NO04G02180, NO04G02180 (gene) Nannochloropsis oceanica

Overview
NameNO04G02180
Unique NameNO04G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3683
Alignment locationchr4:625779..629461 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlycoside hydrolase family 8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:625779..629461 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0089286-hairpin_glycosidase-like
IPR002037Glyco_hydro_8
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G02180 vs. NCBI_GenBank
Match: EWM28560.1 (glycoside hydrolase family 8 [Nannochloropsis gaditana])

HSP 1 Score: 672.2 bits (1733), Expect = 1.700e-189
Identity = 334/519 (64.35%), Postives = 402/519 (77.46%), Query Frame = 0
Query:  167 RLDPR--FHSFRRADPLATSSFTDNGGDDDI------LPFNVES--GQAGGEDAFGLGGHPGFFSKDSYKILPHRREPP-KGWMDNLPPFLNPRKLTRRQQALCLMLTVAVLLFLIGIVISAARRT-GIEALGPGGDDGAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIAYPYKAEAMRLIHAMGNSKKGFFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQGPKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAYF 674
            RL PR    S RR      ++  D GG D         P  VE+  GQAG   A+     PG+  K+ ++     + PP K W D LP  L+PRK TRRQ A+CL++T   L+ +I ++  AARRT  +E L PGGD GAA TG+YRNLFTE+M K+  E+D K++  + + F GD E   LYVEVEPNMAQIINTES++VTSEGISYGMITCVH+ +QE FNRLWNWARFHMQHTAGT+ +FFAWRVT+GGLL+DAKDV+PAPDAEAYIA ALI AHRKWGS+ AYPYKAEA+RL+  MG  ++GFF++DGKATFNPTDWG  HSNPSYHLPHFY+AFARF+ NEG+ RA+ FWS +A +SR +FHVA++ KTGL+PDYTTL+GK A DPNL GH+NFQWDAWRAPANVAVDWAWWN DGWQ K+ADR L FFASQGP+Y SQ+T DG++ADNN+GHD GLV+MNAVV LA +D+ L  SFV+ELW+  +P GKGRYYPAMLYMMSLLHCSG+F+AYF
Sbjct:  218 RLPPRPPKPSGRREAAARLAATYDVGGADYAPSASLDFPSRVEAGQGQAGLGSAYD-SQAPGWAGKELHRGRRRGQPPPRKHWTDALPAVLDPRKYTRRQAAVCLIMTTLALIVMIVVLSMAARRTIEVEGLLPGGDQGAAVTGVYRNLFTELMAKTPAESDVKVQEAYAHLFHGDPETEALYVEVEPNMAQIINTESDMVTSEGISYGMITCVHMDEQEPFNRLWNWARFHMQHTAGTFASFFAWRVTKGGLLVDAKDVIPAPDAEAYIAMALITAHRKWGSTPAYPYKAEALRLLRVMGQWQRGFFSRDGKATFNPTDWGSTHSNPSYHLPHFYEAFARFMANEGESRASGFWSGAARKSRFYFHVASNKKTGLMPDYTTLDGKPAPDPNLGGHTNFQWDAWRAPANVAVDWAWWNADGWQPKFADRILAFFASQGPEYASQYTTDGQVADNNTGHDPGLVAMNAVVVLAARDQALKPSFVRELWDLPIPSGKGRYYPAMLYMMSLLHCSGKFKAYF 735          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: XP_005856116.1 (glycoside hydrolase family 8 [Nannochloropsis gaditana CCMP526] >EKU20252.1 glycoside hydrolase family 8 [Nannochloropsis gaditana CCMP526] >EWM25803.1 glycoside hydrolase family 8 [Nannochloropsis gaditana])

HSP 1 Score: 342.0 bits (876), Expect = 4.100e-90
Identity = 175/387 (45.22%), Postives = 236/387 (60.98%), Query Frame = 0
