NO04G02770, NO04G02770 (gene) Nannochloropsis oceanica

Overview
NameNO04G02770
Unique NameNO04G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr4:733361..734044 -

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Properties
Property NameValue
DescriptionFKBP-like peptidyl-prolyl cis-trans isomerase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:733361..734044 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
Homology
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_002459468.1 (peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Sorghum bicolor] >EER95989.1 hypothetical protein SORBI_3002G061900 [Sorghum bicolor])

HSP 1 Score: 105.5 bits (262), Expect = 2.200e-19
Identity = 57/132 (43.18%), Postives = 85/132 (64.39%), Query Frame = 0 
Query:   86 RLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            ++ ++    L NG++Y D+ +GSGA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R I VP +LA+GKKG+   IP +AT+  DV + SIK  P GT
Sbjct:   86 KIPDSEFTTLPNGLKYYDIKVGSGAQAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGNSE-RGNVLKGLDLGVEGMKVGGQRLIIVPPELAYGKKGVQE-IPPNATIELDVELLSIKQSPFGT 215
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: POO01844.1 (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Trema orientalis])

HSP 1 Score: 105.5 bits (262), Expect = 2.200e-19
Identity = 66/172 (38.37%), Postives = 100/172 (58.14%), Query Frame = 0 
Query:   46 QEDSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            Q + RR+ +   LA   G + +  V   VS    A +G K +  +    L NG++Y D+ +G+G    +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  GS+ KG+ LG+EGM++GG+R + VP +LA+GKKG+   IP +AT+  DV + +IK  P GT
Sbjct:   60 QNEGRRALVGSLLATAAG-MYVCDVAEAVSTSRRALRGAK-VPESEYTTLPNGLKYYDLKVGNGTKAVKGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSE-RGSVLKGLDLGVEGMRVGGQRLLIVPPELAYGKKGVQE-IPPNATIELDVELLAIKQSPFGT 227
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: NP_001347078.1 (putative FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Zea mays] >ACF84547.1 unknown [Zea mays] >ONM52030.1 Peptidyl-prolyl cis-trans isomerase [Zea mays])

HSP 1 Score: 105.1 bits (261), Expect = 2.800e-19
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 0 
Query:   95 LANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            L NG++Y D+ +GSGA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R I VP +LA+GKKG+   IP +AT+  DV + SIK  P GT
Sbjct:   93 LPNGLKYYDIKVGSGAEAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGNSE-RGNVLKGLDLGVEGMKVGGQRLIIVPPELAYGKKGVQE-IPPNATIELDVELLSIKQSPFGT 213
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_010480453.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Camelina sativa])

HSP 1 Score: 105.1 bits (261), Expect = 2.800e-19
Identity = 72/198 (36.36%), Postives = 107/198 (54.04%), Query Frame = 0 
Query:   20 PTLAFFPSTGSPSTVTTQMMATGRAGQEDSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            P     PS G    + ++ + +      + RR  L   LA G G L L      VS    A +  K L  +    L NG++Y D+ +G+GA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R + VP +LA+GKKG+   IP +AT+  D+ + SIK  P GT
Sbjct:   30 PYRCSLPSPGGEKIIRSETVDSPAPVSYEGRRVLLGCLLASGSGML-LTDSAEAVSTSRRALRASK-LPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGQSE-RGNVLKGLDLGVEGMRVGGQRLVIVPPELAYGKKGVQE-IPPNATIELDIELLSIKQSPFGT 223
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_010464668.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Camelina sativa] >XP_010486589.1 PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Camelina sativa])

HSP 1 Score: 105.1 bits (261), Expect = 2.800e-19
Identity = 72/198 (36.36%), Postives = 107/198 (54.04%), Query Frame = 0 
Query:   20 PTLAFFPSTGSPSTVTTQMMATGRAGQEDSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            P     PS G    + ++ + +      + RR  L   LA G G L L      VS    A +  K L  +    L NG++Y D+ +G+GA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R + VP +LA+GKKG+   IP +AT+  D+ + SIK  P GT
Sbjct:   30 PYRCSLPSPGGEKIIRSETVDSPALVSYEGRRVLLGCLLASGSGML-LTDSAEAVSTSRRALRASK-LPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGQSE-RGNVLKGLDLGVEGMRVGGQRLVIVPPELAYGKKGVQE-IPPNATIELDIELLSIKQSPFGT 223
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: PUZ68773.1 (hypothetical protein GQ55_2G055700 [Panicum hallii var. hallii])

