NO04G01980, NO04G01980 (gene) Nannochloropsis oceanica

Overview
NameNO04G01980
Unique NameNO04G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr4:579034..579831 -

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Properties
Property NameValue
DescriptionBeta-carotene isomerase D27, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:579034..579831 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038938D27-like
IPR025114DUF4033
Homology
BLAST of NO04G01980 vs. NCBI_GenBank
Match: EWM28615.1 (protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 416.4 bits (1069), Expect = 6.700e-113
Identity = 196/255 (76.86%), Postives = 221/255 (86.67%), Query Frame = 0
Query:   10 LVPTFVLAFIILTQAFLLPIPDTTSALTFRQAIASSTPAP--PRPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAALQQQKLDRVTVC 263
            +V   V+A   +  AFLLP P   +  + R    +S P+P  PRPPLPDNFYAE+LLDKVALALFRRLVQ++IG+VS+KPGYDGLIEEARH+QLQPGVTAEDQQ+MVK+CL TIAGPLVPP+YRTFMAPWFWAPFLTAIFTP FFKFLVGPN+YDVRDDG  GGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDM M+P+Y+TYECRLSFG+ PK VE+D SIPKGCL GC AV ALQ+++LDR TVC
Sbjct:    8 MVAVCVMATSTICAAFLLPSPSPRAITSCRMGAMTSNPSPVQPRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKRLDRGTVC 262          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: CBJ33737.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 295.0 bits (754), Expect = 2.300e-76
Identity = 138/215 (64.19%), Postives = 168/215 (78.14%), Query Frame = 0
Query:   41 AIASSTPAPPRPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGC-----GAVAA 251
            AIA    A  RPPL  +FY+E+LLDKVALALFR LVQ++IG+ S +PGY GLI+EA+++ +  G + EDQQ MV   LTTIAGP VPP+Y+ FMAPW WAPFLTA FTP FFKFLVGPNK D R D  PGGV+ ERCRFLEETNCKGLC +MCK+PT++FF+ETLGL M M P+++TYECRLSFG+    +EED+++P+GCL GC     GAV A
Sbjct:   79 AIAQEGVAQLRPPLAADFYSESLLDKVALALFRVLVQKEIGYKSEEPGYAGLIDEAQNYMVIQGASVEDQQDMVVRVLTTIAGPAVPPVYKLFMAPWPWAPFLTAFFTPPFFKFLVGPNKLDARKDDTPGGVFVERCRFLEETNCKGLCTNMCKIPTERFFEETLGLTMAMEPDFDTYECRLSFGLESPAMEEDDTVPRGCLSGCSCKELGAVVA 293          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: CBJ33899.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 288.5 bits (737), Expect = 2.100e-74
Identity = 132/205 (64.39%), Postives = 162/205 (79.02%), Query Frame = 0
Query:   51 RPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGC-----GAVAA 251
            RPPL  +F +E+LLDKVALALFR LVQ++IG+ S +PGY GLI+EA+++ +  G + EDQQ M    LTTIAGP VPP+Y+ FMAPW WAPFLTA FTP FFKFLVGPNK D R D  PGGV+ ERCRFLEETNCKGLC +MCK+PT++FF+ETLGL M M P+++TYECRLSFG+    +EED+++P+GCL GC     GAV A
Sbjct:   10 RPPLAADFCSESLLDKVALALFRVLVQKEIGYKSEEPGYAGLIDEAQNYMVIQGASVEDQQDMAVRVLTTIAGPAVPPVYKLFMAPWPWAPFLTAFFTPPFFKFLVGPNKLDARKDDTPGGVFVERCRFLEETNCKGLCTNMCKIPTERFFEETLGLTMAMEPDFDTYECRLSFGLESPAMEEDDTVPRGCLSGCSCKELGAVVA 214          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: CEL96006.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 233.0 bits (593), Expect = 1.100e-57
Identity = 111/226 (49.12%), Postives = 146/226 (64.60%), Query Frame = 0
Query:   47 PAPPRPPLP-------DNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAALQQQKLDRVTVCDGK 266
            P+ P   LP       D FYA    +++AL LFR  VQ+QIG+ S   GYDGLI+EA+HF L    T   Q+ MV + L +++GPL+P  +RTF+APW + P +T+I TP    FLVGP + + R+DG  GGV  +RCRFL  T CKGLCL+MCK P Q +F++ LGLDM M PN+ T EC+LSFG+ P P+EED S+P  CL  CG  + L Q+  DR  +C  K
Sbjct:   80 PSLPLSKLPHADAVDEDAFYAMNAWERMALGLFREQVQRQIGYASPMEGYDGLIDEAKHFMLVQNATTSLQEAMVLNVLRSLSGPLLPIFFRTFVAPWPYGPLMTSIVTPLLLSFLVGPVEVNRREDGRLGGVLVKRCRFLAATKCKGLCLNMCKSPAQTYFRDVLGLDMTMRPNFATCECQLSFGLAPPPIEEDVSVPSDCLGQCGWKSQLMQRPGDREMICSRK 305          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: GAX11909.1 (hypothetical protein FisN_17Lh183 [Fistulifera solaris])

