jgi.p|Nanoce1779_2|578732, gene_2010 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578732
Unique Namegene_2010
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:556211..559775 +

Link to JBrowse

Properties
Property NameValue
TranscriptId578818
ProteinId578732
Product nameSix-hairpin glycosidase-like protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:556211..559775 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02180NO04G02180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578732mRNA_2010-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578732mRNA_2010Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|578732

>mRNA_2010-protein ID=mRNA_2010-protein|Name=jgi.p|Nanoce1779_2|578732|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MGGRASPGRKSSPSSDLTSTSSISSISAHGPSSIWSATAAAAIAAASFKG
KTSSTNRSVHSPRPPKPLRPHTPTSNTTDGSLPTANSRLDPRFHSFRRAD
PLATSSFTDNGGDDDILPFNVESGQAGGEDAFGLGGHPGFFSKDSYKILP
HRREPPKGWMDNLPPFLNPRKLTRRQQALCLMLTVAVLLFLIGIVISAAR
RTGIEALGPGGDDGAAGTGIYRNLFTEVMDKSIVETDTKLEGVWDNYFKG
DIEKTGLYVEVEPNMAQIINTESNVVTSEGISYGMITCVHLQKQEAFNRL
WNWARFHMQHTAGTYETFFAWRVTRGGLLIDAKDVVPAPDAEAYIATALI
AAHRKWGSSIGYPYKAEAMRLIHAMGNSKKGFFTKDGKATFNPTDWGLRH
SNPSYHLPHFYEAFARFLKNEGDPRAAKFWSKSAMQSRKFFHVAADPKTG
LIPDYTTLEGKGASDPNLEGHSNFQWDAWRAPANVAVDWAWWNMDGWQQK
YADRFLGFFASQGPKYGSQFTMDGKLADNNSGHDAGLVSMNAVVALATKD
EKLMSSFVKELWEQDMPEGKGRYYPAMLYMMSLLHCSGRFQAYF*
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Synonyms
Publications