NO04G02120, NO04G02120 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G02120
Unique Name	NO04G02120
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2510
Alignment location	chr4:609396..611905 +

Link to JBrowse

Properties


Property Name	Value
Description	Pseudouridylate synthase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:609396..611905 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009982	pseudouridine synthase activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0009451	RNA modification
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR020103	PsdUridine_synth_cat_dom
IPR001406	PsdUridine_synth_TruA
IPR020097	PsdUridine_synth_TruA_a/b_dom

Homology

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BLAST of NO04G02120 vs. NCBI_GenBank
Match: EWM28549.1 (pseudouridylate synthase [Nannochloropsis gaditana])

HSP 1 Score: 958.7 bits (2477), Expect = 1.100e-275
Identity = 555/794 (69.90%), Postives = 602/794 (75.82%), Query Frame = 0

Query:    2 RGPHDRHSTLPLLFALLLVLPFLKXXXXXXXXXXXXLRPLQQHVAAWCLPSRQLLQSAPGL-HILSFSAFGR-TMPAPTSRRPSVAVNVRKGEKGRED--SVPPAEGTAKMP-KDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQDDMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGE---MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPLEVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAWTKELQEGWRRYARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGREEEVVGQGE--VGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQGGVAAWEEAGKKVRGPGG 786
            R PH R   L LL  LLL   F                PL+Q +AAW  P   L  S P + +  S  A  R +      R P VAV +RKG   RED   +P        P +DRKKRR+ALV+GYVGT YSGLQKSE GP EA+V+TIESVLEKALFD+GYIRESN+GDL+KIGWARCSRTDKGVHAARNVVSAKLELW DDM GD P WSERAVKEINA LPDDIRVHSCAK TKSFRPRDAVSFREY YIVPLELLRPF GTGR V  E  +ALIARF +LLVR+QGTHNFHNFTKIKSRDL++RLKAKAG SR W+H + R   EGE                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPN GGLSTAKVDG+RRFNT VVLNPLFQILRASPQNQRARNDPD                           DDL+V+HV IGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGR L+V GK FVAVTFHGSSFLYNQIRLLVGGAI VA+GLFPE AL MAL+SPYL+YSPLAPAEGLFLRHITFGRKSKNPVVM E DLPT  EM AANCP VYALLS EA  RA+ FER+RILT+I  AWT EL E WRRYAR F I++EV+AAL +K+ QWRES+ KLEEAKAARELFRRQSM TWM+REG EG     E  + G GE  VG LEKEI RSYR+WMPQRFATDLII+FRLKPGKQVGNV RGLAVGM EGRVPT AT+EELFALME +GGV AWE+AG++VR   G
Sbjct:    7 RPPHSRSPALSLLPLLLLSRNFTALITASRIRISGG--PLRQRLAAWGSP---LSPSPPPIRYSRSLGALSRPSCLLFPHRTPLVAVAMRKGADDREDCHGLPQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPD------RRKSKEERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAANCPQVYALLSKEAGQRADNFERERILTEITGAWTPELLEEWRRYARAFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGAEG-----EMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEGGVGAWEKAGRRVRDSAG 784

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BLAST of NO04G02120 vs. NCBI_GenBank
Match: XP_008869948.1 (tRNA pseudouridine(38-40) synthase [Aphanomyces invadans] >ETW00950.1 tRNA pseudouridine(38-40) synthase [Aphanomyces invadans])

HSP 1 Score: 196.1 bits (497), Expect = 4.300e-46
Identity = 184/669 (27.50%), Postives = 268/669 (40.06%), Query Frame = 0