Query:  293 GAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEV-----EPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIAYPYKAEAMRLIHAMGNSKKGFFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQG-PKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAYF 674
            GAA  G+YRNLF E++ KS  E + KL+  W   F+GD+    +YV V        +  ++NTES  VTSE +SYGM+  V   ++E F+ LW+WA  +M+H  G Y+ FFAW+ +  G  +D     PAPDAE +IATALI A+ +W S   Y Y+ EA+ L+  MG+ ++G FTK G+ T NP    +  +NPSYHLPHFY+ +ARFL + G  + A F+ ++A +SR+  H A D  TGL  DYT  EG G  D  L GHSNFQWDAWR  ANVAVDW+WW  D WQQ+ AD    F   QG   Y S + ++G        H  GLV++NAV +LA  D  + S+FV ELW   +P  + RYY  ML  +SLL  SGR+++ +
Sbjct:  386 GAAEGGLYRNLFAEMLHKSDAEVEKKLQDTWRFLFEGDVSTEAIYVPVGETPEGDKLGYVLNTESGWVTSEAMSYGMMVAVQYDRRETFDALWSWASRYMRHVTGRYKGFFAWKCSLAGRKLDG---TPAPDAEEWIATALIFANNRWMSQGRYDYEKEAVALLLGMGDPRRGMFTKHGEVTLNPVRPVI--TNPSYHLPHFYEVWARFLNDRGQYQLASFYLQAAERSRRLLHKAVDQHTGLSADYTDYEGVGVKD--LAGHSNFQWDAWRVVANVAVDWSWWRRDAWQQREADTLQAFLIRQGIQDYPSTYALNGTAL--LKSHSVGLVAVNAVASLAATDRNVASAFVAELWNAAIPRNQWRYYNGMLVFLSLLQVSGRYRSLY 763          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: WP_026073703.1 (glycoside hydrolase [Acetivibrio cellulolyticus])

HSP 1 Score: 295.8 bits (756), Expect = 3.400e-76
Identity = 169/422 (40.05%), Postives = 234/422 (55.45%), Query Frame = 0
Query:  259 CLMLTVAVLLFLIGIVISAARRTGIEALGPGGDDGAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAM------GNSKKGFFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQG-PKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAY 673
            C++  + + L L  +     + +   A G     GA  T  YRNLF E+  KS  E D KL+  +D  F GD     L+  V  + A I++   N V SEG+SYGM+ CV + K++ F+ LW WA+ +M H  G ++ FFAW+ +  G      D  PA D E Y AT+L+ A  +WG     Y Y AEA  L+ AM      G     F   + K  F PT      S+PSYHLP FY+ +A + + +       FWS +A  SR+FF  A +  TGL PDY   +G         GH++F++DAWR  +N+AVD+AWW  D WQ  +ADR  GFF  +G   YG+QFT+ G  +  +S H  GLV+MNAV +LA+ ++   + FV+ELW+  +P GK RYY  MLYMM LLHCSG F+ +
Sbjct:    4 CILYLLTISLVLTALSFPIGKNSVKAASG-----GAYETNTYRNLFAEI-GKSQSEIDAKLQKAFDQMFYGDDSTQRLFYPVGTDKAYIMDVGDNDVRSEGMSYGMMICVQMDKKKEFDMLWKWAKEYMYHADGQFKGFFAWQCSTSG---SKMDNTPASDGEEYFATSLLFASNRWGDGTGIYNYSAEAKALLDAMLHQSDDGVGVNMFNKTEKKVVFCPTSGADAFSDPSYHLPAFYELWALWGEKDN-----SFWSDAASASRQFFQKATNSTTGLAPDYANFDGSPKDVSWSSGHADFRFDAWRVASNIAVDYAWWGKDSWQVTFADRIQGFFYKEGISSYGNQFTVSG--SKLSSDHSPGLVAMNAVASLASTNKS--NEFVEELWKVSIPSGKWRYYDGMLYMMGLLHCSGNFKIW 407          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: CDD73951.1 (endo-1 4-beta-xylanase [Clostridium sp. CAG:62])

HSP 1 Score: 293.1 bits (749), Expect = 2.200e-75
