NO04G02650, NO04G02650 (gene) Nannochloropsis oceanica

Overview
NameNO04G02650
Unique NameNO04G02650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2496
Alignment locationchr4:706774..709269 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:706774..709269 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G02650 vs. NCBI_GenBank
Match: EWM28658.1 (hypothetical protein Naga_100177g12 [Nannochloropsis gaditana])

HSP 1 Score: 686.8 bits (1771), Expect = 8.300e-194
Identity = 373/616 (60.55%), Postives = 443/616 (71.92%), Query Frame = 0 
Query:  252 DTPPNALGSTTFGGDLTEAVYTEDG---------------------------------------------PEKDMMDEVADSLSNPLSGKLDEELKAEEMASTDAEDD----------------XXXXXXXXXXXXXXXXXXXSVTELTEDVKLTTEAVSDGVLEGAMKDIATSVVSDNVILYISSFDCDLTDINVSETDNYVTCSVAAQASKGVSTISAAFYNVPMTKRMLMHFGEQDLISGNLNSGVWQLDLKIPKAADQGVWSLGFTDQGAFYGLEITDKAGNTVDYAQQAAQETIMPLQTTLTVESYYGNTVAYPQANIQTSSGVLLYGVSCAANEATVTDESKTIICEALVIPDEAGIGKATIYLVGPTGKTVIPLVFDEYSEALLVPATNTTNAMYLLTSTLSVPTWAEAGSYSLPASGAFQSRTLSSAGTVRLVNPQALSSKPTLRVVSVADNFAPRVSSFYCNGGQEVKLDDFDAVPVSCLLTAADEYSGIAYASMHFASPSKNDAVEFSFVPDSPGLGPFPAVTVKNVREAVGAQFPPNTEPGAWTLVRAVVADNSGNYEEYTATELNNKDVQTFFLVQSSSRTFSIAPREGTPAAAEPIPGQATSG 807
            DTP NALG TTF G L EAV+T D                                              PEKDMM +VA SL NPL G LDEEL+A   +  D E +                XXXXX              +VT++TED         D +L  AMK IA S    +V LYI+SF+CDL  + VSE+DN VTCSVAA+AS GVSTI+AAFYNVPMTKR+LMHFGE+DLISG++ SGVWQL+L IPKAADQGVWSLGF DQGAFYGLE+TDK GNTV+YA+QAA ++I+PLQT+LTVESY GNTVAYPQAN+QTSSGVL+YG +C    ATVT+E+KTIICEALVIPDEAGIG +TIY+VGPT KTV+P+VFDE SEALLVPATN T  M+LLTSTL+VPTWAE G+YS+P SGA+Q RTLS A TVRL+NP  LS+KP L VVSV+D  AP +S+FYCN G++V+L D+D +PV+CLL A D+ SG++YAS+HF SPSK DAVEF+FVP SPGLGPFP  +VK V E V + FPP+TEPGAWTL RAV  DN+GNY+EYTATEL+N +VQTFFLVQSS++TFSIAP+ GT    +P PGQAT+G
Sbjct:   91 DTPDNALGKTTFDGSLEEAVFTTDADTGAGEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEKDMMKDVATSLDNPLGGPLDEELEAAAASEVDDEMETEADVPXXXXXXXXXXXXXXXGTDDDTIVKVTEVEAVTDVTEDAAAPAVPEED-ILGDAMKAIADSADDASVTLYIASFECDLEHVIVSESDNTVTCSVAAEASHGVSTITAAFYNVPMTKRILMHFGEEDLISGSVRSGVWQLELTIPKAADQGVWSLGFDDQGAFYGLEVTDKKGNTVNYAKQAAMDSIIPLQTSLTVESYAGNTVAYPQANVQTSSGVLIYGAACVDATATVTEEAKTIICEALVIPDEAGIGSSTIYMVGPTKKTVLPIVFDEDSEALLVPATNVTRTMFLLTSTLTVPTWAEPGTYSVPVSGAYQPRTLSGAATVRLINPLTLSAKPALTVVSVSDRSAPILSNFYCNNGRQVQLSDYDPLPVNCLLRATDDLSGVSYASLHFVSPSKTDAVEFAFVPSSPGLGPFPPASVKQVAENVASNFPPDTEPGAWTLARAVTTDNAGNYKEYTATELDNANVQTFFLVQSSTKTFSIAPKPGTAINPDPAPGQATTG 705
