NO04G02930, NO04G02930 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G02930
Unique Name	NO04G02930
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3605
Alignment location	chr4:775990..779594 -

Link to JBrowse

Properties


Property Name	Value
Description	Wd40 subgroup

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:775990..779594 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR001680	WD40_repeat

Homology

[Close]

BLAST of NO04G02930 vs. NCBI_GenBank
Match: XP_005854971.1 (wd40 subgroup, partial [Nannochloropsis gaditana CCMP526] >EKU21382.1 wd40 subgroup, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 688.0 bits (1774), Expect = 3.200e-194
Identity = 339/459 (73.86%), Postives = 385/459 (83.88%), Query Frame = 0

Query:  101 VGRENSWATQAPGDDDWSMDTPRIHYLREMEKLGQELYDMTGFKTEGAADLQNLVISSPLAPAQAHHMPFPPPSRAALAAASEHEKAVREIVMQEETRRQEVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMVGLASALDGQELFRAPAHAALVTALDYDANSGWMISAADDGVVKVF----RDLGGEGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYAIGSPPRK 556
            +GREN WATQAPG+DDW MDTPRIHYLREMEKLGQE++D+TG  + GAA++Q LV+S+P APAQ       P  +    AASE  K  RE+ +QEE RRQ V++ E CA NWREEP + RPVG VPGNRKVQQVKLS DR++YGSDAG VGLASA DG+ELFRA AHAALVTALDYDA +GWM+SAADDGVVKVF    R++GG GG  RVE+ G GMRHHS+RVV AE+LDH WGL+ASMDGKI +FEL+GGALVQEMWASDTLLA +VCK YVFAGL+GGPVEAFSIRNGGRSAFRYIAQRTPVRSLC +PLAGN+IRVVVGGQDGALRQF VR VMS+EGVW+VP DR+FDDRL+LVCNTHVD DTREVDQGF+L GH+ PVVAVACDE+KVVSASEDGSVIVWDAAKS+PR+ +R HVDGDLVGAVDFNERYLV            +A+G PPR+
Sbjct:    1 MGRENVWATQAPGEDDWCMDTPRIHYLREMEKLGQEVHDLTGLGSGGAAEVQGLVVSTPWAPAQPFQPSSVPFPQVPPGAASEQAKTAREVALQEELRRQ-VVMAEGCAMNWREEPAFCRPVGHVPGNRKVQQVKLSEDRVMYGSDAGAVGLASASDGRELFRAQAHAALVTALDYDAGTGWMVSAADDGVVKVFREQEREVGGAGGG-RVESGGPGMRHHSSRVVAAEVLDHRWGLSASMDGKIVVFELDGGALVQEMWASDTLLAVTVCKNYVFAGLLGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCAYPLAGNHIRVVVGGQDGALRQFQVRAVMSSEGVWRVPQDRAFDDRLVLVCNTHVDPDTREVDQGFVLTGHRGPVVAVACDEEKVVSASEDGSVIVWDAAKSSPRFTVRAHVDGDLVGAVDFNERYLVXXXXXXXXXXXXFAVGHPPRR 457

[Close]

BLAST of NO04G02930 vs. NCBI_GenBank
Match: CBJ33516.1 (F-box domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 89.4 bits (220), Expect = 5.000e-14
Identity = 69/279 (24.73%), Postives = 122/279 (43.73%), Query Frame = 0

Query:  269 ALVTALDYDANSGWMISAADDGVVKVFRDLGGEGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDY 548
            +L+ AL +D +   +++   D  V+V R+      + ++      +  H+ R+     LD     T+S DG + ++++  G  + ++            +GY+  GL  G V A+  +   R+    +       ++ T      ++ ++ GG DG ++ + +    + EG        S+         THV             +GH APV AV CDE +VVSA+ DG+V VWD       + I  H DG  VG++ F+   LV DGT   + + D+
Sbjct:    7 SLLPALYFDGD--LLVTGGSDKTVRVQRNSRDCLEKEQLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAAEGYMVTGLTDGRVLAWEAKRPERAPTEILTLDAHRGAVTTLSFPKQDV-LLTGGGDGRVKYWDLNQGGAAEGNRFEIGGESY---------THV------------FRGHAAPVTAVQCDEHRVVSAATDGTVSVWDIRSGQELFQIYGHADG--VGSLQFDREQLVTDGTGETLYLHDF 259

[Close]

BLAST of NO04G02930 vs. NCBI_GenBank
Match: XP_009035319.1 (hypothetical protein AURANDRAFT_62485 [Aureococcus anophagefferens] >EGB10532.1 hypothetical protein AURANDRAFT_62485 [Aureococcus anophagefferens])

HSP 1 Score: 69.7 bits (169), Expect = 4.100e-8
Identity = 61/245 (24.90%), Postives = 99/245 (40.41%), Query Frame = 0