Identity = 164/388 (42.27%), Postives = 223/388 (57.47%), Query Frame = 0
Query:  293 GAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAM------GNSKKGFFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQG-PKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAY 673
            GA  TG YRNLF E +  S  E D K+E  W  +F G  E+  +Y  V  +MA I   +++ V SEG+SYGM+ CV + KQE FNRLW WA+ +MQH +G YE +FAW++ + G +   KD  PA D E Y AT+L+ A  +WG+    Y Y  EA  ++  M      G     F        F P       S+PSYHLP FY+ +A   + + D     FW ++A  SR+ F  A + KTGL PDY+   G    + N   H++F++DAWR  AN+A D+AWW  D W   +A+R   FF  QG   YG+Q+++DGK   N+  H  GLV+MNA  +LA+ D+K   SF+++LW      GK RYY   LYMM LLHCSG+F+AY
Sbjct:  132 GAVSTGKYRNLFKE-LGYSDAEIDKKVESAWQKFFYGTDEER-IYYPVGEDMAYIYTADTDDVRSEGMSYGMMICVQMDKQEEFNRLWKWAKTYMQHKSGQYEGYFAWQMNKDGKI---KDDTPAADGEEYFATSLLFASARWGNGKGIYNYNKEAQEILKTMLHQADDGVGVNMFDRTHKMPVFCPIGNAATFSDPSYHLPAFYEVWAIKAEQDND-----FWREAAEASRQHFKDATNEKTGLGPDYSEYSGTAKHEGN---HADFRFDAWRIAANIACDYAWWAQDSWATTHANRIQSFFYDQGVDSYGNQWSLDGKNL-NSPDHSPGLVAMNATASLASSDKKSW-SFLEDLWNISPTTGKYRYYDGCLYMMGLLHCSGKFRAY 504          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: WP_012235665.1 (endo-1,4-beta-xylanase [Sorangium cellulosum] >CAN93193.1 Endo-1,4-beta-xylanase [Sorangium cellulosum So ce56])

HSP 1 Score: 286.6 bits (732), Expect = 2.000e-73
Identity = 165/408 (40.44%), Postives = 230/408 (56.37%), Query Frame = 0
Query:  294 AAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPN----MAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYET--FFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAMGNSKK---------GFFTKDGKATFNPTDWGLR-------------HSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQGPKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAY 673
            A  TG+YRNLF E   ++  E + K+   WD+ FKGD  +  +Y E E N    +AQI +  S  V SEG+SYGM+  V    Q  F+ LWNWA+ +M H   T+    +F+W++   G  +D    +PAPD E Y ATAL  A  +WG+    Y Y+AEA RL+  M N  +            T  G   FN  +  +R             H++PSYHLP FY+ +A++    G      FWS++A  SR +FH+AA P+TGL PDY   +G   +        +F++DAWR   N +VDWAWW  D  QQ+ +DR   FF +QG +YG+QFT+DG+    ++ H +GLV+MNA  +LA KD +  + FV+ LW+ D P G+ RYY  MLY M+LLH  G+FQAY
Sbjct:   68 AVDTGVYRNLFVE-NGRTQDEVNAKITAAWDHLFKGDPAQEAVYFEQEENDNGPLAQIRDIASEDVRSEGMSYGMMIAVQTDHQAEFDALWNWAKTYMFHADETHPAYGYFSWQMNFDGTPLDE---MPAPDGEEYFATALYFASGRWGNGEGIYNYRAEADRLLDLMKNRPEITGESFGNGETRTTTGSTLFNTENHQIRFTPDTGNFETNGDHTDPSYHLPAFYEIWAKY----GPEADRAFWSEAAEVSRGYFHLAAHPETGLTPDYANFDGTPKAASWKPESVDFRFDAWRTAMNWSVDWAWWAKDERQQELSDRIQAFFEAQGAEYGNQFTLDGEAL--SADHSSGLVAMNAAASLAAKDPR-SADFVQALWDLDPPSGQYRYYDGMLYFMALLHVGGQFQAY 464          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: OLA00465.1 (hypothetical protein BHW11_10790 [Clostridium sp. CAG:62_40_43])

