NO04G02970.1, NO04G02970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02970.1
Unique NameNO04G02970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1076
Alignment locationchr4:789908..791077 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:789908..791077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02970.1 vs.
Match: EWM28805.1 (glutathione s-transferase [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 1.100e-87
Identity = 179/284 (63.03%), Postives = 215/284 (75.70%), Query Frame = 0 
Query:    7 RPGLSCLIVATLMSSTATAF--KQPPHLALSCRLSPCPRPIGVTGRGTVAFHRAKFVYPRHLPSGWTVAFASADGPSSSPAKTPPPA-GYKPKLWAYYRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVITMANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIFMKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFFPGQILLEPYKHLQAYIGRVTTRPAFKNTVGAPPPSTA 288
            R GL+  ++ T  S   +AF   QPP L          RP+   GR        +   P++  + ++ AFA+AD  +++    PP + GYKPK+WAYYRSRSKIIEWY QELGV Y+ VQ+DMGA  HK   F+++VNPFGKLPVITMA+G+PLIESG+QLLYLADVFDP+V+TAEERG+ASQWTHFANASLGP+IFMKEQR+AGVMDKLFAVL++ LA  SYLQGERF V DVAVGSYLSYIPVFFP QI L+ Y  L+AYI R+T+RPAFK TVGAPPPSTA
Sbjct:   10 RCGLAVALL-TCGSFLTSAFPGSQPPTLPA--------RPLA--GRRPTFLSPRRSYRPQYTRTTFSSAFAAAD--NAALRNIPPSSHGYKPKVWAYYRSRSKIIEWYCQELGVDYEAVQVDMGAGQHKASDFVKNVNPFGKLPVITMADGTPLIESGAQLLYLADVFDPNVSTAEERGLASQWTHFANASLGPSIFMKEQREAGVMDKLFAVLNELLAESSYLQGERFGVGDVAVGSYLSYIPVFFPDQISLDAYPFLRAYINRITSRPAFKRTVGAPPPSTA 280
The following BLAST results are available for this feature:
BLAST of NO04G02970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28805.11.100e-8763.03glutathione s-transferase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02970NO04G02970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02970.1NO04G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02970.1.cds1NO04G02970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02970.1.cds2NO04G02970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02970.1 ID=NO04G02970.1|Name=NO04G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp
GGTTGCCGTAAGTGAGGCGTGATGCTCCTGCTATCTCACTCCACCTCTTT
CCCTTTCGTACCTACTTATCCACGGCAAGCACAGCCGCCCATCCAGCCAT
GGTACCATTACACAGGCGACCCGGCCTCTCTTGCCTCATCGTAGCCACGT
TGATGTCCAGTACGGCAACTGCTTTCAAACAACCTCCCCATCTCGCGCTC
TCATGTCGTCTCAGCCCCTGTCCTCGTCCCATCGGCGTTACTGGTCGAGG
CACCGTCGCATTTCACCGTGCCAAGTTTGTCTACCCCCGCCATTTACCCA
GCGGTTGGACCGTGGCCTTTGCCTCGGCGGATGGCCCTTCGTCTTCCCCC
GCCAAAACACCGCCACCCGCAGGCTACAAGCCCAAACTTTGGGCGTACTA
CCGATCAAGGTCTAAGATTATTGAATGGTATATGCAAGAGCTGGGGGTAG
CATATGACGTTGTACAAATTGACATGGGTGCTATGGGACACAAGGACCCG
GTTTTCATCCGGGACGTCAATCCGTTTGGGAAACTCCCCGTTATCACTAT
GGCAAACGGCTCCCCGCTCATCGAATCGGGATCACAGCTTTTGTACCTAG
CCGACGTGTTTGACCCCGACGTGACGACCGCTGAAGAACGGGGCGTGGCC
TCTCAGTGGACTCACTTTGCCAACGCTAGTTTGGGCCCCGCCATATTTAT
GAAAGAGCAACGCGACGCCGGCGTAATGGACAAGCTGTTTGCCGTCCTGG
ACCAGGAACTTGCATCCAAATCTTACCTCCAAGGAGAACGGTTCAGCGTG
AGTGATGTGGCGGTCGGGTCTTATTTATCCTATATTCCCGTATTTTTCCC
TGGACAGATTTTGCTCGAACCTTACAAGCATTTGCAAGCGTATATTGGCC
GAGTCACGACTCGGCCGGCATTTAAGAACACTGTGGGTGCCCCTCCGCCC
TCAACGGCATGAATGGGGCTAGCCGCTCCGGGACAGATGAGAAACAGATG
ACAACTTTAACATGAAATAAGAATCGACAGTAACATGAAACCACATATAA
AGTAAGAAGCTAAAAAATCAAATAGA
