NO04G02190, NO04G02190 (gene) Nannochloropsis oceanica

Overview
NameNO04G02190
Unique NameNO04G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3277
Alignment locationchr4:629477..632753 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:629477..632753 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR001202WW_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO04G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009579NSK009579Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02190.1NO04G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628177gene_2011Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02190.1NO04G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02190 ID=NO04G02190|Name=NO04G02190|organism=Nannochloropsis oceanica|type=gene|length=3277bp
ACCAGAGGGCCATAGTTGTCTGCCAAAGCAGGCAGCAGGGAGGACTGACA
GGGAGGACTAGCCAAGCACGACGCTTGCTCCTTCGTCGGCGAGCGGGGCA
AGGAGGCAAGACAGCAACACAATTATGAGGGCACCGGCAAGACCACAAAC
CCTGCCCTGCATGCTTATAATGCTCTTAGTGCTACAACTTTGCTGTCGCA
GCTTTGTGTCGGCCTCCTTCTTCTCTGGCGCCGCTGCTGGGACGGGGGCT
GGAGGAGGACCACCGGCAGGGGGAGGCCCTCCTCTACCGCCCAATTGGGT
CTTGTACTACGACCACGAAGGACGAGCCTATgtacgttggggatggaaga
attttctatgtaggggtcgcatcacgtaatttgtactgcagcagggggga
aaggaaaaaggagattcgcagtttccctcaattgcttctcaattctcaat
cctgaatgaagcctgcctcgctctctcatttcatgccgcgcactcttctt
tccacacccaattacaacagTACTTCAACCAAGTCGACGGTCGGCGACAA
TGGGACTATCCTGCCGAGGACGCAGCAGCTGCTGCCATTGCTGCTTCCGC
CTTTTCCGACGCCCGTCCTCCAGGCACCTACGGGGACTTCGACCTCAGTA
GCAGTAGCAGTAGCAGCAGCAGTGGCAGCGGACGATGGTACACAGCACAC
GATCAGCATGGGCAAGTGTATTATGTGGACGCGTATACGGGCATGACGAG
CTATAAGCCGCCACCGACGACGACGACAACACCGGTGGCGGCGGCAGCAG
AGATGGCGGCGGCGGGTGCAGACGGTGCTGGTGTTAGTGGCGCCGCAGAA
TTAGAAGAGTATAGGCAACAATCCGCCCCATTTTTATCCTTCGGGAAAAG
CGGAAGTGCTCATCTCTACCAGCCGTATCAGCAGCCGCAGCAGCAGCCAC
AGCAGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCACGAAGAGCGGCAGGGCGAGCTGGAATTGGAGGA
AATCCTCGAGGAAGTTATGGAAGCAGCGGAGGAAGGGATAGAGGAAGAGT
CGGCGCCAATAGGAGATGCTGTGCCTTCCGCTGCTATCGACGACGAGCAG
CAGCAGCGGCAGCGGCAACAGGAGCAGCAGCAGCAGCAGCAGCAGTCTGT
AGTAGGAGAGTGGGAGGAAGAGAAGGCTGGATTGGTCAAGGAGAAGATGG
CGCTGACACAGGAGGTGGAAAATCTCAAGGCCCGTTTGGAAGCAGAATCA
CTCGCCAGGAGCAAGGGGGGCGAGGGAGAAGGAGAGATAGAGGGCGCGTC
GATCCTGCAAGTGAGGATAGGAGAGCTTGAGACCGAGCTAGAGAAAGCTG
AAGAGACGCTGATAAACACCGTGGGTGTGTGGAAGCACAAATTAGAGGTC
ATGACTGCAGAAAGGGATTTGCTGAAAGGTGAGGTGGGGCATTTGCATGT
GTCGGTGGAGGAGAAAGAGAAGGAGGTAGTGGAGGCGTATGCAAGGGTGG
AAAAAGTAGAGGGCTTGCATCGGCAGGTGGTGGAGGACTTGAAGCGGCTG
GAGGATGTCCGGGGGATAGGATGGGAGGGGATGAAGAAGGCGGGGAGAGT
GCGGACACATGAGCGTGTGGGAGGGGAAGAAGGGGACGGGGAAGAGGGGG
AGGAGAGGGAAGGAGAATACGACGGCGAGGAAGAAGCAGTCCAGGAGGAG
GAAGTAGAAAAAGACGAGGAAGAAGGAGGAGAAGAAGACAACCACCACGA
CCACCAACAACACCAACGCTCCCTCCTTGGACGCGTCGTTTCCGCCTACG
CCCGCATCTGGGTCCCCAAAGCATTTCAACGCCCCACCGAGGAAGAACAA
GCCCTGTGGGCTCTCAATCGGACAGTGGCCCGCCTGCGTGAAAACGGCAG
TGCATTGCGCGAGATGCTTGAAAGCCGTAATAATCTGGTGGATGAGTTGC
ACTCACGGATAGAGGGGTACGAAGAAGAGGGAGAGCGTCGTCGAAAAACT
GTCCGTTGTCTGCGCGAGGCCCTGGCGGAGCTCACGGAAGAGGTGAATGC
CAAGAATGAAGAGGCGGGAGCGTTGAGACAGGAACTTAAAGGCGTAGTGC
AGGAATTTTTGTGGAAAGACGCGAATCTCACTTCATTAACCACGCGGGCA
AAGGTGGGGGAGGCACGCGTCCAGGACCTGGAAGCAGAGCTTGCGAGGGT
GGAGGGGGAGAAAGCGCAGGCCATGGCGAAAGTCGTGAGTTTGAATGCGA
AGTTGGCCGAGGCGGAGGGAAATGTGGAAGCGTTGAAGGAGGAAATGGGG
CAGGTTAGGGGGGCAGCGAAGGAGCAGGAGGAGAGGATCGTGCTGCTGGA
GGAGGAAAGGAGGGCAGTGAGCGAGCAGTTGCGGGAGGCCGTAGCGACAG
GGGCAGCAGCGTCGGATAAGGCACAGGAGTTGTATAGGGAGAGGGATCTG
TTGCGAGCTACGATAAAGGCGGCGGAGGAGGAAAAAAGGGCGAAAGAGGA
GGAGGAGAGGAGAAGGAGGGAAGAATGGGAGGCGGCGGAGGAGGAAAGGA
GGAAAATGGAGGAAGAACGGATGATCGCGGAGGTGGAGGAGAGGAGAAGG
AGGGAGGAAGAGAGGGAGGAGGACATTGGGAGACAAAGAGCTGCAGCGGA
GGTCCAGATGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGATGCTGCTGTTGCTTCTGGTGCTGCTACTGGGGGA
GACGATGCGCTTTTTGAATCCCATCCTCCACCTTCCGCGCACCTCCCTCC
TTTTCCTTTGACGGGTCATGAGCCCGAGCAGCAGCAGCAGGGACATAAAT
CAATACCGCAGCATTTGTCTCAGTCGAGGAAAGTAGAGCGCTGTTGGTGG
TATCGAATTTGGGGAGGCCATCGACCATTGGCTTGGCCATCTGCAGCATC
AAGGAAATAATAGATTTGACAGGAATGAAAAAAAGAAAGCGAAAGAGGAA
GGATGGAAATGAACTTGTGTGTATGTGTGTGTACGTGTGTGTATGTGTGT
GTAAGAGTGAGTGTGAGAGAGAGGGAGCGAGAGAGAGAGTGAGAGAGAGA
GAGAAAGAGAGAGAGAGAGAGAAAAAGAGAGTGAGAAAGAAAAAGAGAGT
GTGTGAGAGAGAGAATGATAGATAGATAGAGATATTTCAAGACCAGCTTA
GCAGCAACAACGAGAAGAACCAAAGTA
back to top

