NO04G02170, NO04G02170 (gene) Nannochloropsis oceanica

Overview
NameNO04G02170
Unique NameNO04G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2661
Alignment locationchr4:622095..624755 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:622095..624755 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G02170 vs. NCBI_GenBank
Match: XP_024574593.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG38224.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 65.1 bits (157), Expect = 2.100e-7
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 0 
Query:   63 AVAHRAVGAAAGAFSGDSEAPQHHE----THPQQVMQQQQHAYGAPAGQQACSLDGQNFQACLQANPGNVDACTFLYEALQQCQRNSQ 147
            AVAHRAVGA A +FSG S+APQH E    +H QQ  Q        P  Q  C  D + F  CL +N  ++ +C F  +  +QCQ   Q
Sbjct:   19 AVAHRAVGAVASSFSGGSDAPQHQESSISSHEQQAAQ--------PPQQNQCGADQRAFLECLNSNSNDISSCQFYLDQFKQCQLQQQ 98
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BLAST of NO04G02170 vs. NCBI_GenBank
Match: GAX10587.1 (hypothetical protein FisN_14Lh085 [Fistulifera solaris])

HSP 1 Score: 65.1 bits (157), Expect = 2.100e-7
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 
Query:   63 AVAHRAVGAAAGAFSGDS--EAPQHHETHPQQVMQQQQHAYGAPAGQQACSLDGQNFQACLQANPGNVDACTFLYEALQQCQRN 145
            A+AHRAVGA AG+F G+S  EA    +  PQ + QQ       P     C++D Q F  CLQ + G+ ++C FLY+ LQQCQ+N
Sbjct:   68 AIAHRAVGAVAGSFGGNSSNEAAAPVQQQPQPMSQQ-------PMQGGVCAMDKQMFFDCLQQSKGDQESCRFLYDQLQQCQQN 144
The following BLAST results are available for this feature:
BLAST of NO04G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_024574593.12.100e-742.05Uncharacterized conserved protein [Plasmopara hals... [more]
GAX10587.12.100e-745.24hypothetical protein FisN_14Lh085 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009582NSK009582Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02170.1NO04G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578729gene_2009Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02170.1NO04G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02170 ID=NO04G02170|Name=NO04G02170|organism=Nannochloropsis oceanica|type=gene|length=2661bp
TCATCCCTCTCTGCATACGTACATCGCCAGCCATACCCGGAAACGACAAA
CACCCCTCCTCTGCAACTTCCGTCTTGCCCGACCTCTCAACAATCACAGG
GTTGCACAACACCACCTCGTTCAGCCACTTCACTTTATCCCCCATGGGGT
TAAAAACCATCAGACGTTGATTCACACCTACTTGCGGTGCTGCCAATCCT
ACCCCGTTCATCGCGTACATCACTTTAAACATATCCTTTGCCAAGGCCGC
CACTTCCGGGCCAAAGTCTGTGATTTCTGCGTTGGAGGCTCGAAGACGGG
GGTCGGGGTACTTGAGCACACGTAGATCCGTTCCTTCCACCTCGCCGGGG
TCGACTTCCTCCGCTAGCGCCGAGCCAAGAACCTTGACCCATGCTAGCCG
AATGGAATTGGCTAGGCTGCCGCCAAGCGCAGGACCAGGGCGAGAACGAA
CACCACGGATGGCTGTGGTTGTGAGGGGGAAGGGAGGGAGGAATGCAGGT