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protein sequence of NO04G02970.1

>NO04G02970.1-protein ID=NO04G02970.1-protein|Name=NO04G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MVPLHRRPGLSCLIVATLMSSTATAFKQPPHLALSCRLSPCPRPIGVTGR
GTVAFHRAKFVYPRHLPSGWTVAFASADGPSSSPAKTPPPAGYKPKLWAY
YRSRSKIIEWYMQELGVAYDVVQIDMGAMGHKDPVFIRDVNPFGKLPVIT
MANGSPLIESGSQLLYLADVFDPDVTTAEERGVASQWTHFANASLGPAIF
MKEQRDAGVMDKLFAVLDQELASKSYLQGERFSVSDVAVGSYLSYIPVFF
PGQILLEPYKHLQAYIGRVTTRPAFKNTVGAPPPSTA*
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mRNA from alignment at chr4:789908..791077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02970.1 ID=NO04G02970.1|Name=NO04G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp|location=Sequence derived from alignment at chr4:789908..791077+ (Nannochloropsis oceanica)
GGTTGCCGTAAGTGAGGCGTGATGCTCCTGCTATCTCACTCCACCTCTTT
CCCTTTCGTACCTACTTATCCACGGCAAGCACAGCCGCCCATCCAGCCAT
GGTACCATTACACAGGCGACCCGGCCTCTCTTGCCTCATCGTAGCCACGT
TGATGTCCAGTACGGCAACTGCTTTCAAACAACCTCCCCATCTCGCGCTC
TCATGTCGTCTCAGCCCCTGTCCTCGTCCCATCGGCGTTACTGGTCGAGG
CACCGTCGCATTTCACCGTGCCAAGTTTGTCTACCCCCGCCATTTACCCA
GCGGTTGGACCGTGGCCTTTGCCTCGGCGGATGGCCCTTCGTCTTCCCCC
GCCAAAACACCGCCACCCGCAGGCTACAAGCCCAAACTTTGGGCGTACTA
CCGATCAAGGTCTAAGATTATTGAATGGTATATGCAAGAGCTGGGGGTAG
CATATGACGTTGTACAAATTGACATGGGTGCTATGGGACACAAGGACCCG
GTTTTCATCCGGGACGTCAATCCGTTTGGTAAGTGCACGGAGTGTCTAAT
TAGTCGACCTTTTACATTCATTCTTATTGCTTACACTATACTGCCATCCT
CACTGCCTGCTCTTCTCACAAGGGAAACTCCCCGTTATCACTATGGCAAA
CGGCTCCCCGCTCATCGAATCGGGATCACAGCTTTTGTACCTAGCCGACG
TGTTTGACCCCGACGTGACGACCGCTGAAGAACGGGGCGTGGCCTCTCAG
TGGACTCACTTTGCCAACGCTAGTTTGGGCCCCGCCATATTTATGAAAGA
GCAACGCGACGCCGGCGTAATGGACAAGCTGTTTGCCGTCCTGGACCAGG
AACTTGCATCCAAATCTTACCTCCAAGGAGAACGGTTCAGCGTGAGTGAT
GTGGCGGTCGGGTCTTATTTATCCTATATTCCCGTATTTTTCCCTGGACA
GATTTTGCTCGAACCTTACAAGCATTTGCAAGCGTATATTGGCCGAGTCA
CGACTCGGCCGGCATTTAAGAACACTGTGGGTGCCCCTCCGCCCTCAACG
GCATGAATGGGGCTAGCCGCTCCGGGACAGATGAGAAACAGATGACAACT
TTAACATGAAATAAGAATCGACAGTAACATGAAACCACATATAAAGTAAG
AAGCTAAAAAATCAAATAGA
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Coding sequence (CDS) from alignment at chr4:789908..791077+

>NO04G02970.1 ID=NO04G02970.1|Name=NO04G02970.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr4:789908..791077+ (Nannochloropsis oceanica)
ATGGTACCATTACACAGGCGACCCGGCCTCTCTTGCCTCATCGTAGCCAC
GTTGATGTCCAGTACGGCAACTGCTTTCAAACAACCTCCCCATCTCGCGC
TCTCATGTCGTCTCAGCCCCTGTCCTCGTCCCATCGGCGTTACTGGTCGA
GGCACCGTCGCATTTCACCGTGCCAAGTTTGTCTACCCCCGCCATTTACC
CAGCGGTTGGACCGTGGCCTTTGCCTCGGCGGATGGCCCTTCGTCTTCCC
CCGCCAAAACACCGCCACCCGCAGGCTACAAGCCCAAACTTTGGGCGTAC
TACCGATCAAGGTCTAAGATTATTGAATGGTATATGCAAGAGCTGGGGGT
AGCATATGACGTTGTACAAATTGACATGGGTGCTATGGGACACAAGGACC
CGGTTTTCATCCGGGACGTCAATCCGTTTGGGAAACTCCCCGTTATCACT
ATGGCAAACGGCTCCCCGCTCATCGAATCGGGATCACAGCTTTTGTACCT
AGCCGACGTGTTTGACCCCGACGTGACGACCGCTGAAGAACGGGGCGTGG
CCTCTCAGTGGACTCACTTTGCCAACGCTAGTTTGGGCCCCGCCATATTT
ATGAAAGAGCAACGCGACGCCGGCGTAATGGACAAGCTGTTTGCCGTCCT
GGACCAGGAACTTGCATCCAAATCTTACCTCCAAGGAGAACGGTTCAGCG
TGAGTGATGTGGCGGTCGGGTCTTATTTATCCTATATTCCCGTATTTTTC
CCTGGACAGATTTTGCTCGAACCTTACAAGCATTTGCAAGCGTATATTGG
CCGAGTCACGACTCGGCCGGCATTTAAGAACACTGTGGGTGCCCCTCCGC
CCTCAACGGCATGA
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Synonyms
Publications