HSP 1 Score: 105.1 bits (261), Expect = 2.800e-19
Identity = 67/161 (41.61%), Postives = 95/161 (59.01%), Query Frame = 0 
Query:   58 LAGG-LGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            +AGG  GA+S +   L  S IP           +    L NG++Y D+ +GSGA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R I VP +LA+GKKG+   IP +AT+  DV + SIK  P GT
Sbjct:   63 VAGGEAGAVSTSRRALRASKIP----------ESEFTTLPNGLKYYDIKVGSGAKAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGNSE-RGNVLKGLDLGVEGMKVGGQRLIIVPPELAYGKKGVQE-IPPNATIELDVELLSIKQSPFGT 211
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: OEL33435.1 (Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Dichanthelium oligosanthes])

HSP 1 Score: 104.8 bits (260), Expect = 3.700e-19
Identity = 64/155 (41.29%), Postives = 91/155 (58.71%), Query Frame = 0 
Query:   63 GALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            GA+S +   L  S IP           +    L NG++Y D+ +GSGA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R I VP +LA+GKKG+   IP +AT+  DV + SIK  P GT
Sbjct:   69 GAVSTSRRALRASKIP----------ESEFTTLPNGLKYYDIKVGSGAKAVKGSRVAVHYVAKWKGITFMTSRQGMGVGGGTPYGFDVGNSE-RGNVLKGLDLGVEGMKVGGQRLIIVPPELAYGKKGVQE-IPPNATIELDVELLSIKQSPFGT 211
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: NP_187617.1 (FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] >Q9SR70.1 RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic; Short=PPIase FKBP16-4; AltName: Full=FK506-binding protein 16-4; Short=AtFKBP16-4; AltName: Full=Immunophilin FKBP16-4; AltName: Full=Rotamase; Flags: Precursor >AAF04431.1 unknown protein [Arabidopsis thaliana] >AAM19814.1 AT3g10060/T22K18_11 [Arabidopsis thaliana] >AAM67428.1 AT3g10060/T22K18_11 [Arabidopsis thaliana] >AEE74855.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] >OAP01319.1 hypothetical protein AXX17_AT3G09760 [Arabidopsis thaliana])

HSP 1 Score: 104.4 bits (259), Expect = 4.800e-19
Identity = 72/198 (36.36%), Postives = 106/198 (53.54%), Query Frame = 0 
Query:   20 PTLAFFPSTGSPSTVTTQMMATGRAGQEDSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            P     PS G    + T+ +        + RR  L   LA   G LS  +    VS    A +  K L  +    L NG++Y D+ +G+GA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R + VP +LA+GKKG+   IP +AT+  D+ + SIK  P GT
Sbjct:   30 PYRCSLPSPGCEKVIRTETVLPPAPVSCEGRRVLLGCLLATASGILSTGSAE-AVSTSRRALRASK-LPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGQSE-RGNVLKGLDLGVEGMRVGGQRLVIVPPELAYGKKGVQE-IPPNATIELDIELLSIKQSPFGT 223
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_012468240.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic isoform X1 [Gossypium raimondii] >KJB16734.1 hypothetical protein B456_002G245200 [Gossypium raimondii])