HSP 1 Score: 282.0 bits (720), Expect = 5.000e-72
Identity = 161/388 (41.49%), Postives = 221/388 (56.96%), Query Frame = 0
Query:  293 GAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAM------GNSKKGFFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQG-PKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAY 673
            GA  T  YRNLF E +  S  E D K+E  W   F G+ E+  +Y  V  +MA I   +++ V SEG+SYGM+ CV + KQE FNRLW WA+ +MQHT+G ++ +FAW++   G  I      PA D E Y AT+L+ A  +WG+    Y Y  EA  ++  M      G     F        F P      +S+PSYHLP FY+ +A   + + D     FWS++A  SR+ F  A + KTGL PDY+   G   ++ N   H +F++DAWR  AN+A D+AWW  D W   +A+R   FF  QG   YG+Q+++DGK  +    H  GLV+MNA  +LA+ D+K   SF+++LW      GK RYY   LYMM LLHCSG+F+AY
Sbjct:  404 GAVYTEKYRNLFKE-LGYSDAEIDEKVESAWKKLFYGNDEER-IYYPVGEDMAYIYTADTDDVRSEGMSYGMMICVQMDKQEEFNRLWKWAKTYMQHTSGEFKGYFAWQMKTDGSKISG---TPASDGEEYFATSLLFASARWGNGEGIYNYNKEAQEILTTMLHQADDGQGVNMFDKTHKMPVFCPIGNAATYSDPSYHLPAFYEVWAIKAEQDND-----FWSEAAEASRQHFKDATNEKTGLGPDYSEYTGAAKNEGN---HGDFRFDAWRIAANIACDYAWWAKDTWATTHANRIQSFFYDQGVDSYGNQWSLDGK--NLGPDHSPGLVAMNATASLASSDKKSW-SFLEDLWNISPTTGKYRYYDGCLYMMGLLHCSGKFRAY 775          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: OGC02117.1 (hypothetical protein A2V82_00785 [candidate division KSB1 bacterium RBG_16_48_16])

HSP 1 Score: 281.6 bits (719), Expect = 6.500e-72
Identity = 156/393 (39.69%), Postives = 228/393 (58.02%), Query Frame = 0
Query:  293 GAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAMGNSKKG----------FFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQG-PKYGSQFTMDG-KLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAY 673
            GA  +G+Y NLF E++  S  +   K++  W+  F GD +   +Y  VEP+MA I +T  N + SEG+SYGM+  V L K+  F+RLW WA+ +MQH +G  + +FAW++   G ++D      A D E +I  AL  A  +WG+    Y Y++EA  ++ AM N ++           F  K+ +  F P       S+PSYHLPHFY+ +AR+   E      +FW  +A  SR+F   AA PKTGL+PDY   +G    DP   G  +F++DAWR   N+AVD+ W+  D W  + ++  L FF  QG   YG+ FT+DG KL+D+   H  GLV+MNAV +LA+ ++   + FV+ELW   +P G GRYY  +LYM+++L  SG F+ Y
Sbjct:   47 GAYYSGVYPNLFQELLGISESQVHAKIDSAWNQLFYGDDQTQRVYYPVEPDMAYIEDTWHNDIRSEGMSYGMMIAVQLNKRAEFDRLWKWAKTYMQHKSGARKNYFAWQLHTNGAMMDHNS---ASDGEEWIVMALFFASARWGNGTGIYNYQSEAQAILDAMLNKEETSDNDTTITNMFNKKEKQIVFVPVGNADDFSDPSYHLPHFYELWARWADKEN-----QFWCDAASASRRFLKKAAHPKTGLLPDYAHFDGT-PIDPWNGGSDDFRFDAWRVAMNLAVDYTWFAKDDWAVEQSNIMLRFFHDQGVGTYGNLFTLDGVKLSDD---HSTGLVAMNAVASLASTND-FRTDFVRELWNASIPSGAGRYYDGLLYMLAMLQVSGNFRIY 426          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: WP_080065161.1 (glycoside hydrolase [[Clostridium] hungatei] >OPX43360.1 reducing end xylose-releasing exo-oligoxylanase [[Clostridium] hungatei])