Query:  112 RKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQ---DDMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVR---TNIYRCEGRPL-EVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAWTKELQEGWRRYARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRR-----QSMVTWMEREGREGRKEGREEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQG 769
            ++K +VALV GY GT Y G+Q  E      +V T+E  + +ALF +G I ESNYGD+ KIGW+R SRTDKGVHA+  V+S KL +     D + G   +  +    +INA+LP DIRV +  KV +SFR R+    REYEY +PL  L          E   DDAL   F+  L +++G H+FHNFT  K R    +L+A+                                                                                                    + + +R RN  D                           DD   D   + +  D +     D++   GV K ++    +IY C G  + +V G+ F+ +   G SFL+NQIR +VGGAI VATG    T  + AL + ++++ P APAEGL L    FG  +K  ++ + RD  T   + A + PN      H  +V   E E  R+L   N    KE+   W           E  AA    +  W E   +  + +  R    +      S   + +R  RE R       V+G                K +P+ F+T + I F + PG  + +   GL + + +  +P  AT E+L   M   G
Sbjct:   35 KRKVKVALVTGYTGTGYHGVQIQE----NVNVPTVEHAVREALFKAGCILESNYGDMSKIGWSRSSRTDKGVHASSIVLSGKLLVHGNRIDPVSGRIAHLPD----QINAYLPQDIRVFTATKVHQSFRAREDCILREYEYFLPLSFLSSL----CPPEISADDAL-KTFLETLPKFEGIHDFHNFT--KQRRHFYKLEAQK-------------------------------------------------------------------------------------------------LLAKERRRQRNAQD------------------------EVVDDATPDEEVVENEGDDIEAEPNDISLVNGVRKTLQRHSRSIYACRGALVPDVFGEPFIHIHLTGGSFLFNQIRCMVGGAIAVATGAMAPTLFDAALRTNHVVHVPTAPAEGLVLSSCGFG--AKQHLISLLRDHNTPRNLFAGSNPN---QAPHRVLVSDTEDELHRMLQFRNEVIYKEVVRMWH--------VSEHVAAWPTHFASWTEKFNETTDERTLRVALEKVLADDASKAAYSDRIVREAR-------VIGDAV-------------KVLPRAFSTVVCIHFGITPGAYIADAIAGLKLRILDHSLPVDATQEDLLDYMSNIG 534

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BLAST of NO04G02120 vs. NCBI_GenBank
Match: CBN78481.1 (pseudouridylate synthase, putative [Ectocarpus siliculosus])

HSP 1 Score: 195.7 bits (496), Expect = 5.600e-46
Identity = 271/723 (37.48%), Postives = 348/723 (48.13%), Query Frame = 0

Query:  114 KRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQDDMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLV---KRLKA-----KAGGS-----------------------------------------RGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEG--------RPLEVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDL-----------PTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAWTKELQEGWRRYARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGREEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQG 769
            KR+VA+V+GYVGT + G Q+S    D  +V T+E  LE AL+ +G I +SNYGDL KIGW R SRTDKGVHA++ V +AKL L Q+         S+    ++N  LPDDIR  S +KV KSFR R+  + REY Y +P ELL              DD  + +F  LL  + GTH+FHN+   K R L    KR+KA     K+GG                                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       G  +A    I    +   +                     XXXXXXXXXXXXXXXXXXXXXXXXXXX               G           Q +L+ +RT+IYRCE         RP +    +FV +   G +F+YNQIRL++GGA+G A G      +E AL++PY L  PLAPAEGL L    F R + N +V+  RDL            +KE         +  LL+ E +  A  +  K IL  +  AW        R  A+ F     ++A   EK+   ++  E L +A A              E        E R EE   +  V   E+   + Y+  +P+  AT +I KFRL PG +V  +QRG+   M +G +P  A  EE+ A +E+ G
Sbjct:   28 KRKVAIVVGYVGTAFHGWQQS---TDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTATG--MSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELL-------------PDDEALGKFRELLKLFVGTHSFHNYASTKGRQLKEVRKRVKASIDLKKSGGKPAPGPEKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPESASPRSIEGGTSGDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGEDEG----PEKQILLRELRTSIYRCEALDGIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTPYKLRVPLAPAEGLVLESQAFTRHT-NALVLDPRDLGSIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREAARWSDKHILPAVADAWET------RGTAKLF-----LEAV--EKFFVGQQQEEPLLKAIA--------------ENLSEISESERRAEEKYNKFRVLAKERGSTK-YKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGELPPLAEVEEILAFLEKIG 699

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BLAST of NO04G02120 vs. NCBI_GenBank
Match: ETI34854.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P1569] >ETM35023.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >ETO63611.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P1976])

HSP 1 Score: 183.3 bits (464), Expect = 2.900e-42
Identity = 183/684 (26.75%), Postives = 276/684 (40.35%), Query Frame = 0

Query:  105 TAKMPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQD---DMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPL-EVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAW-TKELQEGWRRY-ARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGR-EEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQGGVAAWEEAGKKVR 782
            T   P    KR+VA+V GY+GT Y GLQ ++      +V TIE  + +A+FD+G +RESN+ DL KI WAR SRTDKGVHA   V S KL + ++   D    R Y  + A   +NA LPD+IRV SC +V+K F  R     REYEY +PL  L+     G + E  D D  +A F   L RY+G H+FHNFT  +SR    +++AK    R     + RN  E E                                                            D +                           D +                                                 +LTR   +L   R +IY C G  + +  G+  + V   G +FL NQIR +VGGA+ VAT        + AL +  ++  P+APAEGL L   +FG KS    V +  D P  E  +         LLS +      +F  + I  +I+ +W  +E  + WR Y  RC+                  E+ E+L + + +  L+         + + +   ++ R E    G+  VG L           +P++FAT L +++ + PG    +++R +   +  G++P  A  E++   ++  G     +E G+K+R
Sbjct:   44 TTTKPAKLVKRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEA---LNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES-----------------------------------------------------------DDVXXXXXXXXXXXXXXXXXXXXXXXXXFEDEE-------------------------------------------------ELTR--KLLLRHRRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH--TVSLYED-PNTELAKERKDVVHRVLLSRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCY------------------EANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILGYIDNYGPANLAKE-GRKLR 569

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BLAST of NO04G02120 vs. NCBI_GenBank
Match: ETL81824.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica])

HSP 1 Score: 183.3 bits (464), Expect = 2.900e-42
Identity = 183/684 (26.75%), Postives = 276/684 (40.35%), Query Frame = 0

Query:  105 TAKMPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQD---DMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPL-EVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAW-TKELQEGWRRY-ARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGR-EEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQGGVAAWEEAGKKVR 782
            T   P    KR+VA+V GY+GT Y GLQ ++      +V TIE  + +A+FD+G +RESN+ DL KI WAR SRTDKGVHA   V S KL + ++   D    R Y  + A   +NA LPD+IRV SC +V+K F  R     REYEY +PL  L+     G + E  D D  +A F   L RY+G H+FHNFT  +SR    +++AK    R     + RN  E E                                                            D +                           D +                                                 +LTR   +L   R +IY C G  + +  G+  + V   G +FL NQIR +VGGA+ VAT        + AL +  ++  P+APAEGL L   +FG KS    V +  D P  E  +         LL+ +      +F  K I  +I+ +W  +E  + WR Y  RC+                  E+ E+L + + +  L+         + + +   ++ R E    G+  VG L           +P++FAT L +++ + PG    +++R +   +  G++P  A  E++   ++  G     +E G+K+R
Sbjct:   44 TTTKPAKLVKRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEA---LNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES-----------------------------------------------------------DDVXXXXXXXXXXXXXXXXXXXXXXXXXFEDEE-------------------------------------------------ELTR--KLLLRHRRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH--TVSLYED-PNTELAKERKDVVHRVLLNRKEDEEMRQFREKVIYKEISRSWDMEEKMDRWRAYLERCY------------------EANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPANLAKE-GRKLR 569

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BLAST of NO04G02120 vs. NCBI_GenBank
Match: OQR82135.1 (ubiquitin fusion degradation protein [Thraustotheca clavata])

