NO04G01970.1, NO04G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01970.1
Unique NameNO04G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length525
Alignment locationchr4:577979..578503 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:577979..578503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01970.1 vs.
Match: EWM28590.1 (ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 259.2 bits (661), Expect = 9.000e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 
Query:   47 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 175
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
The following BLAST results are available for this feature:
BLAST of NO04G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28590.19.000e-66100.00ubiquitin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01970NO04G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01970.1NO04G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01970.1.cds1NO04G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01970.1 ID=NO04G01970.1|Name=NO04G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=525bp
ATGGGGACGGGTAGGGCGGGGCGTGGGGCACGCGGCAGCATGCTTCTCCA
GGCCGTCCGTTCATCGCTCATCATCACTTCTTCCTCCTTGTCTCATGCAT
CCTCCTCTACCACTCGACCCTCCCACCACAGAGCGAAGATGCAAATCTTC
GTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCCAGCGA
CACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTC
CGGATCAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGT
ACGCTGTCAGACTATAACATCCAGAAGGAGTCTACCCTGCATTTGGTGTT
GCGTCTGCGTGGTGGCGTCTATGACCCTTCCCTCGCTGCTTTGGCCAAGA
CATTCAACTGCGAGAAAATGATCTGCCGCAAGTGCTACGCGCGCTTGCCG
CCCCGTGCCAAGAACTGCCGGAAGAAGAAGTGCGGGCATACAAACCACCT
CCGCATCAAGAAGAAGCTCAAGTAA
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protein sequence of NO04G01970.1

>NO04G01970.1-protein ID=NO04G01970.1-protein|Name=NO04G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MGTGRAGRGARGSMLLQAVRSSLIITSSSLSHASSSTTRPSHHRAKMQIF
VKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGR
TLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLP
PRAKNCRKKKCGHTNHLRIKKKLK*
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mRNA from alignment at chr4:577979..578503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01970.1 ID=NO04G01970.1|Name=NO04G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=525bp|location=Sequence derived from alignment at chr4:577979..578503+ (Nannochloropsis oceanica)
ATGGGGACGGGTAGGGCGGGGCGTGGGGCACGCGGCAGCATGCTTCTCCA
GGCCGTCCGTTCATCGCTCATCATCACTTCTTCCTCCTTGTCTCATGCAT
CCTCCTCTACCACTCGACCCTCCCACCACAGAGCGAAGATGCAAATCTTC
GTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCCAGCGA
CACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTC
CGGATCAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGT
ACGCTGTCAGACTATAACATCCAGAAGGAGTCTACCCTGCATTTGGTGTT
GCGTCTGCGTGGTGGCGTCTATGACCCTTCCCTCGCTGCTTTGGCCAAGA
CATTCAACTGCGAGAAAATGATCTGCCGCAAGTGCTACGCGCGCTTGCCG
CCCCGTGCCAAGAACTGCCGGAAGAAGAAGTGCGGGCATACAAACCACCT
CCGCATCAAGAAGAAGCTCAAGTAA
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Coding sequence (CDS) from alignment at chr4:577979..578503+

>NO04G01970.1 ID=NO04G01970.1|Name=NO04G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr4:577979..578503+ (Nannochloropsis oceanica)
ATGGGGACGGGTAGGGCGGGGCGTGGGGCACGCGGCAGCATGCTTCTCCA
GGCCGTCCGTTCATCGCTCATCATCACTTCTTCCTCCTTGTCTCATGCAT
CCTCCTCTACCACTCGACCCTCCCACCACAGAGCGAAGATGCAAATCTTC
GTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCCAGCGA
CACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTC
CGGATCAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGT
ACGCTGTCAGACTATAACATCCAGAAGGAGTCTACCCTGCATTTGGTGTT
GCGTCTGCGTGGTGGCGTCTATGACCCTTCCCTCGCTGCTTTGGCCAAGA
CATTCAACTGCGAGAAAATGATCTGCCGCAAGTGCTACGCGCGCTTGCCG
CCCCGTGCCAAGAACTGCCGGAAGAAGAAGTGCGGGCATACAAACCACCT
CCGCATCAAGAAGAAGCTCAAGTAA
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Synonyms
Publications