The following BLAST results are available for this feature:
BLAST of NO04G02650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28658.18.300e-19460.55hypothetical protein Naga_100177g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02650.1NO04G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02650.1NO04G02650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02650 ID=NO04G02650|Name=NO04G02650|organism=Nannochloropsis oceanica|type=gene|length=2496bp
ATGGCTCCCTTCCTAAATCTCAATGTTTTGGTGTTCGTGCTCGTCTGCCT
AGTCGCCACCACAGCTCAAAAAGCGGAGAGGAATGCGACATCCGTCGAGA
AGCCTACGACCGAGGTCGAGACGCTGCCTCTGGTCTCAGAGCCCTCCATT
GAACCTTCAACCCTACCCGACGTGCCAGCCGAAAAGCCGAAGGATGTGGT
GGCGGCGCCTGTACCCGTGATGGAGGAGAAAGAAGAGTTGGTCGTCGAGG
ACGCATCCCCCCGCAAGGCCGACTCAAAAAATGACAAGACCCCCCTTCAG
CAGGATTTAGTGACCTCACCCAATGCCTTAGGTTCGACGACATTTGGAGG
AGATCTGAATGAGGCGGTCTTTGTGACTGATGAGTCCCCCGAAAAGGCAA
TGGAGGATAACGAGCTGGACGCGGAAGATGAAGAAGTAGACGCGGAAGAT
GAAAAAGTGGACGTGGACGATGAAAAACTGGACGCGGAAGATGAGGAACT
TGACGTAGAAGATGAAGAACTTGACGCAGAGGATGAAGACTTGGACTCGG
AAGATGAAGACCTCGATTCGGAAGATGAAGACTTGGACTCGGAAGATGAA
GACCTCGATTCGGAAGATGAAGACCTCGATTCGGAAGATGAAGAGCTTGA
CGCGGAAGATAAAGACCTGGTCGCGGAAGCTACCTCGGCGACAGATTTGA
CTGGAGATGATGAGATTGTGACGATCGCTGAGACCCCTCTCCAGAATACT
CTGGATACTCCGCCCAATGCCTTGGGCTCGACGACGTTTGGAGGGGATCT
CACCGAGGCAGTCTATACAGAAGACGGACCCGAAAAGGACATGATGGACG
AGGTGGCCGACAGCTTGAGCAATCCCCTGAGCGGAAAGCTGGACGAGGAG
CTGAAAGCCGAAGAAATGGCTTCGACGGACGCAGAAGATGACGATGTGGA
CTTGGAGGATGAAGACCTAGTCGCGGAAGATGACGACGTGGAAGCTCCTT
CGGTGACTGAACTGACGGAGGACGTGAAGCTAACGACGGAGGCGGTGTCT
GATGGCGTGTTGGAAGGAGCCATGAAGGACATTGCGACCTCTGTGGTATC
TGATAATGTCATTCTCTACATTTCGTCCTTCGACTGCGACTTGACTGACA
TCAATGTGAGCGAGACGGACAACTACGTGACTTGCTCCGTGGCTGCACAG
GCTTCCAAGGGCGTTTCTACCATTAGCGCTGCGTTTTATAATGTCCCCAT
GACCAAGCGTATGCTCATGCACTTTGGTGAGCAAGACCTCATCTCCGGAA
ACCTCAATTCCGGAGTCTGGCAGCTGGACTTGAAGATTCCCAAGGCCGCT
GATCAGGGGGTATGGAGCTTGGGTTTTACTGATCAGGGCGCATTTTATGG
ATTGGAGATTACGGACAAGGCCGGGAACACGGTTGATTATGCCCAGCAGG