HSP 1 Score: 269.6 bits (688), Expect = 2.600e-68
Identity = 158/421 (37.53%), Postives = 227/421 (53.92%), Query Frame = 0
Query:  261 MLTVAVLLFLIGIVISAARRTGIEALGPGGDDGAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAM------GNSKKGFFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGW-QQKYADRFLGFFASQG-PKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAY 673
            M  V   L ++ IV +A   + + A       G   TG YRN+F E   ++  +   KL  ++D +FKGD     L+ E   + A I +T +N V SEG+SY M+ CV + K++ F+ LW W+R HM  ++G Y+ FFAW+    G ++   D  PA D + Y A AL+ A R+WG+    Y Y+AEA  ++ AM      G     F     +  F P       ++PSYHLP FY+ +A + KN+ D      WSK A  SR+FF  + +  TGL PDY   +G         GH++F++DAWR  +NV VD+AWW  D W    +A +   FF  +G   +GS +T+ G  +  NS H  GLV+MNAV A+A+ D      FV ELW   +P G+ RYY  MLYM+ +LH SG F+ +
Sbjct:    1 MKRVLAYLLVLVIVFTALPISFVNA----ATGGYYSTGTYRNIFVET-GRTEAQVQDKLNTMFDKFFKGDTNNQRLFYESGTDEAYIRDTGNNDVRSEGMSYAMMICVQMDKKKEFDMLWKWSRNHMYQSSGQYKGFFAWQCNYSGGIM---DTTPASDGDEYFAMALLFAARRWGNGTGIYNYEAEAQVILDAMLHQADDGVGVNMFDKTQNQVVFCPNGGSATFTDPSYHLPAFYELWALWAKNQNDRTT---WSKIAATSREFFKKSTNSTTGLNPDYANFDGTPKDVSWSSGHADFRYDAWRVASNVCVDYAWWQKDAWASTTFAPKIQSFFKKEGVSTHGSNYTLAG--SKLNSDHSPGLVAMNAVTAMAS-DAATAKPFVDELWNTAVPSGQYRYYDGMLYMLGMLHLSGNFKIW 407          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: ABB71891.1 (xylanase [uncultured bacterium])

HSP 1 Score: 268.5 bits (685), Expect = 5.700e-68
Identity = 160/404 (39.60%), Postives = 221/404 (54.70%), Query Frame = 0
Query:  291 DDGAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPN----MAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYET--FFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAMGN-------------SKKGFFTKDGK-ATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQG-PKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAY 673
            D GA  TG YRNLF E    S +E   K+   ++  F GD     +Y     N    M  + +  S  V SEG+SYGM+ CV L K++ F+ LWNWA+ +M H+   +    +FAW ++  G     KD +PAPD E Y A AL  A  +WG+    Y YKA+A RL+  M +             S    F+ + K   F P      H++PSYHLP FY+ +A +    G  + + FW ++A  SR FF ++A+PKTGL PDY   +G     P     +NFQ+DAWR   N +VDWAWW  D  Q++ +DR   FF S+G   YG+ FT+DG        H  GLV+MNA  +LA  +E+    FV+ELW   +P+G+ RYY  MLY+M+LLHCSG F+ +
