NO04G02770.1, NO04G02770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02770.1
Unique NameNO04G02770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr4:733361..734044 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:733361..734044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G02770.1 vs.
Match: CBN77045.1 (FKBP-type peptidyl-prolyl cis-trans isomerase 9 [Ectocarpus siliculosus])

HSP 1 Score: 196.1 bits (497), Expect = 1.200e-46
Identity = 107/194 (55.15%), Postives = 134/194 (69.07%), Query Frame = 0
Query:   31 PSTVTTQM-MATGRAGQEDSRRSALSKTLAGGLGA-LSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIKPAGTNPNLTLPG 223
            P++VT  + M+    G   SRRS     LA G+ A L+ +   L   P PAAAK  +     P V L +G  YQ+MT+G G +P +GDRVAVHYSL+YNGLEVESSRDS GLAARP G+  GT  G GS+  G+   ++GM++GGRRK+T+P  LAFGK G PPFIP DATV  DVS+WS+KPAGT+PN+TLPG
Sbjct:   19 PTSVTAAVVMSHDGEGLPVSRRS-----LAEGVSATLAASAALLTAQPSPAAAKPERIKGGGPLVTLEDGASYQEMTIGDGPSPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTAGTVNGPGSVPPGLDEIVKGMRVGGRRKMTLPPQLAFGKAGRPPFIPPDATVDMDVSLWSVKPAGTDPNVTLPG 207          
The following BLAST results are available for this feature:
BLAST of NO04G02770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77045.11.200e-4655.15FKBP-type peptidyl-prolyl cis-trans isomerase 9 [E... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02770NO04G02770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02770.1NO04G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02770.1.cds1NO04G02770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02770.1 ID=NO04G02770.1|Name=NO04G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGTGTGTCACGACATCGTTGCTCGTCCTGGTCGTTGCCTGCTACTGTCT
GGCCGTACCAACTCTGGCCTTCTTTCCAAGCACCGGCTCCCCGTCCACGG
TGACGACTCAAATGATGGCCACTGGCCGGGCAGGCCAGGAAGACAGCCGA
CGCAGCGCCCTCAGCAAGACTCTGGCTGGCGGACTGGGTGCCTTGTCCTT
GGCGACTGTTACACTGGGCGTGTCCCCCATTCCGGCGGCCGCCAAGGGCG
TGAAGCGGTTGAAAAATGCGCCCACCGTGAAATTGGCAAATGGGGTTGAG
TATCAGGACATGACGTTGGGCTCCGGTGCGACGCCGCATGAAGGGGATCG
TGTTGCCGTTCACTATAGCTTGTACTACAATGGCTTAGAGGTCGAGTCCA
GCCGGGATTCGAGTGGGCTGGCAGCGCGCCCGTATGGATTTAACTGGGGC
ACGGATAAGGGTACGGGGTCCATTTGCAAGGGGGTGCAGCTGGGGATGGA
GGGAATGCAGATCGGTGGGCGCCGTAAGATTACTGTGCCATCTGATTTGG
CATTTGGGAAGAAGGGGTTGCCGCCGTTTATTCCTGGGGATGCGACGGTG
CTTTTTGACGTGTCGATATGGAGCATTAAGCCTGCGGGGACGAATCCGAA
TTTGACGTTGCCTGGTCAGCAGAATTACTTCTAG
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protein sequence of NO04G02770.1

>NO04G02770.1-protein ID=NO04G02770.1-protein|Name=NO04G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MCVTTSLLVLVVACYCLAVPTLAFFPSTGSPSTVTTQMMATGRAGQEDSR
RSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVE
YQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWG
TDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATV
LFDVSIWSIKPAGTNPNLTLPGQQNYF*
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mRNA from alignment at chr4:733361..734044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02770.1 ID=NO04G02770.1|Name=NO04G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp|location=Sequence derived from alignment at chr4:733361..734044- (Nannochloropsis oceanica)
ATGTGTGTCACGACATCGTTGCTCGTCCTGGTCGTTGCCTGCTACTGTCT GGCCGTACCAACTCTGGCCTTCTTTCCAAGCACCGGCTCCCCGTCCACGG TGACGACTCAAATGATGGCCACTGGCCGGGCAGGCCAGGAAGACAGCCGA CGCAGCGCCCTCAGCAAGACTCTGGCTGGCGGACTGGGTGCCTTGTCCTT GGCGACTGTTACACTGGGCGTGTCCCCCATTCCGGCGGCCGCCAAGGGCG TGAAGCGGTTGAAAAATGCGCCCACCGTGAAATTGGCAAATGGGGTTGAG TATCAGGACATGACGTTGGGCTCCGGTGCGACGCCGCATGAAGGGGATCG TGTTGCCGTTCACTATAGCTTGTACTACAATGGCTTAGAGGTCGAGTCCA GCCGGGATTCGAGTGGGCTGGCAGCGCGCCCGTATGGATTTAACTGGGGC ACGGATAAGGGTACGGGGTCCATTTGCAAGGGGGTGCAGCTGGGGATGGA GGGAATGCAGATCGGTGGGCGCCGTAAGATTACTGTGCCATCTGATTTGG CATTTGGGAAGAAGGGGTTGCCGCCGTTTATTCCTGGGGATGCGACGGTG CTTTTTGACGTGTCGATATGGAGCATTAAGCCTGCGGGGACGAATCCGAA TTTGACGTTGCCTGGTCAGCAGAATTACTTCTAG
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Coding sequence (CDS) from alignment at chr4:733361..734044-

>NO04G02770.1 ID=NO04G02770.1|Name=NO04G02770.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr4:733361..734044- (Nannochloropsis oceanica)
ATGTGTGTCACGACATCGTTGCTCGTCCTGGTCGTTGCCTGCTACTGTCT
GGCCGTACCAACTCTGGCCTTCTTTCCAAGCACCGGCTCCCCGTCCACGG
TGACGACTCAAATGATGGCCACTGGCCGGGCAGGCCAGGAAGACAGCCGA
CGCAGCGCCCTCAGCAAGACTCTGGCTGGCGGACTGGGTGCCTTGTCCTT
GGCGACTGTTACACTGGGCGTGTCCCCCATTCCGGCGGCCGCCAAGGGCG
TGAAGCGGTTGAAAAATGCGCCCACCGTGAAATTGGCAAATGGGGTTGAG
TATCAGGACATGACGTTGGGCTCCGGTGCGACGCCGCATGAAGGGGATCG
TGTTGCCGTTCACTATAGCTTGTACTACAATGGCTTAGAGGTCGAGTCCA
GCCGGGATTCGAGTGGGCTGGCAGCGCGCCCGTATGGATTTAACTGGGGC
ACGGATAAGGGTACGGGGTCCATTTGCAAGGGGGTGCAGCTGGGGATGGA
GGGAATGCAGATCGGTGGGCGCCGTAAGATTACTGTGCCATCTGATTTGG
CATTTGGGAAGAAGGGGTTGCCGCCGTTTATTCCTGGGGATGCGACGGTG
CTTTTTGACGTGTCGATATGGAGCATTAAGCCTGCGGGGACGAATCCGAA
TTTGACGTTGCCTGGTCAGCAGAATTACTTCTAG
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Synonyms
Publications