CCGCACAGGAGACGATCATGCCCTTGCAGACGACCCTGACGGTGGAAAGC
TATTATGGCAACACCGTGGCGTACCCGCAGGCGAACATCCAGACTTCCAG
CGGGGTATTACTGTATGGTGTGAGCTGTGCGGCGAACGAGGCGACTGTGA
CGGACGAGAGCAAGACCATCATCTGCGAAGCACTCGTCATTCCTGATGAA
GCTGGCATCGGCAAGGCTACCATCTACCTGGTCGGGCCGACGGGGAAGAC
CGTAATCCCTCTTGTCTTTGACGAGTACTCCGAGGCGTTGCTGGTGCCCG
CGACCAACACGACCAACGCCATGTACCTCCTGACTTCCACCCTCTCCGTT
CCTACCTGGGCCGAGGCTGGCTCTTACAGTCTGCCCGCGTCTGGGGCCTT
CCAATCTCGTACCTTGAGTAGTGCCGGAACAGTACGTCTGGTTAACCCTC
AGGCGCTGTCCAGCAAACCCACCCTGCGAGTAGTGAGCGTTGCCGACAAC
TTTGCCCCGCGCGTGAGCTCATTCTACTGCAATGGTGGCCAAGAAGTCAA
GCTCGATGACTTTGATGCGGTGCCTGTCAGTTGCCTCCTTACCGCCGCTG
ATGAATACTCCGGGATCGCTTACGCCTCGATGCATTTCGCCTCCCCGTCC
AAAAACGATGCGGTTGAATTTTCCTTTGTCCCTGACTCGCCTGGTCTCGG
GCCCTTCCCCGCTGTCACTGTCAAGAATGTACGCGAGGCAGTCGGTGCCC
AATTTCCCCCCAACACTGAACCAGGTGCTTGGACCCTCGTCCGTGCTGTC
GTTGCGGACAACAGTGGCAATTATGAGGAATACACGGCCACCGAGTTGAA
CAACAAGGACGTTCAAACCTTCTTCCTCGTCCAGTCTTCCTCAAGGACAT
TTTCGATCGCTCCGCGGGAGGGTACCCCTGCGGCAGCAGAGCCAATCCCT
GGACAGGCTACTAGTGGCGCGAGTCGTTCGACAATGTCCAAGGTGGCGGT
GGCAATTGGGGCGGTGGCTGTGGTTGTTGTGTGTGCGATGTCATAA
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protein sequence of NO04G02650.1

>NO04G02650.1-protein ID=NO04G02650.1-protein|Name=NO04G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=832bp
MAPFLNLNVLVFVLVCLVATTAQKAERNATSVEKPTTEVETLPLVSEPSI
EPSTLPDVPAEKPKDVVAAPVPVMEEKEELVVEDASPRKADSKNDKTPLQ
QDLVTSPNALGSTTFGGDLNEAVFVTDESPEKAMEDNELDAEDEEVDAED
EKVDVDDEKLDAEDEELDVEDEELDAEDEDLDSEDEDLDSEDEDLDSEDE
DLDSEDEDLDSEDEELDAEDKDLVAEATSATDLTGDDEIVTIAETPLQNT
LDTPPNALGSTTFGGDLTEAVYTEDGPEKDMMDEVADSLSNPLSGKLDEE
LKAEEMASTDAEDDDVDLEDEDLVAEDDDVEAPSVTELTEDVKLTTEAVS
DGVLEGAMKDIATSVVSDNVILYISSFDCDLTDINVSETDNYVTCSVAAQ
ASKGVSTISAAFYNVPMTKRMLMHFGEQDLISGNLNSGVWQLDLKIPKAA
DQGVWSLGFTDQGAFYGLEITDKAGNTVDYAQQAAQETIMPLQTTLTVES
YYGNTVAYPQANIQTSSGVLLYGVSCAANEATVTDESKTIICEALVIPDE
AGIGKATIYLVGPTGKTVIPLVFDEYSEALLVPATNTTNAMYLLTSTLSV
PTWAEAGSYSLPASGAFQSRTLSSAGTVRLVNPQALSSKPTLRVVSVADN
FAPRVSSFYCNGGQEVKLDDFDAVPVSCLLTAADEYSGIAYASMHFASPS
KNDAVEFSFVPDSPGLGPFPAVTVKNVREAVGAQFPPNTEPGAWTLVRAV
VADNSGNYEEYTATELNNKDVQTFFLVQSSSRTFSIAPREGTPAAAEPIP
GQATSGASRSTMSKVAVAIGAVAVVVVCAMS*
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Synonyms
Publications