HSP 1 Score: 183.3 bits (464), Expect = 2.900e-42
Identity = 183/667 (27.44%), Postives = 273/667 (40.93%), Query Frame = 0

Query:  111 DRKKRRV--ALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQDDMGGDRPYWSERAV---KEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPLE-VDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERD--LPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAWTK-ELQEGWRRYARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGREEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQG 769
            D KKR+V  ALV GY+GT + G+Q  E      +V TIE  L  ALF +G I ESNY D+ KIGW+R SRTDKGVHA+  V SAKL + +D +       + R +   + +N  LPD IR+ +  KV +SFR R+    REYEY +PL  L PF      V+      + A+ I  L +Y+G  +FHNFTK +                 +  Q +R + + E                                                  +   ++ ++ D    FN N  +NP                                               D+ ++        +G   A          L+  R  IYRC+G  +E   G  ++ +   G+SFL NQIR +VG AI VATG       E ALE+  ++  P APAEGL L   +     K P++   +D   P   EM+    P+   LL         EF    I  ++  AW + EL   W      +K     Q  LEE+       ++ L++A  A  + +++              K      +V Q     +EK+    + K +P+ FAT L I+F+L PG  V ++   L   +  G +P  A+ E+L+  +++ G
Sbjct:   17 DAKKRKVKAALVSGYLGTGFHGVQLQE----HNNVPTIEQELRNALFAAGCISESNYADMAKIGWSRSSRTDKGVHASCIVFSAKLLVDEDSIDES----TGRLIGLPEALNKHLPDTIRMFTATKVHRSFRAREDCLLREYEYFLPLSFLEPFATPTNSVQD-----MAAKIIATLPKYEGIFDFHNFTKQRG---------------SFYKQKDRKQSKKEA----------------------------------------------ALSDDDEVAESEED----FNDNYDVNP-----------------------------------------------DVSIE--------NGTRRA----------LQRHRRTIYRCQGSLIEDFHGASYIRIHLTGASFLLNQIRCMVGAAIAVATGHLTPMLFEAALETNQIVRVPTAPAEGLVLASCSL--SGKRPLISFTKDYNTPNAVEMKKYEAPH-RILLDPNEYSLVFEFRNNVIYKEVARAWNESELVANWPTAFATWK-----QRFLEEQV-----DMDALQKAVDALHVHKKE--------------KFAASTAIVRQAR---MEKD----HVKLLPRAFATSLSIRFQLLPGNYVADIVVALKECLMNGVIPVNASEEDLYKFVQDTG 506

[Close]

BLAST of NO04G02120 vs. NCBI_GenBank
Match: ETK75139.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >ETL28566.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >ETP04697.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 181.8 bits (460), Expect = 8.400e-42
Identity = 182/684 (26.61%), Postives = 276/684 (40.35%), Query Frame = 0

Query:  105 TAKMPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQD---DMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPL-EVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAW-TKELQEGWRRY-ARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGR-EEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQGGVAAWEEAGKKVR 782
            T   P    KR+VA+V GY+GT Y GLQ ++      +V TIE  + +A+FD+G +RESN+ DL KI WAR SRTDKGVHA   V S KL + ++   D    R Y  + A   +NA LPD+IRV SC +V+K F  R     REYEY +PL  L+     G + E  D D  +A F   L RY+G H+FHNFT  +SR    +++AK    R     + RN  E E                                                            D +                           D +                                                 +LTR   +L   R +IY C G  + +  G+  + V   G +FL NQIR +VGGA+ VAT        + AL +  ++  P+APAEGL L   +FG KS    V +  D P  E  +         LL+ +      +F  + I  +I+ +W  +E  + WR Y  RC+                  E+ E+L + + +  L+         + + +   ++ R E    G+  VG L           +P++FAT L +++ + PG    +++R +   +  G++P  A  E++   ++  G     +E G+K+R
Sbjct:   44 TTTKPAKLVKRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEA---LNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES-----------------------------------------------------------DDVXXXXXXXXXXXXXXXXXXXXXXXXXFEDEE-------------------------------------------------ELTR--KLLLRHRRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH--TVSLYED-PNTELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCY------------------EANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPANLAKE-GRKLR 569

