NO04G02020, NO04G02020 (gene) Nannochloropsis oceanica

Overview
NameNO04G02020
Unique NameNO04G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2344
Alignment locationchr4:585880..588223 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-binding SAP
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:585880..588223 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR003034SAP_dom
Homology
BLAST of NO04G02020 vs. NCBI_GenBank
Match: EWM28529.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 538.1 bits (1385), Expect = 3.300e-149
Identity = 294/474 (62.03%), Postives = 334/474 (70.46%), Query Frame = 0
Query:    1 MSEDLTPEMVQKMKVAELKAELTKRDLDSSGLKADLVTRLNEHIVSA---------------------GVAGEGANAAPAEPQTQEIDEPLQGEKRKEPEAAPVDDAVEAAADDASN-EQCKKARVE--XXXXXXXXXXXXXXXXXXXXXXXXXXAEXXXXXXXXXXQQQHHVSSAEYVVDTQPVVAAP-KIKKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMGGRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQM 450
            MS+ LTP+MV KMKVAELKA+LT   LD+SGLKA L  RL EHI  A                                             GEKRKEPE  P + + E  A+   + E  KKARVE                            A+          QQ     SA +V+D++PV A P  +KK KGAE+YVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQ GGRNF FVRFSDK+AAARAV+ELDRRLELHGR LTIS+TAVNDKLRF+N+P HWRADQIE AL +QGC+GVYE+E+PL  DG+SNQGFCV+EFDNHPAAQRAYR+TTT + GV MDG+RLTV+WPDGVDRSTQQQ  QR GL  QLD  MQVKN+YVGGVPVDVTE EMR+VF  +GEIDNVRLAGQAPNARRPDFAF+NYRDR+SAIRALE+LRVEP+AQIRGHAL+VEMA+PPK+ M
Sbjct:    1 MSDKLTPDMVGKMKVAELKAQLTNLGLDTSGLKAALAARLLEHITKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGEKRKEPETVPAEPSAEGGAEAGEDTETHKKARVEETNGTEMKTEEVSASEPAAAPVSTSRWGADNPVATAATDLQQG---GSAGFVLDSKPVAATPAPVKKAKGAEIYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQQGGRNFSFVRFSDKEAAARAVAELDRRLELHGRVLTISYTAVNDKLRFSNVPTHWRADQIEEALVAQGCDGVYEIEMPLAGDGISNQGFCVIEFDNHPAAQRAYRLTTTAANGVTMDGRRLTVEWPDGVDRSTQQQQMQRAGLSNQLDDAMQVKNLYVGGVPVDVTEQEMRAVFSVYGEIDNVRLAGQAPNARRPDFAFINYRDRDSAIRALEALRVEPKAQIRGHALEVEMARPPKNSM 471          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_020880195.1 (heterogeneous nuclear ribonucleoprotein R [Arabidopsis lyrata subsp. lyrata] >XP_020880196.1 heterogeneous nuclear ribonucleoprotein R [Arabidopsis lyrata subsp. lyrata] >EFH52421.1 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 143.7 bits (361), Expect = 1.800e-30
Identity = 91/279 (32.62%), Postives = 143/279 (51.25%), Query Frame = 0
Query:  172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449
            G+EVY+G +    TE DL+     +GEVTE+R+   ++ G G+ + FV F +KD A++A+  L+   E  G+ +  S T    +L   N+P +W    I+ A    G  GV  +ELP E   +  N+GF  +E+ NH  A+ + +  + PS    +D    TV W           A+ R G GG      QVK +Y+  +P D+T+  ++++FE  G+I  V +    P      + FV+Y +R S +RAL++     R +I GH LD  +AKP   Q
Sbjct:   90 GSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASKAIDTLN-STEFRGKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSGGGGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 349          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: OAP02054.1 (hypothetical protein AXX17_AT3G47100 [Arabidopsis thaliana])