AGCAGACTCGGGCGCCGGGGACGCAGGACGGATGCTGTGGTGGCGGAGGC
GCGGCCAAGGAGGAGGAGGGTGGTTGTGGCGGTGGTTGCGACGACAGCCA
TCATGAAGGACAACCGACAATGCTGTGGCATTCGTTGGTGGAAAAGGAAA
TAATGTGATGCGCCTTTGTTTCGTGTGCGGCTGTGAAAGCGGGTGAGAGG
AACAAGGGTTAGGGGATCTGTTGAAGATGATGCGCCTGGGACCAATATAG
CACCTAGGAGAAAACCACTGATTGCTTCAAGCTTCATCACGCTATGACGT
AGTTTTTGTTGTGCCATGTTCATTAAGTGTGCAGGGGACGAGAAGGTAGA
AAGACGCAGCGGGGATATAGAGGCATTAACTCGCGATCAAGAAATTGAAT
TGGAGTGGAAACTCATCGATATTTCTCCACCACCTCAGCCTCTGATTCGA
CTGTCTCACTCACACACACTCATAGGCCGCGCCCCTACATCTACACCCTC
TCTTACTCTCTATTAGGATGGCTCGgtaagtttcgtttaagtatatccgt
gcgcggtgggtctagtgaggggaaggggagttgcggaggggagatcattt
ctcgaaaggattcaacaaggagggtgggggattggctgtgcggtacatta
ggtgagaccctacacagtgtgccgttctgcgttaagacagcaaggtggtg
tgaagctgggttagggatgggggatggggctggggttggacgctgcacaa
ggcacggggacgttggtcctccctttcccgcttccctctttccacctgtt
catgcacaagcgaccacaccacacattcttgacttctaacggcgcactta
ctctacccgacgattaaggcgacatgcggactcactcacccccgttctct
attccctcgtcttgtcttaacagTTCCCGCAGCAGCCGCCCTGCCCCCTC
CCGCGCCCCTGCCCGCGCTCCCTCCCGCTCCGTGCCGGCGGCGCCCCAGC
Ggtacgtgtgttatgttaaaactaggaagaatgcatgcagctagcacaat
atttcgcacatgtactcagcgcgtggagggtgatgtactcacctttccca
tggctttttcgtgtacattcgtctcatacattcacagCTCTGCGCCCCCT
GCCCCGCAGCAATCCCAGCAAAgtacgtacctgctgcatcaagtctgcat
accaagctcatgtctctttttatccaatccccgttccccgttctttcttc
atgaccaacgcccttttactcacacatctctcctttgcctcctttcctcg
tcgcagGCGGCGGGATGATGAGCGGTTTCGCCTCCACTATTGCCCAGGGC
TTTGCCTTCGGCACAGGCAGCGCTGTCGCTCACCGGgtatgtgtttggtc
gagaatgatgttgaaatattagcgttgagggattgctttaagactccacc
ctgaccttctcttgtgtttcgctgtctaaccttccctccccctcgtctct
ttctttccaacagGCGGTCGGTGCGGCCGCTGGCGCCTTCTCCGGCGACA
GCGAGGCGCCTCAGCATCATGAGACCCACCCTCAGCAGGTAATGCAACAG
CAGCAGCATGCTTACGGTGCCCCCGCGGGGCAACAGGCCTGCTCTTTGGA
TGGCCAGAACTTCCAGGCGTGCTTGCAGGCTAACCCCGGGAACGTTGACG
CGTGCACTTTCTTGTATGAAGCCTTACAGCAGTGCCAGCGCAACTCGCAG
TTCCAGTAAGGATATATAAACTAGGTGGATAGATTTGGAAGAGGATGGTG
AGGGGGGGGGAAGGAGGAGGAAGGGGAAGAGGTGGTTGGAGGAGGCCGAG
GAGAAAGAATAGTATAACGGGCCTCTGGTTGATAATTAAGCATTATGAGC
TGGTAGAGAACGAATGGCGGGGTACTTGGGTAACACGTGCGTGTCCCGAG
ACGTATCGCATCGCCGTTCATATCTTAGTCTTTTTATCTCACAAGTATGC
CGCTGCGGATGAGAGAGTGTCGAGAGATGGGTGAGCAGCAATGATTATAC
AAAATAGGCGAGGGAGTGGAGGGAAACTGGTTGTTGACAAACTTACAAGA
TACAAACTCATAGGGGAAAAAAAGAAAAACCCATCTAGTAATATTGATTT
CGTCTGGTTCT
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protein sequence of NO04G02170.1

>NO04G02170.1-protein ID=NO04G02170.1-protein|Name=NO04G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MARSRSSRPAPSRAPARAPSRSVPAAPQRSAPPAPQQSQQSGGMMSGFAS
TIAQGFAFGTGSAVAHRAVGAAAGAFSGDSEAPQHHETHPQQVMQQQQHA
YGAPAGQQACSLDGQNFQACLQANPGNVDACTFLYEALQQCQRNSQFQ*
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Synonyms
Publications