NO04G02770, NO04G02770 (gene) Nannochloropsis oceanica

Overview
NameNO04G02770
Unique NameNO04G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr4:733361..734044 -

Link to JBrowse

Properties
Property NameValue
DescriptionFKBP-like peptidyl-prolyl cis-trans isomerase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:733361..734044 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
Homology
BLAST of NO04G02770 vs. NCBI_GenBank
Match: CBN77045.1 (FKBP-type peptidyl-prolyl cis-trans isomerase 9 [Ectocarpus siliculosus])

HSP 1 Score: 196.1 bits (497), Expect = 1.200e-46
Identity = 107/194 (55.15%), Postives = 134/194 (69.07%), Query Frame = 0
Query:   31 PSTVTTQ-MMATGRAGQEDSRRSALSKTLAGGLGA-LSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIKPAGTNPNLTLPG 223
            P++VT   +M+    G   SRRS     LA G+ A L+ +   L   P PAAAK  +     P V L +G  YQ+MT+G G +P +GDRVAVHYSL+YNGLEVESSRDS GLAARP G+  GT  G GS+  G+   ++GM++GGRRK+T+P  LAFGK G PPFIP DATV  DVS+WS+KPAGT+PN+TLPG
Sbjct:   19 PTSVTAAVVMSHDGEGLPVSRRS-----LAEGVSATLAASAALLTAQPSPAAAKPERIKGGGPLVTLEDGASYQEMTIGDGPSPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTAGTVNGPGSVPPGLDEIVKGMRVGGRRKMTLPPQLAFGKAGRPPFIPPDATVDMDVSLWSVKPAGTDPNVTLPG 207          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: CEM08787.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 176.4 bits (446), Expect = 1.000e-40
Identity = 104/222 (46.85%), Postives = 138/222 (62.16%), Query Frame = 0
Query:    6 SLLVLVVACYCLAVPTLAFFPSTGSPSTVTTQMMATGRAGQEDSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIKPAGTNPNLTLPGQQNYF 228
            SLL L+ +C+   +P  +        S +  Q +++      D         L   LGAL  A + L   P+PAAA GVKR KN   V+L NGV YQD+ LG G     GD VA+HYSL+ NG+EVES+RDSSGLAARP+GF +G D     I K ++  +EGM++GGRRK+ +PS  A+G+KG    +P +  V FDV++WS+K AGTNPNLTLPG QN+F
Sbjct:   10 SLLSLLSSCFSFLLPCSSSSRRRCLRSLLNAQRLSSDALPSTDVESVDRRSLLLRPLGALLAAGIAL---PLPAAA-GVKRCKNCAAVELDNGVRYQDVLLGDGNQLEVGDTVAIHYSLFCNGIEVESTRDSSGLAARPFGFTYGGDFNR-KIPKALEDALEGMKVGGRRKVVLPSAEAYGEKG-RGMVPPNTPVEFDVTVWSVKKAGTNPNLTLPGSQNFF 225          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_005717987.1 (unnamed protein product [Chondrus crispus] >CDF38118.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 153.7 bits (387), Expect = 7.000e-34
Identity = 77/143 (53.85%), Postives = 99/143 (69.23%), Query Frame = 0
Query:   76 PIPAAAKGVKRL--KNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIKPAGTNP 217
            P  A A   KR+  K  P V L +G+ Y+D+++G G TP  GD VA+HYSL++  LEVESSR+S GLAA P GF +G   G GSI +G+  GM+GM++GG R +TVP +LAFG+KG  P IP +ATV F VS+ S K AGTNP
Sbjct:    5 PPHAQALSKKRILAKAGPPVTLPSGITYRDISIGKGYTPRPGDSVAIHYSLFFKDLEVESSRESQGLAASPVGFTFGATSGPGSIMRGISEGMDGMKVGGLRLMTVPPELAFGQKGRMPLIPSNATVDFAVSLLSCKKAGTNP 147          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: OSX77013.1 (hypothetical protein BU14_0165s0008 [Porphyra umbilicalis])

HSP 1 Score: 150.2 bits (378), Expect = 7.700e-33
Identity = 64/130 (49.23%), Postives = 93/130 (71.54%), Query Frame = 0
Query:   88 KNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIKPAGTNPN 218
            K  P   + NG+ Y+++ +G G  P+ GD VA+HYSLY   +EVESSR+S GLAA P GF +G + G G++ KG+ LGM+GM++GG+R + VP + A+G +G PP +P +ATV F VS+ S++ +GTNPN
Sbjct:  125 KAGPEQTMENGIRYREVIIGKGFEPNSGDTVAIHYSLYCGDIEVESSRESQGLAASPLGFTYGAEAGAGAVLKGINLGMDGMKVGGQRLLVVPPEYAYGSRGKPPLVPPNATVEFAVSLLSVRRSGTNPN 254          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: GAQ86112.1 (FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Klebsormidium nitens])