HSP 1 Score: 141.4 bits (355), Expect = 9.000e-30
Identity = 91/279 (32.62%), Postives = 140/279 (50.18%), Query Frame = 0
Query:  172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449
            G+EVY+G +    TE DL+     +GEVTE+R+   +  G G+ + FV F  KD AA A+  L+   +  G+ +  S T    +L   N+P +W    I+ A    G  GV  +ELP E   +  N+GF  +E+ NH  A+ + +  + PS    +D    TV W           A+ R G GG      QVK +Y+  +P D+T+  ++++FE  G+I  V +    P      + FV+Y +R S +RAL++     R +I GH LD  +AKP   Q
Sbjct:   92 GSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLN-NTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSGGGGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 351          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: NP_190834.1 (RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >NP_001030849.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >NP_001327786.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >CAB89227.1 putative RNA binding protein [Arabidopsis thaliana] >BAD44088.1 putative RNA-binding protein [Arabidopsis thaliana] >BAD44625.1 putative RNA-binding protein [Arabidopsis thaliana] >ABJ17093.1 At3g52660 [Arabidopsis thaliana] >AEE78976.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >AEE78977.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >ANM65847.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana])

HSP 1 Score: 141.4 bits (355), Expect = 9.000e-30
Identity = 91/279 (32.62%), Postives = 140/279 (50.18%), Query Frame = 0
Query:  172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449
            G+EVY+G +    TE DL+     +GEVTE+R+   +  G G+ + FV F  KD AA A+  L+   +  G+ +  S T    +L   N+P +W    I+ A    G  GV  +ELP E   +  N+GF  +E+ NH  A+ + +  + PS    +D    TV W           A+ R G GG      QVK +Y+  +P D+T+  ++++FE  G+I  V +    P      + FV+Y +R S +RAL++     R +I GH LD  +AKP   Q
Sbjct:   91 GSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLN-NTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSGGGGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 350          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_010426887.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Camelina sativa])

HSP 1 Score: 140.6 bits (353), Expect = 1.500e-29
Identity = 92/279 (32.97%), Postives = 143/279 (51.25%), Query Frame = 0
Query:  172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449
            G+EVY+G +    TE DL+   + +GEVTE+R+   ++ G G+ + FV F +KD AA A+  L+   +  G+ +  S T    +L   N+P +W    I+ A    G  GV  +ELP E   +  N+GF  +E+ NH  A+ A +  + PS    +D    TV W           A+ R G GG      QVK +Y+  +P D+T+  ++++FE  G+I  V +    P      + FV+Y +R S +RAL++     R +I GH LD  +AKP   Q
Sbjct:   92 GSEVYLGGIPTDATEGDLKGFCNSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLAAEAIETLN-NTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYAKQKMSNPS--FKLDDNAPTVSW-----------AESRSG-GGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 350          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_020272954.1 (heterogeneous nuclear ribonucleoprotein Q-like [Asparagus officinalis])

HSP 1 Score: 140.6 bits (353), Expect = 1.500e-29
Identity = 85/280 (30.36%), Postives = 147/280 (52.50%), Query Frame = 0
Query:  168 KKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEME-LPLEADGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGH-ALDVEMAKP 445
            K  K  E+++G LD    EEDLR +F ++GE+ E+R+ M  Q G  + + FVR++D   A +AV++ + ++E+ G+    S    ND +   N+   W+ D I   L+  G E +  +  +P  ++  SN+GF +VE + +  A  AY+            G+ + VDW + +D   +++ +             +VK++Y  G+P    E ++R  F+ FGEI+ + LA    +++R DFAFVNY++RE+A+  +ES   E          + V +AKP
Sbjct:   84 KSRKKTEIFIGGLDRDAKEEDLRKVFGEVGEIVEVRMIMDGQSGKNKGYAFVRYADASQAKKAVAQFE-KVEVCGKLCGASALKGNDTIFLGNIDKKWKKDDIVKFLQEIGIEKIEAVTVMPDSSNADSNRGFALVELETNKDAVNAYK--KLQKKDAFGKGRSIKVDWAEPLDDPDEEEMK-------------KVKSVYAEGIPDSWDEEKVREPFKKFGEIERIVLARNIKSSKRKDFAFVNYQNREAALSCIESFDKEELTDNGSKVTVKVSLAKP 347          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_010515736.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R [Camelina sativa] >XP_010515737.1 PREDICTED: heterogeneous nuclear ribonucleoprotein R [Camelina sativa])

