gaditan... [more]
XP_005854977.16.000e-6779.01glutathione S-transferase [Nannochloropsis gaditan... [more]
WP_035996567.11.600e-3546.24glutathione S-transferase family protein [[Leptoly... [more]
WP_027844554.12.100e-3544.09glutathione S-transferase family protein [Mastigoc... [more]
WP_088891889.12.100e-3544.86glutathione S-transferase family protein [Leptolyn... [more]
WP_011242609.12.100e-3544.32MULTISPECIES: glutathione S-transferase family pro... [more]
WP_088243699.12.700e-3544.62glutathione S-transferase family protein [Calothri... [more]
WP_106170533.16.100e-3541.40glutathione S-transferase family protein [filament... [more]
XP_013906246.11.400e-3445.50glutathione S-transferase [Monoraphidium neglectum... [more]
WP_015127712.13.900e-3444.32glutathione S-transferase family protein [Calothri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009520NSK009520Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02970.1NO04G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578931gene_2068Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g19gene1913Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02970.1NO04G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02970 ID=NO04G02970|Name=NO04G02970|organism=Nannochloropsis oceanica|type=gene|length=1170bp
GGTTGCCGTAAGTGAGGCGTGATGCTCCTGCTATCTCACTCCACCTCTTT
CCCTTTCGTACCTACTTATCCACGGCAAGCACAGCCGCCCATCCAGCCAT
GGTACCATTACACAGGCGACCCGGCCTCTCTTGCCTCATCGTAGCCACGT
TGATGTCCAGTACGGCAACTGCTTTCAAACAACCTCCCCATCTCGCGCTC
TCATGTCGTCTCAGCCCCTGTCCTCGTCCCATCGGCGTTACTGGTCGAGG
CACCGTCGCATTTCACCGTGCCAAGTTTGTCTACCCCCGCCATTTACCCA
GCGGTTGGACCGTGGCCTTTGCCTCGGCGGATGGCCCTTCGTCTTCCCCC
GCCAAAACACCGCCACCCGCAGGCTACAAGCCCAAACTTTGGGCGTACTA
CCGATCAAGGTCTAAGATTATTGAATGGTATATGCAAGAGCTGGGGGTAG
CATATGACGTTGTACAAATTGACATGGGTGCTATGGGACACAAGGACCCG
GTTTTCATCCGGGACGTCAATCCGTTTGgtaagtgcacggagtgtctaat
tagtcgaccttttacattcattcttattgcttacactatactgccatcct
cactgcctgctcttctcacaagGGAAACTCCCCGTTATCACTATGGCAAA
CGGCTCCCCGCTCATCGAATCGGGATCACAGCTTTTGTACCTAGCCGACG
TGTTTGACCCCGACGTGACGACCGCTGAAGAACGGGGCGTGGCCTCTCAG
TGGACTCACTTTGCCAACGCTAGTTTGGGCCCCGCCATATTTATGAAAGA
GCAACGCGACGCCGGCGTAATGGACAAGCTGTTTGCCGTCCTGGACCAGG
AACTTGCATCCAAATCTTACCTCCAAGGAGAACGGTTCAGCGTGAGTGAT
GTGGCGGTCGGGTCTTATTTATCCTATATTCCCGTATTTTTCCCTGGACA
GATTTTGCTCGAACCTTACAAGCATTTGCAAGCGTATATTGGCCGAGTCA
CGACTCGGCCGGCATTTAAGAACACTGTGGGTGCCCCTCCGCCCTCAACG
GCATGAATGGGGCTAGCCGCTCCGGGACAGATGAGAAACAGATGACAACT
TTAACATGAAATAAGAATCGACAGTAACATGAAACCACATATAAAGTAAG
AAGCTAAAAAATCAAATAGA
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protein sequence of NO04G02970.1

>NO04G02970.1-protein ID=NO04G02970.1-protein|Name=NO04G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MVPLHRRPGLSCLIVATLMSSTATAFKQPPHLALSCRLSPCPRPIGVTGR
GTVAFHRAKFVYPRHLPSGWTVAFASADGPSSSPAKTPPPAGYKPKLWAY
YRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVIT
MANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIF
MKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFF
PGQILLEPYKHLQAYIGRVTTRPAFKNTVGAPPPSTA*
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Synonyms
Publications