HSP 1 Score: 111.3 bits (277), Expect = 4.000e-21
Identity = 77/199 (38.69%), Postives = 115/199 (57.79%), Query Frame = 0
Query:   29 GSPSTVTTQMMATGRAGQEDSRRSALSKTLAGGL---------GAL--SLATVTLGVSPIPA-----AAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK 211
            G+P    TQ  +  RA      R++ S+   G L         GAL  +LA  ++G  P  A     AA+ VK  ++  T  L NG++  D+T+GSGAT  +G+RVAVHY + + G+   +SR   G+    PYGF+ G  + TG + KG+  G+EGM++GG+RK+ +P +LA+GK+G+   IP DAT+  DV + SIK
Sbjct:   37 GTPFLCRTQRRSLSRARHWFPCRASASEVEHGALPVGRRLVSTGALFAALAGASIGAQPASAASRARAARNVKVPEDQYTT-LPNGLKIFDVTVGSGATATKGERVAVHYDVKWKGVTFSTSRMGQGVTGGTPYGFDVGASE-TGLVLKGLDYGVEGMRVGGQRKLLIPPELAYGKRGVQE-IPPDATLEVDVELLSIK 232          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: PIA43505.1 (hypothetical protein AQUCO_01900123v1 [Aquilegia coerulea] >PIA43506.1 hypothetical protein AQUCO_01900123v1 [Aquilegia coerulea] >PIA43507.1 hypothetical protein AQUCO_01900123v1 [Aquilegia coerulea])

HSP 1 Score: 108.6 bits (270), Expect = 2.600e-20
Identity = 67/170 (39.41%), Postives = 100/170 (58.82%), Query Frame = 0
Query:   48 DSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            + RR+ L   LA  +G +S+  V   VS    A +G K +  +    L NG++Y D+ +G G    +G RVAVHY   + G+   +SR   G+    PYGF+ G D   G++ KG+ LG+EGM++GG+R + VP +LA+GKKG+   IP +AT+  DV + +IK  P GT
Sbjct:   69 EGRRALLGCVLAAAVG-ISICDVAEAVSSSRRALRGSK-IPESEFTTLPNGLKYYDLQVGGGTKAVKGSRVAVHYVAKWKGITFMTSRQGMGVGGGTPYGFDVG-DSARGAVLKGLDLGVEGMRVGGQRLVIVPPELAYGKKGVQE-IPPNATIELDVELLAIKQSPFGT 234          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_024023008.1 (peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Morus notabilis])

HSP 1 Score: 107.1 bits (266), Expect = 7.500e-20
Identity = 69/178 (38.76%), Postives = 103/178 (57.87%), Query Frame = 0
Query:   40 ATGRAGQEDSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            AT ++ Q  +RR+ +   +    G + L  V   VS    A +G K +  +    L NG++Y D+ +GSG    +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  GS+ KG+ LG+EGM++GG+R + VP +LA+GKKG+   IP +AT+  DV + SIK  P GT
Sbjct:   54 ATNQSSQCQARRALVGSLMILAAG-MYLCDVAEAVSTSRRALRGSK-IPESEYTTLPNGLKYYDLKVGSGVQAKKGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSE-RGSVLKGLDLGVEGMRVGGQRLLIVPPELAYGKKGVQE-IPPNATIELDVELLSIKQSPFGT 227          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_021836693.1 (peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like isoform X1 [Spinacia oleracea])

HSP 1 Score: 106.3 bits (264), Expect = 1.300e-19
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 0
Query:   48 DSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK 211
            D RR+ +S  L    G L +  +   VS    A +G K +       L NG++Y D+ +G GA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG++GM++GG+R + VP +LA+GKKG+   IP +AT+ FDV + SIK
Sbjct:   57 DGRRAFMSCLLIAA-GGLCITDLAGAVSTSRRALRGAK-IPETEFTTLPNGLKYYDLKVGGGAEAVKGSRVAVHYVAKWKGITFMTSRQGMGVGGGTPYGFDVGQSE-RGTVLKGLDLGVQGMKVGGQRILVVPPELAYGKKGIQE-IPPNATIEFDVELLSIK 216          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: AEZ49159.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Wolffia australiana])

HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19
Identity = 65/171 (38.01%), Postives = 99/171 (57.89%), Query Frame = 0
Query:   48 DSRRSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGTN 216
            D+ R  L  +      +L +A +   VS    A KG K +  +  + L NG++Y D+ +G+GA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R + VP  LA+G KG+   IP +AT+  DV + SIK  P GT+
Sbjct:   64 DAGRRLLMGSSIASAASLCIADIANAVSTSRRALKGAK-VPESDFITLPNGLKYYDLKVGTGAEAVKGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSE-KGNVLKGLDLGVEGMKVGGQRLLIVPPQLAYGSKGVQE-IPPNATIELDVELLSIKQSPFGTS 231          
BLAST of NO04G02770 vs. NCBI_GenBank
Match: XP_004955714.1 (peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Setaria italica])

HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19
Identity = 68/167 (40.72%), Postives = 98/167 (58.68%), Query Frame = 0
Query:   52 SALSKTLAGG-LGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVEYQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGL-AARPYGFNWGTDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATVLFDVSIWSIK--PAGT 215
            +A+   +AGG  GA+S +   L  S IP           +    L NG++Y D+ +GSGA   +G RVAVHY   + G+   +SR   G+    PYGF+ G  +  G++ KG+ LG+EGM++GG+R I VP +LA+GKKG+   IP +AT+  DV + SIK  P GT
Sbjct:   57 AAVGVGVAGGEAGAVSTSRRALRASKIP----------ESEFTSLPNGLKYYDIKVGSGAKAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGNSE-RGNVLKGLDLGVEGMKVGGQRLIIVPPELAYGKKGVQE-IPPNATIELDVELLSIKQSPFGT 211          
The following BLAST results are available for this feature:
BLAST of NO04G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN77045.11.200e-4655.15FKBP-type peptidyl-prolyl cis-trans isomerase 9 [E... [more]
CEM08787.11.000e-4046.85unnamed protein product [Vitrella brassicaformis C... [more]
XP_005717987.17.000e-3453.85unnamed protein product [Chondrus crispus] >CDF381... [more]
OSX77013.17.700e-3349.23hypothetical protein BU14_0165s0008 [Porphyra umbi... [more]
GAQ86112.14.000e-2138.69FKBP-type peptidyl-prolyl cis-trans isomerase fami... [more]
PIA43505.12.600e-2039.41hypothetical protein AQUCO_01900123v1 [Aquilegia c... [more]
XP_024023008.17.500e-2038.76peptidyl-prolyl cis-trans isomerase FKBP16-4, chlo... [more]
XP_021836693.11.300e-1939.02peptidyl-prolyl cis-trans isomerase FKBP16-4, chlo... [more]
AEZ49159.11.700e-1938.01FKBP-type peptidyl-prolyl cis-trans isomerase [Wol... [more]
XP_004955714.11.700e-1940.72peptidyl-prolyl cis-trans isomerase FKBP16-4, chlo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009540NSK009540Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02770.1NO04G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578855gene_2049Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02770.1NO04G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02770 ID=NO04G02770|Name=NO04G02770|organism=Nannochloropsis oceanica|type=gene|length=684bp
ATGTGTGTCACGACATCGTTGCTCGTCCTGGTCGTTGCCTGCTACTGTCT
GGCCGTACCAACTCTGGCCTTCTTTCCAAGCACCGGCTCCCCGTCCACGG
TGACGACTCAAATGATGGCCACTGGCCGGGCAGGCCAGGAAGACAGCCGA
CGCAGCGCCCTCAGCAAGACTCTGGCTGGCGGACTGGGTGCCTTGTCCTT
GGCGACTGTTACACTGGGCGTGTCCCCCATTCCGGCGGCCGCCAAGGGCG
TGAAGCGGTTGAAAAATGCGCCCACCGTGAAATTGGCAAATGGGGTTGAG
TATCAGGACATGACGTTGGGCTCCGGTGCGACGCCGCATGAAGGGGATCG
TGTTGCCGTTCACTATAGCTTGTACTACAATGGCTTAGAGGTCGAGTCCA
GCCGGGATTCGAGTGGGCTGGCAGCGCGCCCGTATGGATTTAACTGGGGC
ACGGATAAGGGTACGGGGTCCATTTGCAAGGGGGTGCAGCTGGGGATGGA
GGGAATGCAGATCGGTGGGCGCCGTAAGATTACTGTGCCATCTGATTTGG
CATTTGGGAAGAAGGGGTTGCCGCCGTTTATTCCTGGGGATGCGACGGTG
CTTTTTGACGTGTCGATATGGAGCATTAAGCCTGCGGGGACGAATCCGAA
TTTGACGTTGCCTGGTCAGCAGAATTACTTCTAG
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protein sequence of NO04G02770.1

>NO04G02770.1-protein ID=NO04G02770.1-protein|Name=NO04G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MCVTTSLLVLVVACYCLAVPTLAFFPSTGSPSTVTTQMMATGRAGQEDSR
RSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVE
YQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWG
TDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATV
LFDVSIWSIKPAGTNPNLTLPGQQNYF*
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Synonyms
Publications