Sbjct:    3 DRGAFYTGKYRNLFLEA-GYSQIEVTEKISRAFEQLFYGDRNSQTVYYPAGENDNGEMGYLSDVNSGDVRSEGMSYGMMICVQLDKKKEFDALWNWAKTYMYHSNPAHPAYGYFAWSLSTEG---RHKDQMPAPDGEEYFAMALYFAANRWGNGEGIYNYKAQADRLVSDMKDRNIITGQVGEQIQSAGNIFSLEYKMIRFTPDIANSEHTDPSYHLPAFYELWALW----GPEKDSDFWKEAAKVSRDFFFISANPKTGLTPDYANFDGTPWVCPWNPNAANFQYDAWRTVMNWSVDWAWWEKDERQRELSDRLQAFFESRGISDYGATFTLDG--VPIGGDHSQGLVAMNATASLAATNER-AHRFVRELWNASIPDGQYRYYDGMLYLMALLHCSGDFKIW 395          
BLAST of NO04G02180 vs. NCBI_GenBank
Match: AQQ75022.1 (GH8 Xylanase [uncultured bacterium])

HSP 1 Score: 266.5 bits (680), Expect = 2.200e-67
Identity = 164/433 (37.88%), Postives = 233/433 (53.81%), Query Frame = 0
Query:  253 RRQQALCLMLTVAVLLFLIGIVISAARRTGIEALGPGGDDGAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIA-YPYKAEAMRLIHAMGNSKKG----------FFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQG-PKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAYF 674
            R ++A    L V V++ L+  V  AA              GA  TG Y+NLF  ++ KS  E + KL   +   F G+     +Y  V  +MA I +  S  V +EG+SYGM+  V L K+E F+RLW WA+ +MQH +G  E +FAW     G ++D+     A D E +  TAL+ A  +WG+    Y YK EA+ +++AM +              F T+  +  F P       ++PSYHLPHFY+ +A +     D   + FW ++A  SR F      P+TGL PDY T +GK   DP   GH NFQ+DAWR   NVA+D+ W+  D W    ++R L FF+SQG   Y   +T+DGK    +   + GL +MNAV ALA   + +  SFV++LW+  +P G+GRYY  MLY++ LL  SG F+ YF
Sbjct:   25 RCEEAAMKRLCVVVMMALMFCVGRAAHA-----------KGAYYTGNYQNLFVSLLGKSNEEVNEKLYRAFTQLFYGNDTTERVYYPVGNDMAYIEDILSRDVRTEGMSYGMMIAVQLNKKEEFDRLWKWAKTYMQHKSGQREHYFAWHCNTDGTVLDSNS---ASDGEEWFVTALLFASHRWGNGEGIYNYKQEALTILNAMLSKADSSDDPHVVTTMFNTRYKQVVFVPAGEADDFTDPSYHLPHFYELWALW-----DESHSTFWKEAATASRNFLKKVIHPETGLAPDYATFDGK-PIDPWNGGHKNFQYDAWRVAMNVALDYEWFAKDRWAVLQSNRLLSFFSSQGIDSYVGLYTLDGKKL--SDFQNPGLTAMNAVAALAATVD-VRKSFVQKLWDMPIPSGEGRYYDGMLYILGLLQVSGNFRIYF 434          
The following BLAST results are available for this feature:
BLAST of NO04G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28560.11.700e-18964.35glycoside hydrolase family 8 [Nannochloropsis gadi... [more]
XP_005856116.14.100e-9045.22glycoside hydrolase family 8 [Nannochloropsis gadi... [more]
WP_026073703.13.400e-7640.05glycoside hydrolase [Acetivibrio cellulolyticus][more]
CDD73951.12.200e-7542.27endo-1 4-beta-xylanase [Clostridium sp. CAG:62][more]
WP_012235665.12.000e-7340.44endo-1,4-beta-xylanase [Sorangium cellulosum] >CAN... [more]
OLA00465.15.000e-7241.49hypothetical protein BHW11_10790 [Clostridium sp. ... [more]
OGC02117.16.500e-7239.69hypothetical protein A2V82_00785 [candidate divisi... [more]
WP_080065161.12.600e-6837.53glycoside hydrolase [[Clostridium] hungatei] >OPX4... [more]
ABB71891.15.700e-6839.60xylanase [uncultured bacterium][more]
