NO04G02520, NO04G02520 (gene) Nannochloropsis oceanica

Overview
NameNO04G02520
Unique NameNO04G02520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1610
Alignment locationchr4:674480..676089 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:674480..676089 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: EWM28640.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 208.8 bits (530), Expect = 2.300e-50
Identity = 120/245 (48.98%), Postives = 147/245 (60.00%), Query Frame = 0 
Query:   43 DSRKGTAVAAAALDKKMPADTSSTFSSQEQTVEEYLKAHCSQLVGDLNAHAEGLIKNLQEELEKGKAEILALAQDNNALAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPAYQTIILHVKEGPYASCTFKLIQSKARKEFIIGRSTGKKVKDHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK-----CGGTIMTVELQQQGE 283
            ++R G++V  +  D K+  D S   +SQ+QTVEEYLK HCSQLVGDLNAHAE LIKNLQ ELE+GKAEI+ + Q  N + P                                            + T+IL V +GPYA   F+L+QSK RKEF++GRSTGKKVK+HG S+PQDPEVSTVHGR E R  G +++EDLGSTNGSFIN   LEERVP  ++T DVLK     C        L+Q GE
Sbjct:    6 EARAGSSVGVS--DLKVMGDPS--LASQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQ-GNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPG----------STFLTVILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVLKDRPGVCWADRSRQRLEQGGE 235
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: GAX10692.1 (hypothetical protein FisN_14Lh207 [Fistulifera solaris])

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-9
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0 
Query:  170 TIILHVKEGPYASCTFKLIQSKARKEFIIGRSTGKKVKDHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLKCGGTIMTVELQQQ 281
            T+ + +  G +A  +F  +  K  K  ++GRS GKK K +GVSL  D EVST HG+  V  NG   F D GS+NG+ I    ++  VP  L     +K G +I+ V    Q
Sbjct:   86 TLKIDIISGEHAGSSF-FVTPKPNKPCLLGRSKGKKFKQNGVSLCHDLEVSTTHGKFTVE-NGTFYFTDTGSSNGTLIRDEDVQVDVPYPLEDGIEMKVGQSILKVTFVSQ 194
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: XP_009526278.1 (hypothetical protein PHYSODRAFT_544888 [Phytophthora sojae] >EGZ17220.1 hypothetical protein PHYSODRAFT_544888 [Phytophthora sojae])

HSP 1 Score: 72.0 bits (175), Expect = 3.300e-9
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 0 
Query:  164 TVPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVK-DHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            ++P   +I +    GPY    F + I  K      +GRSTG+K +   G+S+P+D E+ST HG +++   G I F D  STNG+ IN + LE   P  L  D  +K
Sbjct:   58 SIPRAFSISVRCITGPYRGRKFHMDIDVKRHSSCFVGRSTGRKFRPPRGLSMPKDSELSTSHGEIKMEATGKIFFVDTDSTNGTRINDVELEAHEPYELTVDKPVK 163
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: XP_002907901.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY60984.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 72.0 bits (175), Expect = 3.300e-9
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 0 
Query:  165 VPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVKD-HGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            +P   TI +    GPY    F + +  K      +GRSTG+K +   G+S+P+D E+ST H  +++  +G + F D  STNGS I+ + LE +VP  L T   +K
Sbjct:   59 IPRAFTISVRSITGPYKGRKFSMEVDVKRHSSCFVGRSTGRKYRSPRGLSMPKDSELSTTHAEIKMETSGKVFFIDSESTNGSRIDDVGLEPKVPYELTTSKPIK 163
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: ETI45328.1 (hypothetical protein F443_10060 [Phytophthora parasitica P1569])

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-9
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  165 VPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVK-DHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            +P   TI +    GPY    F + I  K +    IGRSTG+K +   G+S+P+D E+ST HG V++   G + F D  STNG+ I+ + LE + P  L     +K
Sbjct:  103 IPRAFTIFVRAVSGPYRGRKFSMDIDVKRQSSCFIGRSTGRKFRPPRGLSMPKDSELSTSHGEVKLETTGKVFFIDSESTNGTRIDDVELEPKKPYELTISKPIK 207
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: ETK85298.1 (hypothetical protein L915_09854 [Phytophthora parasitica] >ETL91847.1 hypothetical protein L917_09682 [Phytophthora parasitica] >ETO73970.1 hypothetical protein F444_10158 [Phytophthora parasitica P1976])