HSP 1 Score: 219.5 bits (558), Expect = 1.200e-53
Identity = 106/217 (48.85%), Postives = 141/217 (64.98%), Query Frame = 0
Query:   54 LPDNFYAETLLDKVALALFRRLVQQQIGFV-STKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMA----------------PWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAALQQ 254
            L D  Y E+ LD+  L LFR  V++  G V STK G  GL+E+ + F LQ G TAE Q +MVKS L  +  P++PP YR FM+                PWF+AP+LT+  TPTFF FLVGP++ ++R DG  GG+  E+C+FL+E+ CKGLCLH CK+P Q+FF++ LGL + +SPN+ T EC+ SFG  P PV+ED + P GCL GC +  AL Q
Sbjct:  232 LEDMVYTESALDQFLLWLFRNFVEKNTGGVSSTKAGIQGLLEQGQKFMLQEGQTAESQHKMVKSTLGDLMTPVLPPFYRIFMSGIVPKLGNDMDGKQLGPWFYAPWLTSFVTPTFFGFLVGPSRPNLRKDGQLGGLIVEKCKFLQESGCKGLCLHQCKIPAQEFFQQELGLPLTVSPNFVTQECQWSFGETPLPVQEDPTFPAGCLAGCKSRDALVQ 448          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: XP_005828489.1 (hypothetical protein GUITHDRAFT_164374 [Guillardia theta CCMP2712] >EKX41509.1 hypothetical protein GUITHDRAFT_164374 [Guillardia theta CCMP2712])

HSP 1 Score: 212.6 bits (540), Expect = 1.500e-51
Identity = 103/221 (46.61%), Postives = 141/221 (63.80%), Query Frame = 0
Query:   50 PRPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMA---------PWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAALQQQKLDRVTV 262
            P   LP+  Y E+ LDKV L++FR LV ++ GF S K G  GL+E+ R + L+PG TAE Q RMV + L  +  P++PP Y+ FM+         PW WA +LT+  TPTFF FLVGP++ + R DG  GG+  E+C+FL+E+ CK LC++ CKLP QQFF + LGL + ++PN+ET EC+ SFG  P  V++D  IP+GCL  C    AL   +  R  V
Sbjct:  178 PSCSLPNVTYTESPLDKVLLSIFRSLVAKETGFQSEKEGILGLLEQGREYLLRPGQTAEAQNRMVYNTLAGLLTPVMPPFYKVFMSGIIAGKQYGPWPWAAWLTSFVTPTFFGFLVGPSRPNRRKDGQLGGLVVEKCKFLQESGCKSLCINQCKLPAQQFFSQELGLPLTVTPNFETQECQWSFGEHPIDVDKDPRIPRGCLSECPTREALVSMRESRSCV 398          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: XP_002180091.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48282.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 206.5 bits (524), Expect = 1.100e-49
Identity = 100/209 (47.85%), Postives = 133/209 (63.64%), Query Frame = 0
Query:   54 LPDNFYAETLLDKVALALFRRLVQQQIGFV-STKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMA----------------PWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGC 246
            + D  Y E+ LDK+ L++FR LV +  G V S K G  GL+++ R F L+PG T E Q +MV   L  +  P++PP Y  FM+                PWF+AP+LT++ TPTFF FLVGP++ + R DG  GG+  E+C+FL+++ CKGLCLH CKLP QQFFK+ LGL + +SPN+ T EC+ SFG  P P  ED S P GCL GC
Sbjct:  226 IEDMKYNESPLDKLLLSIFRNLVTKNTGGVTSPKEGILGLVDQGRTFMLKPGQTPEAQHKMVSDTLAGLMTPVLPPFYGIFMSGIVPKIGTEFDGKQFGPWFYAPWLTSVVTPTFFGFLVGPSRPNHRKDGQLGGLVVEKCKFLQKSGCKGLCLHQCKLPAQQFFKDELGLPLTVSPNFVTQECQWSFGESPLPASEDPSFPTGCLVGC 434          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: XP_002295256.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87560.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 203.8 bits (517), Expect = 6.800e-49
Identity = 103/220 (46.82%), Postives = 138/220 (62.73%), Query Frame = 0
Query:   50 PRPPLPDNFYAETLLDKVALALFRRLVQQQIGFV-STKPGYDGLIEEARHF---QLQPGVTAED----QQRMVKSCLTTIAGPLVPPIYRTFMA----------------PWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGC 246
            P   L D  Y ++ LDKV L++FR+LV +  G + +  PG  GL+ + R F   +L  GV+ ED    Q  MVK+ L  +  P++PP YR FM+                PWF+APFLT++ TP FF FLVGP++ + R DG  GG+  E+C+FL+E+ CKGLCLH CK+P Q+FFKE LGLD+ + PN+ T EC+ SFG  P P EED S P+GCL GC
Sbjct:  220 PDCELDDMTYNDSSLDKVLLSIFRKLVAENTGGIQNDTPGIKGLLIQGRQFMTKELPEGVSYEDHTIAQHTMVKNTLGGLMTPVLPPFYRIFMSGIVPKLGTEFDGKQLGPWFYAPFLTSMVTPIFFGFLVGPSRPNRRADGQRGGLVVEKCKFLQESGCKGLCLHQCKIPAQEFFKEELGLDLTVKPNFVTQECQWSFGETPLPPEEDPSFPRGCLVGC 439          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: EJK64149.1 (hypothetical protein THAOC_15145, partial [Thalassiosira oceanica])