HSP 1 Score: 139.4 bits (350), Expect = 3.400e-29
Identity = 90/279 (32.26%), Postives = 143/279 (51.25%), Query Frame = 0
Query:  172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVS-NQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449
            G+EVY+G +    TE DL+   + +GEVTE+R+   ++ G G+ + FV F +KD AA A+  L+   +  G+ +  S T    ++   N+P +W    I+ A    G  GV  +ELP E   +  N+GF  +E+ NH  A+ + +  + PS    +D    TV W           A+ R G GG      QVK +Y+  +P D+T+  ++++FE  G+I  V +    P      + FV+Y +R S +RAL++     R +I GH LD  +AKP   Q
Sbjct:   90 GSEVYLGGIPTDATEGDLKGFCNSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLAAEAIESLN-NTDFRGKRIKCSTTQAKHRIFLGNVPRNWMESDIKKAANKIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSG-GGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 348          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_024367475.1 (uncharacterized protein LOC112278357 [Physcomitrella patens] >PNR26509.1 hypothetical protein PHYPA_031084 [Physcomitrella patens])

HSP 1 Score: 139.4 bits (350), Expect = 3.400e-29
Identity = 95/276 (34.42%), Postives = 141/276 (51.09%), Query Frame = 0
Query:  152 AEYVVDTQPVVAAPKIKKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMEL--PLEADGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESL 425
            AEY  + Q  +   + +K K  EVYVG LD  TTEEDL+ LF + GEV E+RL    Q G  R + FVR+S    A RA  EL   +E+ GR  T   +  ND L   N+   W+ + +   L+S   E + E+ L    + +G+ N+GF  +EF  H  A  A+R    P             D   G DRS +    Q +    + D   QVK+++V G+P    E  +R  F  +GEI+ + LA    +A+R DF FVN+ +R++A+  +++L
Sbjct:  358 AEYDAEAQHSLPFSERRKYKRLEVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAAMAKRAAEELG-TIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVVETLKSLCIERIEELTLMEDPQVEGL-NRGFAFIEFSTHKDALEAFRKLQQP-------------DAIFGADRSAKVAWAQPLYEPDE-DTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDAL 617          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_006291062.1 (heterogeneous nuclear ribonucleoprotein Q [Capsella rubella] >XP_023638619.1 heterogeneous nuclear ribonucleoprotein Q [Capsella rubella] >XP_023638621.1 heterogeneous nuclear ribonucleoprotein Q [Capsella rubella] >EOA23960.1 hypothetical protein CARUB_v10017177mg [Capsella rubella])