[Close]

BLAST of NO04G02120 vs. NCBI_GenBank
Match: ETP32848.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P10297])

HSP 1 Score: 181.8 bits (460), Expect = 8.400e-42
Identity = 182/684 (26.61%), Postives = 276/684 (40.35%), Query Frame = 0

Query:  105 TAKMPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQD---DMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPL-EVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAW-TKELQEGWRRY-ARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGR-EEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQGGVAAWEEAGKKVR 782
            T   P    KR+VA+V GY+GT Y GLQ ++      +V TIE  + +A+FD+G +RESN+ DL KI WAR SRTDKGVHA   V S KL + ++   D    R Y  + A   +NA LPD+IRV SC +V+K F  R     REYEY +PL  L+     G + E  D D  +A F   L RY+G H+FHNFT  +SR    +++AK    R     + RN  E E                                                            D +                           D +                                                 +LTR   +L   R +IY C G  + +  G+  + V   G +FL NQIR +VGGA+ VAT        + AL +  ++  P+APAEGL L   +FG KS    V +  D P  E  +         LL+ +      +F  + I  +I+ +W  +E  + WR Y  RC+                  E+ E+L + + +  L+         + + +   ++ R E    G+  VG L           +P++FAT L +++ + PG    +++R +   +  G++P  A  E++   ++  G     +E G+K+R
Sbjct:   44 TTTEPAKLVKRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEA---LNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES-----------------------------------------------------------DDVXXXXXXXXXXXXXXXXXXXXXXXXXFEDEE-------------------------------------------------ELTR--KLLLRHRRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH--TVSLYED-PNTELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCY------------------EANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILGYIDNYGPANLAKE-GRKLR 569

[Close]

BLAST of NO04G02120 vs. NCBI_GenBank
Match: XP_008913462.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica INRA-310] >ETN01135.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica INRA-310])

HSP 1 Score: 181.4 bits (459), Expect = 1.100e-41
Identity = 182/684 (26.61%), Postives = 276/684 (40.35%), Query Frame = 0

Query:  105 TAKMPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQD---DMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPL-EVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAW-TKELQEGWRRY-ARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGR-EEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQGGVAAWEEAGKKVR 782
            T   P    KR+VA+V GY+GT Y GLQ ++      +V TIE  + +A+FD+G +RESN+ DL KI WAR SRTDKGVHA   V S KL + ++   D    R Y  + A   +NA LPD+IRV SC +V+K F  R     REYEY +PL  L+     G + E  D D  +A F   L RY+G H+FHNFT  +SR    +++AK    R     + RN  E E                                                            D +                           D +                                                 +LTR   +L   R +IY C G  + +  G+  + V   G +FL NQIR +VGGA+ VAT        + AL +  ++  P+APAEGL L   +FG KS    V +  D P  E  +         LL+ +      +F  + I  +I+ +W  +E  + WR Y  RC+                  E+ E+L + + +  L+         + + +   ++ R E    G+  VG L           +P++FAT L +++ + PG    +++R +   +  G++P  A  E++   ++  G     +E G+K+R
Sbjct:   44 TTTEPAKLVKRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEA---LNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES-----------------------------------------------------------DDVXXXXXXXXXXXXXXXXXXXXXXXXXFEDEE-------------------------------------------------ELTR--KLLLRHRRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH--TVSLYED-PNTELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCY------------------EANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPANLAKE-GRKLR 569

[Close]

BLAST of NO04G02120 vs. NCBI_GenBank
Match: KUF86371.1 (Ubiquitin fusion degradation protein 1 [Phytophthora nicotianae])