protein sequence of NO04G02190.1

>NO04G02190.1-protein ID=NO04G02190.1-protein|Name=NO04G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=899bp
MRAPARPQTLPCMLIMLLVLQLCCRSFVSASFFSGAAAGTGAGGGPPAGG
GPPLPPNWVLYYDHEGRAYYFNQVDGRRQWDYPAEDAAAAAIAASAFSDA
RPPGTYGDFDLSSSSSSSSSGSGRWYTAHDQHGQVYYVDAYTGMTSYKPP
PTTTTTPVAAAAEMAAAGADGAGVSGAAELEEYRQQSAPFLSFGKSGSAH
LYQPYQQPQQQPQQQQPQQQQQQQQQQQQQQQQQHEERQGELELEEILEE
VMEAAEEGIEEESAPIGDAVPSAAIDDEQQQRQRQQEQQQQQQQSVVGEW
EEEKAGLVKEKMALTQEVENLKARLEAESLARSKGGEGEGEIEGASILQV
RIGELETELEKAEETLINTVGVWKHKLEVMTAERDLLKGEVGHLHVSVEE
KEKEVVEAYARVEKVEGLHRQVVEDLKRLEDVRGIGWEGMKKAGRVRTHE
RVGGEEGDGEEGEEREGEYDGEEEAVQEEEVEKDEEEGGEEDNHHDHQQH
QRSLLGRVVSAYARIWVPKAFQRPTEEEQALWALNRTVARLRENGSALRE
MLESRNNLVDELHSRIEGYEEEGERRRKTVRCLREALAELTEEVNAKNEE
AGALRQELKGVVQEFLWKDANLTSLTTRAKVGEARVQDLEAELARVEGEK
AQAMAKVVSLNAKLAEAEGNVEALKEEMGQVRGAAKEQEERIVLLEEERR
AVSEQLREAVATGAAASDKAQELYRERDLLRATIKAAEEEKRAKEEEERR
RREEWEAAEEERRKMEEERMIAEVEERRRREEEREEDIGRQRAAAEVQMT
AAAAAAAAAAAAAAAAADAAVASGAATGGDDALFESHPPPSAHLPPFPLT
GHEPEQQQQGHKSIPQHLSQSRKVERCWWYRIWGGHRPLAWPSAASRK*
back to top
Synonyms
Publications