AQQ75022.12.200e-6737.88GH8 Xylanase [uncultured bacterium][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009581NSK009581Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02180.1NO04G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578732gene_2010Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g111gene1964Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02180.1NO04G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02180 ID=NO04G02180|Name=NO04G02180|organism=Nannochloropsis oceanica|type=gene|length=3683bp
ACAGGAAGGCGCGCTTTTACAAGCCGGGCAAGTTCCTTCAAGACCAGCAG
TTCCCGAAGCCAGGAGAGGCGCGTTGATCTCTTGACGAGCTGGGGGGCAA
TGGGTCGCAACCTGGTGGCCTCTGCCACCGACGACATCGACTATgtaagt
acataccgcaaaggacacatgaacgagattgccttaacgtgtattgggga
aagtggcggtctccgaccaagtcgacgtcaataggagcgaagatttgtcc
tttcttgcagggcccgtcgagcggcacgtccagacggtttccaaaggctt
gaccgtgcgcacgccggcatgcctggagggaaaggcggggaagagacgcg
tgaaggagacgagagtgcactgtggagtgtagttggcaatgtccaccccc
gctttattccggaacaaacgttggccccaaagtttactctaggcatcttc
tacaggcacactattttcgcctttgggtgtgcttgaccggagcttggctg
catgtgtgcgttaataagcaggctgaacttgtctgctgtcatgccacgtg
cttgcttttccctttcttggctgtctgccagcttctccccccccccacct
ccccacgggaatccgtaattaggtgacctcccctctagaccatctactaa
gtccccatactcccctccccccgtcctttttaccctatgctacaataagC
CTTTCAACACAGACGTCAGAAGCAGTCCTTGGCGCGTCCCCCGCGAAAAT
GGCCCAGCCGCAGCCAATGCTGCCCCCAACACCTCCGCTTTTACCGAGAA
CTCTTTTCGCAAACACACGAAGGGCATAATACCAGCCGATTCCATCCCCT
CTACACTTCCTGCCACATCCTCAGTGAAAGCAGCCGCAGTCATGGGCGGG
AGGGCTTCGCCTGGTCGTAAGTCGTCACCTTCCTCGGACTTAACCTCCAC
CTCCTCCATCTCCTCCATTTCAGCACATGGCCCCTCCTCCATCTGGTCAG
CCACTGCTGCGGCTGCCATTGCCGCTGCATCTTTTAAAGGGAAAACCAGC
AGCACCAACAGAAGCGTTCATTCTCCTCGTCCTCCCAAGCCCCTCCGTCC
ACACACCCCTACCTCCAATACTACAGACGGCAGTCTTCCCACCGCCAATT
CTCGATTGGACCCCCGTTTCCATTCATTTCGGCGTGCCGACCCCTTGGCT
ACCTCCTCCTTCACCGACAATGGTGGAGATGACGACATTCTGCCTTTTAA
CGTCGAATCAGGGCAAGCAGGGGGGGAGGACGCGTTTGGATTAGGGGGGC
ACCCCGGTTTTTTTTCCAAGGATTCGTACAAAATCCTCCCTCACCGACGA
GAGCCACCGAAAGGGTGGATGGACAACTTGCCTCCGTTTCTGAATCCTCG
CAAATTGACGCGTCGACAGCAAGCGCTGTGCCTGATGCTTACTGTGGCCG
TCCTTCTTTTCCTGATCGGCATTGTCATTTCAGCGGCAAGGCGGACAGGC
ATCGAAGCCCTTGGCCCTGGGGGGGATGACGGCGCGGCGGGGACGGGCAT
TTATAGGAATCTCTTCACAGAGGTGATGGATAAGTCTATTGTTGAGACGG
ACACGAAATTGGAGGGGGTATGGGACAACTATTTCAAGGGGGATATCGAA
AAGACAGGGTTGTATGTTGAAGTGGAACCAAACATGGCTCAGATTATTAA
TACGGAGAGTAATGTGGTGACTTCTGAGGGGATCAGCTATGGGATGATAA
CGTGTGTACATTTACAGAAGCAGGAGGCGTTCAACCGGCTGTGGAACTGG
GCCCGCTTTCACATGCAGCACACGGCGGGCACGTACGAGACATTTTTCGC
CTGGCGTGTCACGCGCGGTGGCCTACTCATCGATGCGAAAGACGTGGTCC
CCGCCCCGGACGCAGAAGCTTACATTGCAACAGCTCTCATAGCAGCACAT
CGGAAATGGGGCTCCAGCATTGCGTATCCATACAAAGCGGAAGCAATGCG
CCTCATCCACGCCATGGGAAACTCGAAAAAAGGCTTTTTCACCAAAGACG
GGAAAGCCACCTTCAACCCGACTGACTGGGGGCTCAGGCACTCCAACCCG