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-9
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  165 VPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVK-DHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            +P   TI +    GPY    F + I  K +    IGRSTG+K +   G+S+P+D E+ST HG V++   G + F D  STNG+ I+ + LE + P  L     +K
Sbjct:  103 IPRAFTIFVRAVSGPYRGRKFSMDIDVKRQSSCFIGRSTGRKFRPPRGLSMPKDSELSTSHGEVKLETTGKVFFIDSESTNGTRIDDVELEPKKPYELTISKPIK 207
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: XP_008893119.1 (hypothetical protein PPTG_01543 [Phytophthora parasitica INRA-310] >ETN21317.1 hypothetical protein PPTG_01543 [Phytophthora parasitica INRA-310])

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-9
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  165 VPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVK-DHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            +P   TI +    GPY    F + I  K +    IGRSTG+K +   G+S+P+D E+ST HG V++   G + F D  STNG+ I+ + LE + P  L     +K
Sbjct:   95 IPRAFTIFVRAVSGPYRGRKFSMDIDVKRQSSCFIGRSTGRKFRPPRGLSMPKDSELSTSHGEVKLETTGKVFFIDSESTNGTRIDDVELEPKKPYELTISKPIK 199
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: XP_008893120.1 (hypothetical protein PPTG_01544 [Phytophthora parasitica INRA-310] >ETN21318.1 hypothetical protein PPTG_01544 [Phytophthora parasitica INRA-310])

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-9
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  165 VPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVK-DHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            +P   TI +    GPY    F + I  K +    IGRSTG+K +   G+S+P+D E+ST HG V++   G + F D  STNG+ I+ + LE + P  L     +K
Sbjct:  103 IPRAFTIFVRAVSGPYRGRKFSMDIDVKRQSSCFIGRSTGRKFRPPRGLSMPKDSELSTSHGEVKLETTGKVFFIDSESTNGTRIDDVELEPKKPYELTISKPIK 207
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: ETP43241.1 (hypothetical protein F442_09968 [Phytophthora parasitica P10297])

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-9
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  165 VPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVK-DHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            +P   TI +    GPY    F + I  K +    IGRSTG+K +   G+S+P+D E+ST HG V++   G + F D  STNG+ I+ + LE + P  L     +K
Sbjct:  103 IPRAFTIFVRAVSGPYRGRKFSMDIDVKRQSSCFIGRSTGRKFRPPRGLSMPKDSELSTSHGEVKLETTGKVFFIDSESTNGTRIDDVELEPKKPYELTISKPIK 207
[Close]
BLAST of NO04G02520 vs. NCBI_GenBank
Match: KUF67225.1 (hypothetical protein AM587_10014800 [Phytophthora nicotianae])

