NO04G01970, NO04G01970 (gene) Nannochloropsis oceanica

Overview
NameNO04G01970
Unique NameNO04G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length525
Alignment locationchr4:577979..578503 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:577979..578503 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR011332Ribosomal_zn-bd
IPR001975Ribosomal_L40e
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: EWM28590.1 (ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 259.2 bits (661), Expect = 9.000e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 
Query:   47 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: CEL98446.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 239.6 bits (610), Expect = 7.400e-60
Identity = 119/129 (92.25%), Postives = 122/129 (94.57%), Query Frame = 0 
Query:   46 KMQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            KMQIFVKTLTGKTITLDVEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV +PSLA LA+ +NCEKMICRKCYARLPPRA NCRKKKCGHTN LR KKKLK
Sbjct:   47 KMQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLAVLARKYNCEKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 175
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: XP_002182250.1 (ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP 1055/1] >EEC46151.1 ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 237.3 bits (604), Expect = 3.700e-59
Identity = 117/128 (91.41%), Postives = 121/128 (94.53%), Query Frame = 0 
Query:   47 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            MQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNC+K +CRKCYARLPPRA NCRKKKCGHT+ LR KKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: KPA42370.1 (polymerase i core factor subunit [Fusarium langsethiae])

HSP 1 Score: 236.5 bits (602), Expect = 6.300e-59
Identity = 117/138 (84.78%), Postives = 124/138 (89.86%), Query Frame = 0 
Query:   37 TTRPSHHRAKMQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            T+ PS    KMQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNC+KMICRKCYARLPPRA NCRK+KCGHTN LR KKKLK
Sbjct:  533 TSSPSQKSVKMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 670
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: GAX23428.1 (large subunit ribosomal protein L40e [Fistulifera solaris] >GAX12683.1 large subunit ribosomal protein L40e [Fistulifera solaris])

HSP 1 Score: 236.5 bits (602), Expect = 6.300e-59
Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = 0 
Query:   47 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            MQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDP+LA LAK FNC+K +CRKCYARLPPRA NCRKKKCGHT+ LR KKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: OBS28041.1 (hypothetical protein FPOA_01980 [Fusarium poae])

HSP 1 Score: 235.3 bits (599), Expect = 1.400e-58
Identity = 116/138 (84.06%), Postives = 124/138 (89.86%), Query Frame = 0 
Query:   37 TTRPSHHRAKMQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            T+ P+    KMQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNC+KMICRKCYARLPPRA NCRK+KCGHTN LR KKKLK
Sbjct:  521 TSSPAQKSVKMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 658
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: XP_003374576.1 (ubiquitin family protein [Trichinella spiralis] >EFV55861.1 ubiquitin family protein [Trichinella spiralis])

HSP 1 Score: 235.0 bits (598), Expect = 1.800e-58
Identity = 115/133 (86.47%), Postives = 123/133 (92.48%), Query Frame = 0 
Query:   42 HHRAKMQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            H + KMQIFVKTLTGKTITL+VEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL  LA  +NCEKMICRKCYARLPPRA NCRKKKCGH+N+LR KKKLK
Sbjct:   66 HIKRKMQIFVKTLTGKTITLEVEPSDTIQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLASKYNCEKMICRKCYARLPPRATNCRKKKCGHSNNLRPKKKLK 198
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: XP_005708470.1 (ubiquitin [Galdieria sulphuraria] >EME31950.1 ubiquitin [Galdieria sulphuraria])

HSP 1 Score: 235.0 bits (598), Expect = 1.800e-58
Identity = 114/128 (89.06%), Postives = 122/128 (95.31%), Query Frame = 0 
Query:   47 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +P+LAALA+ +NC+KMICRKCYARLP RA NCRKKKCGHTN LR+KKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPTLAALARKYNCDKMICRKCYARLPARAHNCRKKKCGHTNELRVKKKLK 128
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: EJK55830.1 (hypothetical protein THAOC_24391 [Thalassiosira oceanica])

HSP 1 Score: 234.6 bits (597), Expect = 2.400e-58
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0 
Query:   47 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            M IFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNCEK ICRKCYARLPP+A NCRKKKCGH++ LR KKKLK
Sbjct:   57 MAIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKKFNCEKQICRKCYARLPPKATNCRKKKCGHSSQLRPKKKLK 184
[Close]
BLAST of NO04G01970 vs. NCBI_GenBank
Match: XP_018705903.1 (Ubiquitin subgroup [Cordyceps fumosorosea ARSEF 2679] >OAA69033.1 Ubiquitin subgroup [Cordyceps fumosorosea ARSEF 2679])

HSP 1 Score: 234.6 bits (597), Expect = 2.400e-58
Identity = 117/138 (84.78%), Postives = 123/138 (89.13%), Query Frame = 0 
Query:   37 TTRPSHHRAKMQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            T+  S    KMQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNCEKMICRKCYARLPPRA NCRK+KCGHTN LR KKKLK
Sbjct:  497 TSSESQKSVKMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCEKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 634
The following BLAST results are available for this feature:
BLAST of NO04G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28590.19.000e-66100.00ubiquitin [Nannochloropsis gaditana][more]
CEL98446.17.400e-6092.25unnamed protein product [Vitrella brassicaformis C... [more]
XP_002182250.13.700e-5991.41ubiquitin extension protein 1/2 [Phaeodactylum tri... [more]
KPA42370.16.300e-5984.78polymerase i core factor subunit [Fusarium langset... [more]
GAX23428.16.300e-5990.63large subunit ribosomal protein L40e [Fistulifera ... [more]
OBS28041.11.400e-5884.06hypothetical protein FPOA_01980 [Fusarium poae][more]
XP_003374576.11.800e-5886.47ubiquitin family protein [Trichinella spiralis] >E... [more]
XP_005708470.11.800e-5889.06ubiquitin [Galdieria sulphuraria] >EME31950.1 ubiq... [more]
EJK55830.12.400e-5890.63hypothetical protein THAOC_24391 [Thalassiosira oc... [more]
XP_018705903.12.400e-5884.78Ubiquitin subgroup [Cordyceps fumosorosea ARSEF 26... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009606NSK009606Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01970.1NO04G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|515654gene_1987Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g87gene1985Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01970.1NO04G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01970 ID=NO04G01970|Name=NO04G01970|organism=Nannochloropsis oceanica|type=gene|length=525bp
ATGGGGACGGGTAGGGCGGGGCGTGGGGCACGCGGCAGCATGCTTCTCCA
GGCCGTCCGTTCATCGCTCATCATCACTTCTTCCTCCTTGTCTCATGCAT
CCTCCTCTACCACTCGACCCTCCCACCACAGAGCGAAGATGCAAATCTTC
GTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCCAGCGA
CACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTC
CGGATCAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGT
ACGCTGTCAGACTATAACATCCAGAAGGAGTCTACCCTGCATTTGGTGTT
GCGTCTGCGTGGTGGCGTCTATGACCCTTCCCTCGCTGCTTTGGCCAAGA
CATTCAACTGCGAGAAAATGATCTGCCGCAAGTGCTACGCGCGCTTGCCG
CCCCGTGCCAAGAACTGCCGGAAGAAGAAGTGCGGGCATACAAACCACCT
CCGCATCAAGAAGAAGCTCAAGTAA
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protein sequence of NO04G01970.1

>NO04G01970.1-protein ID=NO04G01970.1-protein|Name=NO04G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MGTGRAGRGARGSMLLQAVRSSLIITSSSLSHASSSTTRPSHHRAKMQIF
VKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGR
TLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLP
PRAKNCRKKKCGHTNHLRIKKKLK*
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Synonyms
Publications