HSP 1 Score: 139.0 bits (349), Expect = 4.500e-29
Identity = 90/279 (32.26%), Postives = 142/279 (50.90%), Query Frame = 0
Query:  172 GAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRLKMRQQMG-GRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGV-SNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRMGLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQ 449
            G+EVY+G +    TE D++     +GEVTE+R+   ++ G G+ + FV F +KD A+ A+  L+   E  G+ +  S T    +L   N+P +W    I+ A    G  GV  +ELP E   +  N+GF  +E+ NH  A+ + +  + PS    +D    TV W           A+ R G GG      QVK +Y+  +P D+T+  ++++FE  G+I  V +    P      + FV+Y +R S +RAL++     R +I GH LD  +AKP   Q
Sbjct:   90 GSEVYLGGIPTDATEGDIKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASEAIDNLN-NTEFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNICRNRGFAFIEYYNHACAEYSKQKMSNPS--FKLDDNAPTVSW-----------AESRSG-GGDSSAS-QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE---RYEIDGHMLDCTLAKPQADQ 348          
BLAST of NO04G02020 vs. NCBI_GenBank
Match: XP_015617428.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 139.0 bits (349), Expect = 4.500e-29
Identity = 97/296 (32.77%), Postives = 153/296 (51.69%), Query Frame = 0
Query:  171 KGAEVYVGNLDPYTTEEDLRALFSQLGEVTEIRL-KMRQQMGGRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTAVNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEA-DGVSNQGFCVVEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDW--PDGVDRSTQQQAQQRMGLGGQLDGDMQ------------------VKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPNARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKP 445
            +G+EV++G L   TTEEDLR L    GE+ E+RL K ++    + F FV F+ K+AA RA+ EL  + E  GRTL  S +    +L   N+P     +++   ++ +G  GV  +E+  +  D   N+GF  VE+ NH  A  A +  + P+  V  DG +LTV W  P G   S+   AQ +   G +L G  +                  VK IYV  +P + ++ +++ +FE  GE+  V L   A +  + DF FV++ +R SA++A++      + +  G  L+V MAKP
Sbjct:  102 QGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEELHDK-EHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKG-PGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKV--DGSQLTVSWAEPKGSSDSSSAAAQLKEAAGERLHGKWEKACINKIVWTRVQPSIEMVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLP-PAKDGHKRDFGFVHFAERSSALKAVKG---SEKYEFNGQVLEVSMAKP 389          
The following BLAST results are available for this feature:
BLAST of NO04G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28529.13.300e-14962.03DNA-binding SAP [Nannochloropsis gaditana][more]
XP_020880195.11.800e-3032.62heterogeneous nuclear ribonucleoprotein R [Arabido... [more]
OAP02054.19.000e-3032.62hypothetical protein AXX17_AT3G47100 [Arabidopsis ... [more]
NP_190834.19.000e-3032.62RNA-binding (RRM/RBD/RNP motifs) family protein [A... [more]
XP_010426887.11.500e-2932.97PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
XP_020272954.11.500e-2930.36heterogeneous nuclear ribonucleoprotein Q-like [As... [more]
XP_010515736.13.400e-2932.26PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
XP_024367475.13.400e-2934.42uncharacterized protein LOC112278357 [Physcomitrel... [more]
XP_006291062.14.500e-2932.26heterogeneous nuclear ribonucleoprotein Q [Capsell... [more]
XP_015617428.14.500e-2932.77PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009600NSK009600Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02020.1NO04G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100009g92gene1980Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02020.1NO04G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02020 ID=NO04G02020|Name=NO04G02020|organism=Nannochloropsis oceanica|type=gene|length=2344bp
AGGAGTCATCACGCACGCCAGCCGGAAGCAGAGCCATGTCCGAGGACTTG
ACGCCAGAGATGGTGCAGAAGATGAAGgtatgcggtgcctgatagaaaga
atcctgatgttggttggatctacgggggactgcaggcaacacgacaagac
cacgtcctcacccgtaggtaaaccacccacataacactttctcctaacag
GTGGCGGAACTGAAGGCGGAGCTGACCAAGCGGGACCTGGACTCCAGTGG
TTTGAAGGCAGACCTGGTGACCCGTCTGAACGAACATATCGTTTCGGCCG
GCGTAGCGGGGGAAGGGGCCAATGCTGCACCGGCCGAGCCACAAACACAA
GAGATCGATGAACCTCTCCAGGGCGAAAAGCGCAAGGAGCCCGAGGCGGC
GCCGGTTGACGATGCCGTGGAAGCCGCTGCGGATGATGCCTCCAACGAAC
AGTGCAAGAAGGCCCGCGTGGAGGAAAACGAGAACGGAAGTGCCGCTGCT
CCCACCGACCCCGCTCCTGCCCCTGCCCCGACGTCGACAAGTCGTTGGAA
TGCCGAGGAGACGGTGACGACCGCGCCGGCCGAAGACCAGCAGCAGCACC
ATGTGAGCTCGGCGGAGTATGTAGTAGACACACAGCCGGTGGTGGCCGCA
CCCAAGATAAAGAAGACAAAGGGGGCCGAGGTGTATGTCGGGAACTTGGA
CCCGTACACGACGGAGGAGGATTTGCGGGCACTATTTTCACAGTTGGGTG
AGGTGACAGAGATTCGTCTGAAGATGCGACAGCAGATGGGAGGACGTAAC
TTTGGATTTGTCCGGTTTTCAGACAAGGATGCCGCAGCCCGCGCGGTGTC
GGAGTTGGATCGACGCTTGGAACTACATGGTCGTACATTGACCATTTCTT
TCACGGCTGTTAATGATAAGCTACGATTTACAAACCTGCCGATTCATTGG
CGGGCGGATCAGATTGAGGCCGCGTTGGAGTCGCAAGGCTGTGAGGGAGT
GTATGAGATGGAGTTACCTTTGGAGGCAGACGGGGTGTCAAATCAAGGGT
TTTGTGTGGTTGAATTCGACAACCATCCCGCGGCACAGCGCGCGTATCGC
ATCACGACGACACCATCGACTGGGGTGGTTATGGATGGGAAGCGACTGAC
GGTCGACTGGCCTGATGGGGTGGATCGCTCGACGCAACAGCAGGCGCAGC
AACGGATGGGGCTGGGAGGGCAACTAGACGGTGACATGCAAGTAAAGAAC
ATATATGTGGGCGGGGTGCCTGTGGATGTGACAGAGGCGGAGATGCGAAG
TGTGTTTGAGGCCTTTGGGGAGATAGACAATGTACGCTTGGCTGGGCAGG
CGCCCAATGCCCGTCGGCCCGATTTTGCCTTTGTCAACTACAGGGATCGA
GAGAGCGCGATTCGTGCTTTGGAAAGCTTGCGGGTGGAGCCCAGGGCGCA
AATTCGTGGACATGCCTTAGACGTGGAAATGGCCAAACCTCCCAAGAGTC
AGATGATGATGCAGCAGCAACAACGGGCAGCCTATGGCGCCGCTCAGGGG
TACAGTCAAGGATATCAGCAGGCGTATGCCCAAGGGACAGGTTACACGGC
GGGAGGGAGCTACTATCAGCAAACCTCGGGAGGTGCGTGGCAGCAGCAGC
CCACGGAGGCGGCGTATGGTGCGTATGGCCAGCAGGCAGCAGTGACGGGG
CAGGGAGTATGGCAACAACAAGGGTATGGCACGGCTGGCGTAGGGGGAGT
GCAGCAATCGTATGGAACGTACGGTGGACAGCAGGGGCAGCAGCAGCAAT
GGGGTGTTGGGGGACAGCAGCAGCAGGGATGGGATCAGGGGGGAACGGGG
GCGGGCGGACAGAGTTATGGACGATATTAAGTGATTGAAAGAGGGAATGG
AGGATAAGAAGAGAGAGAGAGCATGGCCAGTGTTGTCTTCCCCCGGGGGA
ACGAGAAGATAGAAAATGCCACATGCACTTGGTAGAAATGCAGGATGAGG
AGGCATGTGGGAAAGGGAGAGGGTCAAACAAATCATAACTTGCTCAACGC
TCACAAATCGGGAGAAGGGAGTGAAAGGAGAGGGGAGGGAGAGGGGAGGC
CTTGCGTGCGTCACGCGAAGATGACGAATAAATGTGAGGAATCTGGTGCG
CTGACTCTTTTCTCTCTATGAGGAGAGGCAATTGGCGTCTGTAAACCGAG
TAATCACCGCTTTATTAACACCCGCACCGTTTGAGGCAGCCATTTTGATC
AAGGGGAAAAGAAGGAAAGATGAGAGCAGGTACCCACAATAAGCAAGTGA
GTGAGAGAAGCAACAAGGCAAAAAAATATGATAACAAAACAAGC
back to top