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-9
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  165 VPAYQTIILHVKEGPYASCTFKL-IQSKARKEFIIGRSTGKKVK-DHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK 268
            +P   TI +    GPY    F + I  K +    IGRSTG+K +   G+S+P+D E+ST HG V++   G + F D  STNG+ I+ + LE + P  L     +K
Sbjct:   21 IPRAFTIFVRAVSGPYRGRKFSMDIDVKRQSSCFIGRSTGRKFRPPRGLSMPKDSELSTSHGEVKLETTGKVFFIDSESTNGTRIDDVELEPKKPYELTISKPIK 125
The following BLAST results are available for this feature:
BLAST of NO04G02520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28640.12.300e-5048.98conserved unknown protein [Nannochloropsis gaditan... [more]
GAX10692.12.500e-937.84hypothetical protein FisN_14Lh207 [Fistulifera sol... [more]
XP_009526278.13.300e-936.79hypothetical protein PHYSODRAFT_544888 [Phytophtho... [more]
XP_002907901.13.300e-936.19conserved hypothetical protein [Phytophthora infes... [more]
ETI45328.17.400e-937.14hypothetical protein F443_10060 [Phytophthora para... [more]
ETK85298.17.400e-937.14hypothetical protein L915_09854 [Phytophthora para... [more]
XP_008893119.17.400e-937.14hypothetical protein PPTG_01543 [Phytophthora para... [more]
XP_008893120.17.400e-937.14hypothetical protein PPTG_01544 [Phytophthora para... [more]
ETP43241.17.400e-937.14hypothetical protein F442_09968 [Phytophthora para... [more]
KUF67225.17.400e-937.14hypothetical protein AM587_10014800 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009568NSK009568Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02520.1NO04G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G02520.2NO04G02520.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578771gene_2022Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100182g7gene1955Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02520.1NO04G02520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G02520.2NO04G02520.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02520 ID=NO04G02520|Name=NO04G02520|organism=Nannochloropsis oceanica|type=gene|length=1610bp
TGCTGGCTCATTCTCTTCGGCCATCAGTCATTCAGACCACTTGGGCAGAA
ATCATCACAGTCACACATTGATTGACAACTTCCGTAGCGCAGATGCAGGC
ATCCGCCTTCGACCTCGAATCACTACTTCGACTTCCCCGATCGCCAAGAG
TGCTGACCAGCGATTTTCGCCATGATGCATCGAGATCGAGAGAAGGCTCC
CCTTAGGCTCTTCCATTCCCGTTTGAGCACTTTCCATTCACTCGCAGGCA
CTCACACACCACCACATGCCCACAGAAAGTACATAACCAAGGCTATGGAC
AGTCGGAAAGGTACCGCAGTCGCTGCGGCCGCCCTGGACAAGAAGATGCC
CGCGGACACATCTTCAACGTTTTCATCGCAGGAGCAGACCGTGGAGGAGT
ACCTCAAGGCACACTGCAGCCAATTGGTAGGAGATCTGAATGCCCACGCC
GAAGGCCTCATCAAGAACTTGCAAGAAGAACTTGAGAAGGGCAAGGCCGA
GATCTTGGCGCTTGCCCAAGACAATAATGGTAGGCTTTGATGGCACCATG
AATGACGATGGGGAGGCTGGGAGGGAGGGAATGAAGGAGGCAATTAAGTC
CGTACTTATGAAAGCCACGCATTCTTACTTCCACTTCTCCACGCAAACAA
AACCAGCACTGGCTCCTGCCGCAGTACAACCACCCAGCAGTGACAGCAGC
ACTGATGCCTCCTCAGGAGGCGCTGCCACCTCTTACTCTCATCCTCGACC
AGCAGAAGCCGCCGCAGCAGCAGCCAGTGCCCCACCCACCGTCCCCGCAT
ACCAAACAATCATTCTCCACGTCAAAGAAGGCCCATATGCCAGTTGTACT
TTTAAACTGATTCAAAGCAAGGCACGGAAGGAGTTCATCATTGGAAGGTC
AACGGGAAAAAAGGTGAAGGACCATGGGGTCAGCTTGCCCCAGGACCCGG
AGGTATCGACGGTGCATGGACGGGTTGAGGTGCGGGGGAACGGCAATATA
GTTTTTGAGGACCTGGGGAGCACGAATGGGAGTTTTATCAATAGgtatgt
agatttgggatggggggcggaaataaggggggtgggagggagatggacta
ggtagtatatttgagttattttttatcattaaattctcgtcacccggctc
acatccctctttcttacctgtaccttcttaacagTATTAGTCTGGAAGAG
CGCGTGCCTCAAGTCCTTAGAACGGACGACGTGTTGAAGTGTGGTGGAAC
CATCATGACAGTGGAGCTGCAGCAACAAGGCGAAGCCCAGTGAGACTGGA
GAAAGAGTATGGAGAGAGAGATGGAGGGGAATGACAAAGTCAATTAATCG
TCTTAATTGTGGTTCTCTTCTCAGATCGTGTGTATGTTTGATTCCTTGTT
TTTCTCTCCTCTAAAAAGCAGCTGTACATGAAGAAATCAAACGGAAGCAA
GCAAGGAGATAATCGAAGGCACCGCGTGGCCTAGGAAAAAGAAATGAGTG
AATGGTTAAGCATGTTAGAGAAAACAAGGTGTTATGCTCAGTGTGTTGGT
ATGGTGGAGGCTCAGAGAGCCGACAGCAAAGACAAGGAACGAATACATAC
GAACAACAAA
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protein sequence of NO04G02520.1

>NO04G02520.1-protein ID=NO04G02520.1-protein|Name=NO04G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MMHRDREKAPLRLFHSRLSTFHSLAGTHTPPHAHRKYITKAMDSRKGTAV
AAAALDKKMPADTSSTFSSQEQTVEEYLKAHCSQLVGDLNAHAEGLIKNL
QEELEKGKAEILALAQDNNALAPAAVQPPSSDSSTDASSGGAATSYSHPR
PAEAAAAAASAPPTVPAYQTIILHVKEGPYASCTFKLIQSKARKEFIIGR
STGKKVKDHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSI
SLEERVPQVLRTDDVLKCGGTIMTVELQQQGEAQ*
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protein sequence of NO04G02520.2

>NO04G02520.2-protein ID=NO04G02520.2-protein|Name=NO04G02520.2|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MPTPKASSRTCKKNLRRARPRSWRLPKTIMVGFDGTMNDDGEAGREGMKE
AIKSVLMKATHSYFHFSTQTKPALAPAAVQPPSSDSSTDASSGGAATSYS
HPRPAEAAAAAASAPPTVPAYQTIILHVKEGPYASCTFKLIQSKARKEFI
IGRSTGKKVKDHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFI
NSISLEERVPQVLRTDDVLKCGGTIMTVELQQQGEAQ*
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Synonyms
Publications