HSP 1 Score: 181.4 bits (459), Expect = 1.100e-41
Identity = 182/684 (26.61%), Postives = 276/684 (40.35%), Query Frame = 0

Query:  105 TAKMPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVLEKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQD---DMGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYIVPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSRDLVKRLKAKAGGSRGWIHQHNRNEGEGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTAPNTGGLSTAKVDGIRRFNTNVVLNPLFQILRASPQNQRARNDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPL-EVDGKKFVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPLAPAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEAVVRAEEFERKRILTQINHAW-TKELQEGWRRY-ARCFKIEKEVQAALEEKYGQWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGR-EEEVVGQGEVGTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGRVPTAATTEELFALMEEQGGVAAWEEAGKKVR 782
            T   P    KR+VA+V GY+GT Y GLQ ++      +V TIE  + +A+FD+G +RESN+ DL KI WAR SRTDKGVHA   V S KL + ++   D    R Y  + A   +NA LPD+IRV SC +V+K F  R     REYEY +PL  L+     G + E  D D  +A F   L RY+G H+FHNFT  +SR    +++AK    R     + RN  E E                                                            D +                           D +                                                 +LTR   +L   R +IY C G  + +  G+  + V   G +FL NQIR +VGGA+ VAT        + AL +  ++  P+APAEGL L   +FG KS    V +  D P  E  +         LL+ +      +F  + I  +I+ +W  +E  + WR Y  RC+                  E+ E+L + + +  L+         + + +   ++ R E    G+  VG L           +P++FAT L +++ + PG    +++R +   +  G++P  A  E++   ++  G     +E G+K+R
Sbjct:   44 TTTEPAKLVKRKVAIVTGYMGTGYHGLQLND------NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEA---LNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKD-SLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFT--RSRSYFYKMQAKRKHYRA---NYQRNAAEDES-----------------------------------------------------------DDVXXXXXXXXXXXXXXXXXXXXXXXXXFEDEE-------------------------------------------------ELTR--KLLLRHRRSIYSCSGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH--TVSLYED-PNTELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCY------------------EANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL-----------LPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPANLAKE-GRKLR 569

The following BLAST results are available for this feature:

BLAST of NO04G02120 vs. NCBI_GenBank

BLAST of NO04G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28549.1	1.100e-275	69.90	pseudouridylate synthase [Nannochloropsis gaditana...	[more]
XP_008869948.1	4.300e-46	27.50	tRNA pseudouridine(38-40) synthase [Aphanomyces in...	[more]
CBN78481.1	5.600e-46	37.48	pseudouridylate synthase, putative [Ectocarpus sil...	[more]
ETI34854.1	2.900e-42	26.75	tRNA pseudouridine(38-40) synthase [Phytophthora p...	[more]
ETL81824.1	2.900e-42	26.75	tRNA pseudouridine(38-40) synthase [Phytophthora p...	[more]
OQR82135.1	2.900e-42	27.44	ubiquitin fusion degradation protein [Thraustothec...	[more]
ETK75139.1	8.400e-42	26.61	tRNA pseudouridine(38-40) synthase [Phytophthora p...	[more]
ETP32848.1	8.400e-42	26.61	tRNA pseudouridine(38-40) synthase [Phytophthora p...	[more]
XP_008913462.1	1.100e-41	26.61	tRNA pseudouridine(38-40) synthase [Phytophthora p...	[more]
KUF86371.1	1.100e-41	26.61	Ubiquitin fusion degradation protein 1 [Phytophtho...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL079	nonsL079	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR059	ncniR059	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR109	ngnoR109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009588	NSK009588	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G02120.1	NO04G02120.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524688	gene_2001	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100009g102	gene1972	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G02120.1	NO04G02120.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G02120 ID=NO04G02120|Name=NO04G02120|organism=Nannochloropsis oceanica|type=gene|length=2510bp
ATCACAGGCAACTGGACGTATCGCAAGCCGTTTTACCGCCCCTTCCTCGA
GCCGGCTCGCGCAGGAGCCTGGGAAATGCGAGGTCCGCACGATCGTCACT
CCACCTTGCCGTTGCTGTTCGCACTGCTGCTAGTCCTCCCATTTCTCAAG
TCGTCAGCCACGGCCACCACCACCACGACGACGGTCCTTCGACCCTTGCA
GCAGCACGTGGCTGCCTGGTGCTTACCTTCTCGGCAGCTGCTGCAGTCTG
CCCCCGGCTTACACATCCTCTCTTTCAGCGCATTCGGTCGTACCATGCCT
GCTCCGACGAGTCGCCGCCCCTCTGTAGCAGTCAATGTCCGCAAAGGCGA
AAAGGGCCGCGAGGACTCTGTACCCCCCGCAGAGGGAACCGCCAAGATGC
CAAAGGATAGGAAAAAGCGGCGCGTGGCTTTGGTTCTCGGGTACGTCGGA
ACCAACTACTCTGGCCTACAGAAGTCCGAAACTGGACCTGATGAAGCAGA
CGTGATGACAATCGAGTCAGTGCTCGAAAAAGCCTTGTTTGACTCAGGCT
ATATCCGTGAAAGCAATTACGGGGACTTGGAGAAAATTGGTTGGGCCCGT
TGCTCCCGCACGGATAAAGGCGTGCATGCTGCAAGGAACGTGGTGTCGGC
TAAGCTGGAGCTGTGGCAGGATGACATGGGGGGAGATAGACCCTATTGGA
GCGAGCGGGCCGTGAAAGAGATCAATGCCTTCCTACCGGACGACATCCGC
GTACACAGCTGCGCCAAAGTCACGAAGTCATTTCGGCCCCGGGATGCGGT
CAGTTTTCGCGAGTACGAGTATATTGTGCCTCTGGAGCTGTTGAGACCTT
TTGAAGGAACGGGGAGGGAGGTCGAGGGGGAGGACGACGACGCATTGATT
GCTCGGTTCATTAACCTTTTGGTCCGTTATCAGGGCACGCACAACTTCCA
TAACTTTACCAAGATTAAGAGTCGAGACCTGGTGAAACGGTTGAAGGCGA
AGGCGGGAGGGAGCAGGGGGTGGATTCACCAGCATAATCGCAATGAGGGC
GAGGGAGAGATGGAGGGAGGGGGAGGGAGGAAAGCTATGGAAGAAGTGGT
TGAAGAGAAGGCGGAGGAGTGGCATGGTAGCAAAGCTAAGCCCGGTGGTG
GCGACAGACAGGAGGAGGGAGGGGAAGAGGGCGAGGAGGAGGACGACTGG
ACAGCACCCAACACGGGGGGGCTGAGCACGGCGAAAGTCGATGGAATTCG
TCGTTTTAATACCAATGTGGTATTAAACCCTTTATTTCAGATTCTGCGGG
CAAGTCCACAGAATCAACGAGCGAGGAATGACCCTGACAGGCGTAAGACG
AGGGAGGAGAGGGGGAAGGAAGGAGGGGATGAGGGGCAGGAAGCGAGGGA
TGCGCGGCAGAAGGTGAAGGACGATTTGAAAGTGGATCATGTCCCGATCG
GCGACCCTGCAGATGGGGTAACAACTGCTTTGTGGGACCTGACGCGGTAC
CAGGGAGTGCTAAAAATGGTGCGCACAAACATTTATCGTTGTGAGGGGCG
GCCGTTGGAGGTGGATGGGAAGAAGTTCGTGGCCGTTACATTCCATGGGT
CTTCCTTTTTGTACAATCAGATTCGATTACTGGTGGGAGGGGCAATCGGT
GTAGCGACAGGTTTGTTCCCGGAGACGGCGCTAGAAATGGCGTTGGAGAG
CCCGTATCTGCTATACTCGCCCTTGGCGCCTGCGGAAGGGTTGTTTTTAC
GGCATATCACATTTGGACGGAAGAGTAAGAATCCAGTGGTCATGATGGAG
AGGGATTTGCCGACGAAGGAGGAGATGCAGGCAGCAAACTGCCCGAACGT
GTACGCGCTGCTTTCGCACGAGGCGGTGGTACGCGCGGAAGAGTTTGAGA
GGAAGCGGATTCTGACTCAAATTAATCACGCGTGGACGAAGGAGTTGCAG
GAAGGCTGGCGGAGGTATGCGAGGTGTTTCAAGATCGAAAAGGAGGTGCA
GGCAGCGTTGGAAGAGAAATACGGTCAATGGAGGGAGAGCATCGAAAAGT
TGGAAGAGGCCAAAGCGGCACGGGAATTGTTCAGGAGGCAGAGTATGGTG
ACTTGGATGGAGAGGGAGGGGAGGGAGGGGAGGAAGGAAGGCAGGGAGGA
GGAGGTAGTGGGACAGGGGGAGGTAGGAACGTTGGAGAAAGAGATTTTTA
GGAGCTATCGGAAATGGATGCCGCAGCGGTTTGCCACAGACTTGATTATC
AAGTTTCGGTTGAAGCCGGGGAAGCAAGTGGGGAATGTCCAGAGGGGCTT
GGCGGTTGGGATGGCAGAGGGACGGGTGCCGACAGCGGCGACAACGGAGG
AGTTGTTTGCATTGATGGAAGAGCAGGGCGGGGTGGCGGCGTGGGAGGAG
GCGGGAAAGAAGGTCCGGGGTCCAGGAGGGATTGGATGGGGCGAGGGGGA
TGAGGAGGAGGAGGAGGAGGAAATGTGAGGAGAAGGAGGAGGAGGAGGAG
GAGGAGAAGG