TCATACCACCTCCCCCACTTCTACCAAGCTTTCGCCCGATTCCTCAAAAA
TGAAGGCGACCCACGCGCGGCCAAGTTCTGGTCCAAGTCCGCGATGCAAA
GCCGGAAGTTCTTCCACGTGGCCGCTGATCCCAAAACGGGGCTCATTCCT
GACTACACCACGTTGGAAGGGAAGGGAGCGTCGGATCCTAATTTGGAGGG
GCATAGTAATTTTCAGTGGGATGCGTGGAGAGCCCCGGCAAATGTGGCAG
TGGACTGGGCGTGGTGGAACATGGACGGGTGGCAACAGAAGTATGCAGAT
CGTTTCTTGGGTTTTTTTGCAAGTCAAGGACCGAAGTACGGGAGTCAATT
CACAATGGATGGGAAGCTTGCCGACAACAACTCAGGGCATGATGCGGGTC
TTGTGAGCATGAATGCGGTGGTGGCATTGGCGACGAAAGATGAAAAGTTG
ATGTCTTCATTTGTGAAGGAATTGTGGGAGCAGGACATGCCGGAGGGAAA
GGGGCGGTACTACCCTGCCATGCTGTATATGATGAGTTTGTTGCATTGTT
CGGGGAGGTTCCAGGCTTATTTTTAGGGATGACGACGAGGAAGGGAACAT
GGGTAAAAGGCGTGTCGTATATTGCTCTGTCCCTTCTTCCCTTTTGTCGA
AGCGGGGAAAGGGGTGAGGAGGGAGGGGGAGACAGAGGCGGGACCTTCAT
TTTTGGCTTTTAAACGTCACACTTGTTCCCTTACATTGAGGGAATACGTA
GTGATGGATCATGTAGTGCGTGTGTATATCTGTTGATTATGTGACAAAGA
GTGCGTGTGGGTCTGGGTGCGTGCCGCTCCGTAAGAGGAGGCGAGGCAGG
CATATCTGAAAAGAGATACGGTGAGACCGGTGTGGAGAAAATGAATGAGG
AGGCAGGAGGAAGCCGGCAGTACTCTTTGCTTCGCATAGATCAAGTGAAT
CGGAAAAAAGACGACGGGGTGCATTTTTCACTCTCAGGAAAAAGGAGAAT
TACGAAGACAGGTGTAAAAAAGAGCAGTGTTTTTTATATTAGCTCGGGAG
GTGGTTTAGGGGGGACGAGAACACGTCCGCAATAGAAGGGGGTAATGAAC
TAGTATAAGGAAGTGTTTGACGAGGACGGGCATCTATCTGTATTGAATTC
GTATCGTGTACCAGCGCGTGTGTGCGTTTTAGAAGGATACTCCACAACCA
GGGGCAGCGGCAGTTGTGGTAGTAGACGTTGTTGTTGTAGTTGTAGTACT
TGTTGTTATTCTTATTACAGTGGTGGTGGTAGTGATAGTAGTCGAAAAGA
TAAGACAAGCATATATCAAAGCAGTCACACTGAACAGTGTAAGGGGAAGG
GAGGAAGGGAGGGACGGACGGACGGAAGATAGCGTTTACGGCAACGACGA
CGAGATAAGAGCAACCACCAAAAACAGCGGGAACAAAAACGATGTGTGCA
GTAGATGCAGATCATGGAAACGCAAGTATACGAGAGCAAATAAGAAGTTA
GGAAAACGGGACTTTCAGTTAACACACTTTCCCACCGAACCAGATAGACA
TATAGTAGAAATCTGTCCTGGCTTTTGACGTGA
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protein sequence of NO04G02180.1

>NO04G02180.1-protein ID=NO04G02180.1-protein|Name=NO04G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MGRNLVASATDDIDYPFNTDVRSSPWRVPRENGPAAANAAPNTSAFTENS
FRKHTKGIIPADSIPSTLPATSSVKAAAVMGGRASPGRKSSPSSDLTSTS
SISSISAHGPSSIWSATAAAAIAAASFKGKTSSTNRSVHSPRPPKPLRPH
TPTSNTTDGSLPTANSRLDPRFHSFRRADPLATSSFTDNGGDDDILPFNV
ESGQAGGEDAFGLGGHPGFFSKDSYKILPHRREPPKGWMDNLPPFLNPRK
LTRRQQALCLMLTVAVLLFLIGIVISAARRTGIEALGPGGDDGAAGTGIY
RNLFTEVMDKSIVETDTKLEGVWDNYFKGDIEKTGLYVEVEPNMAQIINT
ESNVVTSEGISYGMITCVHLQKQEAFNRLWNWARFHMQHTAGTYETFFAW
RVTRGGLLIDAKDVVPAPDAEAYIATALIAAHRKWGSSIAYPYKAEAMRL
IHAMGNSKKGFFTKDGKATFNPTDWGLRHSNPSYHLPHFYQAFARFLKNE
GDPRAAKFWSKSAMQSRKFFHVAADPKTGLIPDYTTLEGKGASDPNLEGH
SNFQWDAWRAPANVAVDWAWWNMDGWQQKYADRFLGFFASQGPKYGSQFT
MDGKLADNNSGHDAGLVSMNAVVALATKDEKLMSSFVKELWEQDMPEGKG
RYYPAMLYMMSLLHCSGRFQAYF*
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Synonyms
Publications