Query:  314 MRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSL-------CTFPLAGNNIR---VVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYA 549
            ++ H  RV   + L     L+AS+D ++ ++++  G           +   +V  G    GL+ G V A+ I  G  +     A    VRSL         F   G +     +  GG DG +R + ++P     G      D +                 R   +   L+GH   +VA+  D+ K+VSAS DG+V  WD       + +  H     + ++ F    LV DGT G V+V D++
Sbjct:  281 LKGHGARVTGVKALGDDAILSASLDRRLLLWDVADGRHRVVAECRSPICCLAVADGVAVVGLLDGAVVAYDIDTGRVNFELAGAHEGAVRSLHFEAEAEDVFSREGRSAAGRLLCTGGSDGVVRCYTMQPAADGGGFEPRKPDGAAAXXXXXXXAVSAVYRERRCGK-HALEGHGGAIVALQADDAKLVSASIDGTVRCWDLKSGDQLFKLDGH--SRHINSLHFQGDLLVADGTQGTVIVHDFS 522

[Close]

BLAST of NO04G02930 vs. NCBI_GenBank
Match: XP_005711229.1 (unnamed protein product [Chondrus crispus] >CDF40935.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 65.5 bits (158), Expect = 7.800e-7
Identity = 89/357 (24.93%), Postives = 147/357 (41.18%), Query Frame = 0

Query:  198 RRQEVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMVGLASALDGQELFRAPAHAALVTALDYDANSGWMISA-ADDGVVKVFRDLGGEGGRM------RVEAVGGGMRHHSNRV------VTAEILD--HHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVC-KGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGT 539
            R +EV+   + A NWR   + +  V  V  +  V+++    D ++ G+ +G V  +  + G+ +     H   VTA+ Y     +M+SA A D  V V++    E   +      R EAV G +     R+      ++A  LD  +    +AS+DG + +  L+ G  +  +   + +L+ ++  KGY+  G   G V A+    G    F  ++      +            +V G   G L+            VW      SF+D  +L                  L  H+A V++V  D  KVVS+S DGSV V+  A     Y I        +GA  F++  L+ DGT
Sbjct:  105 RDKEVIRDRTIARNWRSGQYDASVVAAVTRD-YVRKLSFQDDFLVMGTASGGVVFSDLVSGRRVTCRHVHTGQVTAIHY--RDSYMVSAGASDCEVAVWQTERYEKRSLWDELDARGEAVDGVLTLPKVRIKTHIDQISALRLDVKNSRVYSASIDGTVRVSHLDTGEELSMIRVGEPVLSMTLTEKGYLLLGSTSGRVLAYQAERG----FHLLSMVCHNSNTTALAFWEETQVLVTGDAAGNLK------------VW------SFNDSTLL----------------GTLPKHEAAVMSVQIDGSKVVSSSRDGSVAVFGLASRQRLYSIVGFT--KYLGAATFDDVRLIADGT 418

The following BLAST results are available for this feature:

BLAST of NO04G02930 vs. NCBI_GenBank

BLAST of NO04G02930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4


Match Name	E-value	Identity	Description
XP_005854971.1	3.200e-194	73.86	wd40 subgroup, partial [Nannochloropsis gaditana C...	[more]
CBJ33516.1	5.000e-14	24.73	F-box domain containing protein [Ectocarpus silicu...	[more]
XP_009035319.1	4.100e-8	24.90	hypothetical protein AURANDRAFT_62485 [Aureococcus...	[more]
XP_005711229.1	7.800e-7	24.93	unnamed protein product [Chondrus crispus] >CDF409...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL081	nonsL081	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR111	ngnoR111	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009524	NSK009524	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G02930.1	NO04G02930.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578914	gene_2064	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G02930.1	NO04G02930.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G02930 ID=NO04G02930|Name=NO04G02930|organism=Nannochloropsis oceanica|type=gene|length=3605bp
TGGTGGGTGTGGTGTGGCACTTGCTTCATCTACGCGGTAGGCGAAAGCCG
AGCGCACAAACCTCCTCTCGCTTTACGTTTGGCGCCATCGCGCCTTCGAG
AACGACGTCGTGTGAAAATGGGCACTCCCGACTTTGCCTTGGGAGGCACG
TCACCACAAGTGCGCGGCAAAGCACTGGTCTTACGCAGTCGATGGCTCAA
TGCTCCACAGCTTTAAGGATGATGTGCCTGTAGGCACTGGGGGCGTATGC
ATTTAGGCGTCAAATGAGAATTTGTTAAGGCTTCTGATGATGGACGAGTC
CCAACAGCGCGTCACTGAGATGTGTGTTCCGCGTCTCTGGTCGGGCAAGA
CAGAGCTCAACAAGTTTGGTAGAGACATAGCAACACAGAGGCATGGCCTC
TACTCAGAGTGGTCGTGGCTTTGCGGTCTCATGGCATCAAATGGCGCCTT
CCGGCGTATTTTGGCTTTCGTTTCACCTTCTTTCCTTCCACTTGCCGGAA
CATGGCCGGCCAACTCACCACTTCACAACCCTCACAACATAACCAACCAC
ACGTACACAGGCAATTGATCAGCCCCACATCCACAAGTACAAATTAGCCC
AGGAAATCAGCTAGACGCCCGCTGACCGACGACGACGCTCCTTCAGATGA
AAATGCAGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGTCATG
TGTACCGCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTTTTAT
GGCGGCACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCAGCGG
TGAGCCGGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGCAGGT
GCAGGACGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCGAGGA
ATGGGAGAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGACGTGG
GTCGAGAAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTGGTCG
ATGGACACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAGGGCA
AGAATTGTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGACTTAC
AGAACCTGGTGATTTCTAGCCCGTTAGCGCCCGCTCAGGCTCATCACATG
CCGTTTCCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAACACGA
GAAGGCTGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAAGAGG
TGTTGGTCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTTTTAT
AGCCGCCCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGGTGAA
GCTGTCCGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTGGGCC
TGGCAAGTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCATGCT
GCACTGGTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGATTTC
TGCAGCGGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGGGAGG
GAGGACGGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCATTCG
AACAGGGTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAACGGC
GTCGATGGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCACTAG
TGCAGGAGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTGCAAG
GGGTATGTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTTCGAT
CCGTAACGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACGCCGG
TGCGGTCTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGTGGTA
GTGGGGGGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGGTCAT
GTCGACGGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGATGACC
GGTTGATCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGAAGTA
GACCAGGGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAGTGGC
GTGCGATGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTCATTG
TGTGGGATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCATGTC
GATGGGGATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGGTGTA
CGATGGCACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGATCCC
CTCCTCGCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTCTGGC
CTCGGTGGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTCCTGG
TGCAAGGGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCTCGCC
CTTCGTCTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGCCCCT
CATCAGCGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGAGTGG
CGGGCCTCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGCCATG
GTCCTACTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGTGCAT
AAGCAGCAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCGTTGA
TCAAGGGGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAAGAGA
AGGGCCAAGAAGGGGAAGGGTCCGCGTAAAGAGGAATCCCAGGCCTTGTG
TAACATGTGATTTTGTGATTTATGCTTCCTTCTCCAGCCATCGCGGCCCT
CTTTCTCCTCTCTCCTTTGCAAATAACCCACTCCGCTACATACGTTGTAC
ATTTGTGTCTCATTGTGTTATAATATGAAAAGTACTTTTGCCATGTCCCC
CCACTACCCACCCAGTCTTTTCGTCCCCTCCCTTTTATTTTTGGAGGGGG
TTGGTGGCAGGAAAAAAGAGGGAGAAGTAGAAGATAAATACAAATGAAAG
GAACAAGAAGAAGACAGGAAAAGGAGAAAATGAAAGGGATAGTGCTGGCA
ATGACACACACAAGCAAGGCAATAATTTGACCTGGCAAAGGAAGGCATGG
GAAGCGAGTTGCAGAATCCGAAGAAGGAAACTCAAGACGCATCTATGGTA
TCTATCCAAACAGAGAGAGACGGGGAGGTCGCTCAATGACAGGAAGGAAG
AGACAGACATCCAGCAGCAGGACACTATTTACCATATACTCGTGCCCGCG
TGTTTTTGCTGTGTACCTGTTAAGAAGAGAGTGAAGAGAGGAAAAGAAAT
AATCTATACTTGGACAGGCAGGGAGAAGACGAACGAAAGGGGGGAGGGAG
GAAACAAAGGTGGGCAGCAAGCGCCCGTTTGTAAATAGGGAAGGAAAAGA
CATAATGCTTCTCCTCATCCTTTTCACCTCGCTATTATTACTGTTAAAAA
GATAGACGGACAAAAAATGAAGGAATGCGCAGTTGTTCAGTACAGGGCTT
AGCGAAGCAGACACAAACGCAAACAAAGAAGAAATCAAACAGCTAGGCGG
TGAGA

protein sequence of NO04G02930.1

>NO04G02930.1-protein ID=NO04G02930.1-protein|Name=NO04G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MKMQGTRKGGGGAKTHVMCTAATFILLAGSAQSFMAAPASLMHSFLQESS
AVSRQTLGARVTTGTAAGAGRKRRSLTLAARGSEEWENASGGNSGSSGND
VGRENSWATQAPGDDDWSMDTPRIHYLREMEKLGQELYDMTGFKTEGAAD
LQNLVISSPLAPAQAHHMPFPPPSRAALAAASEHEKAVREIVMQEETRRQ
EVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMV
GLASALDGQELFRAPAHAALVTALDYDANSGWMISAADDGVVKVFRDLGG
EGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGA
LVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRT
PVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFD
DRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSV
IVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYAIG
SPPRKASGSSAGGAAASGLGGLGNDGKSRRSSSPGARGSRGSGGGQHRRS
RPSSPSSSSFPSRKDGAPHQRQGGPPSPSDDSASGGPRQNSPFLGGWILG
HGPTDLEGVGGVGMGGVHKQQEPAADFSSADGVVDQGEDSNNAAASEESK
EKGQEGEGSA*

Synonyms

Publications