HSP 1 Score: 196.4 bits (498), Expect = 1.100e-46
Identity = 98/226 (43.36%), Postives = 138/226 (61.06%), Query Frame = 0
Query:   54 LPDNFYAETLLDKVALALFRRLVQQQIGFVSTK-PGYDGLIEEARHF---QLQPGVT----AEDQQRMVKSCLTTIAGPLVPPIYRTFMA----------------PWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAALQQQK 256
            L D  ++E+ LDK+ L++FR  V +  G V++  PG  GL+ + R +   +L  GVT    +++Q  MVK  L  +  P++PP YR FM+                PWF+AP+LT I TP FF FLVGP++ + R DG  GG+  E+C+FL+E+ CKGLCLH CK+P Q FF+E LGLD+ + PN+ T EC+ SFG  P   +ED S P GCL GC +  A+  +K
Sbjct:  267 LEDMKFSESPLDKILLSIFRSQVTENTGGVTSDIPGIKGLLAQGREYMTKELPEGVTYAEHSKEQNTMVKKTLAALMTPVLPPFYRIFMSGIVPKLGTEWDGKQIGPWFYAPWLTTIVTPIFFGFLVGPSRPNRRSDGQRGGLVVEKCKFLQESGCKGLCLHQCKIPAQDFFREELGLDLTVKPNFVTQECQWSFGEKPLTPDEDPSFPNGCLVGCESRKAMADRK 492          
BLAST of NO04G01980 vs. NCBI_GenBank
Match: GAX13246.1 (hypothetical protein FisN_17Hh183 [Fistulifera solaris])

HSP 1 Score: 176.8 bits (447), Expect = 9.000e-41
Identity = 82/164 (50.00%), Postives = 108/164 (65.85%), Query Frame = 0
Query:  106 TAEDQQRMVKSCLTTIAGPLVPPIYRTFMA----------------PWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAALQQ 254
            TAE Q  MVKS L  +  P++PP YR FM+                PWF+AP+LT+  TPTFF FLVGP++ ++R DG  GG+  E+C+FL+E+ CKGLCLH CK+P Q+FF++ LGL + +SPN+ T EC+ SFG  P PV ED + P GCL GC +  AL Q
Sbjct:  246 TAEAQHTMVKSTLGNLMTPVLPPFYRIFMSGFVPKLGTDMDGKQLGPWFYAPWLTSFVTPTFFGFLVGPSRPNLRKDGQLGGLIVEKCKFLQESGCKGLCLHQCKIPAQEFFQQELGLPLTVSPNFVTQECQWSFGETPLPVNEDPTFPAGCLAGCKSRDALVQ 409          
The following BLAST results are available for this feature:
BLAST of NO04G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28615.16.700e-11376.86protein of unknown function DUF4033 [Nannochlorops... [more]
CBJ33737.12.300e-7664.19conserved unknown protein [Ectocarpus siliculosus][more]
CBJ33899.12.100e-7464.39conserved unknown protein [Ectocarpus siliculosus][more]
CEL96006.11.100e-5749.12unnamed protein product [Vitrella brassicaformis C... [more]
GAX11909.11.200e-5348.85hypothetical protein FisN_17Lh183 [Fistulifera sol... [more]
XP_005828489.11.500e-5146.61hypothetical protein GUITHDRAFT_164374 [Guillardia... [more]
XP_002180091.11.100e-4947.85predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002295256.16.800e-4946.82predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK64149.11.100e-4643.36hypothetical protein THAOC_15145, partial [Thalass... [more]
GAX13246.19.000e-4150.00hypothetical protein FisN_17Hh183 [Fistulifera sol... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009605NSK009605Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01980.1NO04G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578670gene_1988Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g88gene1984Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01980.1NO04G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01980 ID=NO04G01980|Name=NO04G01980|organism=Nannochloropsis oceanica|type=gene|length=798bp
ATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCTAGC
TTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCACCT
CCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCACCC
CGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAAGGT
GGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTGTCT
CCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTCCAG
CTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTCCTG
CCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACATTTA
TGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCAACT
TTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGATGG
GGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAACGA
ATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAATTT
TTTAAGGAAACCCTGGGTTTGGATATGGTGATGAGTCCGAATTACGAGAC
ATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGGAGG
ACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCTGCC
CTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATAG
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protein sequence of NO04G01980.1

>NO04G01980.1-protein ID=NO04G01980.1-protein|Name=NO04G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MLGSSRSPLLVPTFVLAFIILTQAFLLPIPDTTSALTFRQAIASSTPAPP
RPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQ
LQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPT
FFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQF
FKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAA
LQQQKLDRVTVCDGK*
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Synonyms
Publications