protein sequence of NO04G02020.1

>NO04G02020.1-protein ID=NO04G02020.1-protein|Name=NO04G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MSEDLTPEMVQKMKVAELKAELTKRDLDSSGLKADLVTRLNEHIVSAGVA
GEGANAAPAEPQTQEIDEPLQGEKRKEPEAAPVDDAVEAAADDASNEQCK
KARVEENENGSAAAPTDPAPAPAPTSTSRWNAEETVTTAPAEDQQQHHVS
SAEYVVDTQPVVAAPKIKKTKGAEVYVGNLDPYTTEEDLRALFSQLGEVT
EIRLKMRQQMGGRNFGFVRFSDKDAAARAVSELDRRLELHGRTLTISFTA
VNDKLRFTNLPIHWRADQIEAALESQGCEGVYEMELPLEADGVSNQGFCV
VEFDNHPAAQRAYRITTTPSTGVVMDGKRLTVDWPDGVDRSTQQQAQQRM
GLGGQLDGDMQVKNIYVGGVPVDVTEAEMRSVFEAFGEIDNVRLAGQAPN
ARRPDFAFVNYRDRESAIRALESLRVEPRAQIRGHALDVEMAKPPKSQMM
MQQQQRAAYGAAQGYSQGYQQAYAQGTGYTAGGSYYQQTSGGAWQQQPTE
AAYGAYGQQAAVTGQGVWQQQGYGTAGVGGVQQSYGTYGGQQGQQQQWGV
GGQQQQGWDQGGTGAGGQSYGRY*
back to top
Synonyms
Publications