NO04G01980.1, NO04G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01980.1
Unique NameNO04G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr4:579034..579831 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:579034..579831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01980.1 vs.
Match: EWM28615.1 (protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 416.4 bits (1069), Expect = 6.700e-113
Identity = 196/255 (76.86%), Postives = 221/255 (86.67%), Query Frame = 0 
Query:   10 LVPTFVLAFIILTQAFLLPIPDTTSALTFRQAIASSTPAP--PRPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQLQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPTFFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAALQQQKLDRVTVC 263
            +V   V+A   +  AFLLP P   +  + R    +S P+P  PRPPLPDNFYAE+LLDKVALALFRRLVQ++IG+VS+KPGYDGLIEEARH+QLQPGVTAEDQQ+MVK+CL TIAGPLVPP+YRTFMAPWFWAPFLTAIFTP FFKFLVGPN+YDVRDDG  GGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDM M+P+Y+TYECRLSFG+ PK VE+D SIPKGCL GC AV ALQ+++LDR TVC
Sbjct:    8 MVAVCVMATSTICAAFLLPSPSPRAITSCRMGAMTSNPSPVQPRPPLPDNFYAESLLDKVALALFRRLVQREIGYVSSKPGYDGLIEEARHYQLQPGVTAEDQQKMVKTCLATIAGPLVPPVYRTFMAPWFWAPFLTAIFTPPFFKFLVGPNRYDVRDDGQAGGVYAERCRFLEETNCKGLCLHMCKLPTQQFFKETLGLDMTMTPDYDTYECRLSFGLAPKAVEDDPSIPKGCLTGCSAVTALQEKRLDRGTVC 262
The following BLAST results are available for this feature:
BLAST of NO04G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28615.16.700e-11376.86protein of unknown function DUF4033 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01980NO04G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01980.1NO04G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01980.1.cds1NO04G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01980.1 ID=NO04G01980.1|Name=NO04G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCTAGC
TTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCACCT
CCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCACCC
CGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAAGGT
GGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTGTCT
CCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTCCAG
CTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTCCTG
CCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACATTTA
TGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCAACT
TTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGATGG
GGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAACGA
ATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAATTT
TTTAAGGAAACCCTGGGTTTGGATATGGTGATGAGTCCGAATTACGAGAC
ATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGGAGG
ACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCTGCC
CTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATAG
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protein sequence of NO04G01980.1

>NO04G01980.1-protein ID=NO04G01980.1-protein|Name=NO04G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MLGSSRSPLLVPTFVLAFIILTQAFLLPIPDTTSALTFRQAIASSTPAPP
RPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQ
LQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPT
FFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQF
FKETLGLDMVMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAA
LQQQKLDRVTVCDGK*
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mRNA from alignment at chr4:579034..579831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01980.1 ID=NO04G01980.1|Name=NO04G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp|location=Sequence derived from alignment at chr4:579034..579831- (Nannochloropsis oceanica)
ATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCTAGC
TTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCACCT
CCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCACCC
CGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAAGGT
GGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTGTCT
CCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTCCAG
CTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTCCTG
CCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACATTTA
TGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCAACT
TTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGATGG
GGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAACGA
ATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAATTT
TTTAAGGAAACCCTGGGTTTGGATATGGTGATGAGTCCGAATTACGAGAC
ATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGGAGG
ACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCTGCC
CTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATAG
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Coding sequence (CDS) from alignment at chr4:579034..579831-

>NO04G01980.1 ID=NO04G01980.1|Name=NO04G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr4:579034..579831- (Nannochloropsis oceanica)
ATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCTAGC
TTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCACCT
CCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCACCC
CGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAAGGT
GGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTGTCT
CCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTCCAG
CTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTCCTG
CCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACATTTA
TGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCAACT
TTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGATGG
GGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAACGA
ATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAATTT
TTTAAGGAAACCCTGGGTTTGGATATGGTGATGAGTCCGAATTACGAGAC
ATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGGAGG
ACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCTGCC
CTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATAG
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Synonyms
Publications