HSP 1 Score: 104.4 bits (259), Expect = 4.800e-19
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 0 
Query:   46 QEDSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            Q ++RR  L   L     A+ ++ V    S    A +G K +       L NG++Y D+ +GSG    +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R + VP +LA+GKKG+   IP +AT+  DV + SIK  P GT
Sbjct:   62 QHEARRVVLGSLLTAA-AAMYISDVAEAASTSRRALRGAK-IPETEFTTLPNGLKYYDLKVGSGLKAVKGSRVAVHYVAKWRGVTFMTSRQGLGVGGGTPYGFDIGQSE-RGNVLKGLDLGVEGMRVGGQRLLIVPPELAYGKKGVQE-IPPNATIELDVELLSIKQSPFGT 229
[Close]
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_019106323.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris] >KMT06435.1 hypothetical protein BVRB_7g161060 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 104.4 bits (259), Expect = 4.800e-19
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 0 
Query:   48 DSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK 211
            D RR+ ++  L    G L +A V   VS    A +G K +  +    L+NG++Y D+ +G GA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R + VP  LA+G KG+   IP +AT+  DV + SIK
Sbjct:   55 DGRRAFMNCFLIAAAG-LCIADVAGAVSTSRRALRGAK-IPESEFTTLSNGLKYYDLKVGGGAQAVKGSRVAVHYVAKWKGITFMTSRQGMGVGGGTPYGFDIGQSE-RGTVLKGLDLGVEGMKVGGQRLLIVPPQLAYGSKGVQE-IPPNATIELDVELLSIK 214
The following BLAST results are available for this feature:
BLAST of NO04G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002459468.12.200e-1943.18peptidyl-prolyl cis-trans isomerase FKBP16-4, chlo... [more]
POO01844.12.200e-1938.37Peptidyl-prolyl cis-trans isomerase, FKBP-type [Tr... [more]
NP_001347078.12.800e-1946.34putative FKBP-type peptidyl-prolyl cis-trans isome... [more]
XP_010480453.12.800e-1936.36PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
XP_010464668.12.800e-1936.36PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
PUZ68773.12.800e-1941.61hypothetical protein GQ55_2G055700 [Panicum hallii... [more]
OEL33435.13.700e-1941.29Peptidyl-prolyl cis-trans isomerase FKBP16-4, chlo... [more]
NP_187617.14.800e-1936.36FKBP-like peptidyl-prolyl cis-trans isomerase fami... [more]
XP_012468240.14.800e-1938.37PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
XP_019106323.14.800e-1939.02PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009540NSK009540Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02770.1NO04G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578855gene_2049Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02770.1NO04G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02770 ID=NO04G02770|Name=NO04G02770|organism=Nannochloropsis oceanica|type=gene|length=684bp
ATGTGTGTCACGACATCGTTGCTCGTCCTGGTCGTTGCCTGCTACTGTCT
GGCCGTACCAACTCTGGCCTTCTTTCCAAGCACCGGCTCCCCGTCCACGG
TGACGACTCAAATGATGGCCACTGGCCGGGCAGGCCAGGAAGACAGCCGA
CGCAGCGCCCTCAGCAAGACTCTGGCTGGCGGACTGGGTGCCTTGTCCTT
GGCGACTGTTACACTGGGCGTGTCCCCCATTCCGGCGGCCGCCAAGGGCG
TGAAGCGGTTGAAAAATGCGCCCACCGTGAAATTGGCAAATGGGGTTGAG
TATCAGGACATGACGTTGGGCTCCGGTGCGACGCCGCATGAAGGGGATCG
TGTTGCCGTTCACTATAGCTTGTACTACAATGGCTTAGAGGTCGAGTCCA
GCCGGGATTCGAGTGGGCTGGCAGCGCGCCCGTATGGATTTAACTGGGGC
ACGGATAAGGGTACGGGGTCCATTTGCAAGGGGGTGCAGCTGGGGATGGA
GGGAATGCAGATCGGTGGGCGCCGTAAGATTACTGTGCCATCTGATTTGG
CATTTGGGAAGAAGGGGTTGCCGCCGTTTATTCCTGGGGATGCGACGGTG
CTTTTTGACGTGTCGATATGGAGCATTAAGCCTGCGGGGACGAATCCGAA
TTTGACGTTGCCTGGTCAGCAGAATTACTTCTAG
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protein sequence of NO04G02770.1

>NO04G02770.1-protein ID=NO04G02770.1-protein|Name=NO04G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MCVTTSLLVLVVACYCLAVPTLAFFPSTGSPSTVTTQMMATGRAGQEDSR
RSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVE
YQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWG
TDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATV
LFDVSIWSIKPAGTNPNLTLPGQQNYF*
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Synonyms
Publications