protein sequence of NO04G02120.1

>NO04G02120.1-protein ID=NO04G02120.1-protein|Name=NO04G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=801bp
MRGPHDRHSTLPLLFALLLVLPFLKSSATATTTTTTVLRPLQQHVAAWCL
PSRQLLQSAPGLHILSFSAFGRTMPAPTSRRPSVAVNVRKGEKGREDSVP
PAEGTAKMPKDRKKRRVALVLGYVGTNYSGLQKSETGPDEADVMTIESVL
EKALFDSGYIRESNYGDLEKIGWARCSRTDKGVHAARNVVSAKLELWQDD
MGGDRPYWSERAVKEINAFLPDDIRVHSCAKVTKSFRPRDAVSFREYEYI
VPLELLRPFEGTGREVEGEDDDALIARFINLLVRYQGTHNFHNFTKIKSR
DLVKRLKAKAGGSRGWIHQHNRNEGEGEMEGGGGRKAMEEVVEEKAEEWH
GSKAKPGGGDRQEEGGEEGEEEDDWTAPNTGGLSTAKVDGIRRFNTNVVL
NPLFQILRASPQNQRARNDPDRRKTREERGKEGGDEGQEARDARQKVKDD
LKVDHVPIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCEGRPLEVDGKK
FVAVTFHGSSFLYNQIRLLVGGAIGVATGLFPETALEMALESPYLLYSPL
APAEGLFLRHITFGRKSKNPVVMMERDLPTKEEMQAANCPNVYALLSHEA
VVRAEEFERKRILTQINHAWTKELQEGWRRYARCFKIEKEVQAALEEKYG
QWRESIEKLEEAKAARELFRRQSMVTWMEREGREGRKEGREEEVVGQGEV
GTLEKEIFRSYRKWMPQRFATDLIIKFRLKPGKQVGNVQRGLAVGMAEGR
VPTAATTEELFALMEEQGGVAAWEEAGKKVRGPGGIGWGEGDEEEEEEEM
*

Synonyms

Publications