NO04G01940, NO04G01940 (gene) Nannochloropsis oceanica

Overview
NameNO04G01940
Unique NameNO04G01940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1011
Alignment locationchr4:570532..571542 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:570532..571542 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO04G01940 vs. NCBI_GenBank
Match: EWM28583.1 (hypothetical protein Naga_100009g82 [Nannochloropsis gaditana])

HSP 1 Score: 186.4 bits (472), Expect = 1.100e-43
Identity = 94/119 (78.99%), Postives = 106/119 (89.08%), Query Frame = 0 
Query:  127 EVDLQERLQQDIARFRKKEVEAKVSDGQLTGFSAFADKAGGILNKVLVADFFVILAFFGWFVTGVFFKSVLSDASVIDKFTDIWMPVIQPALGLLMAGTLGVGALNNVAARTQEANERK 246
            EVDLQERLQQDI RFRKKE E +  +G +TGF++ ADKAG IL KVLVADFFV+LAF GWFVTGV FKS L+DA+VIDKFTDIWMPVIQPALG+LMAGTLGVGALN+VA+RTQE NE+K
Sbjct:  111 EVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSVASRTQEMNEKK 229
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BLAST of NO04G01940 vs. NCBI_GenBank
Match: CBJ25457.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2 bits (173), Expect = 5.100e-9
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 0 
Query:  134 LQQDIARFRKKEVEAKVSDGQLTGFSAFADKAGGILNKVLVADFFVILAFFGWFVTGVFFKSVLSDASVIDKFTDIWMPVIQPALGLLMAGTLGVGALNNVAARTQEANERK 246
            L  DI RFR+ E     + G+     + A  A  I++ ++  DFFV++AF  WF+ GV      S+  ++D+F D W PV+QPALG+LM GT+  G ++ +     + ++ +
Sbjct:  268 LGADIERFRRAENRQPETAGE-----SIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGGSGNDEDDNR 374
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BLAST of NO04G01940 vs. NCBI_GenBank
Match: XP_024382381.1 (uncharacterized protein LOC112285644 [Physcomitrella patens] >PNR49977.1 hypothetical protein PHYPA_011874 [Physcomitrella patens])

HSP 1 Score: 70.5 bits (171), Expect = 8.700e-9
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 0 
Query:  134 LQQDIARFRKK-EVEAKVSDGQLTGFSAFADKAGG------ILNKVLVADFFVILAFFGWFVTGVFFKSVLSDASVIDKFTDIWMPVIQPALGLLMAGTL 227
            L++DIARF+KK ++E ++ +   TG ++ + K  G      ++ KVLVADFF IL    W V G+  KS+L  +++ID +  +W  + QPALG+ MAG +
Sbjct:  109 LEEDIARFQKKRDLEKRIENFNRTGNASESGKPEGDGMVKSLVEKVLVADFFFILFILAWLVAGLGEKSLLQSSTLIDSWLPLWPTLFQPALGVFMAGAI 208
The following BLAST results are available for this feature:
BLAST of NO04G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28583.11.100e-4378.99hypothetical protein Naga_100009g82 [Nannochlorops... [more]
CBJ25457.15.100e-933.93expressed unknown protein [Ectocarpus siliculosus][more]
XP_024382381.18.700e-940.00uncharacterized protein LOC112285644 [Physcomitrel... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009612NSK009612Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01940.1NO04G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01940.1NO04G01940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01940 ID=NO04G01940|Name=NO04G01940|organism=Nannochloropsis oceanica|type=gene|length=1011bp
AGCCTCATGTCGGCCGCCAGAGCTATGTGGTCGCTCGTGCTCTTTCTTGC
TTCCCTATGTGTGGCTCAAGCGTTTTTTCCTGCCCTCCCCCACCCCTCAT
CAAgtaagtgagagatacagaggaggtcaaaaagctcaaccggaagctct
cgaaaaattatgcacatagtagcttacatttccctgcccaaacatgcaaa
gAGCCGCTATCGAATCGGCCACTACTGGCTGCTGCCGCTCGTGCGCGCTC
CGTTTCTTTTGCCGCATTGAAAAATGCGGCCTCGGACGACAACGAAGATG
CTGCCGCTGCGCCTTCCAAAGCAAGCCCCATCAGGAAGCGGAAGCGCAAG
GTGCCCTTGCCCGCCGAGCTCCTGCAAGAAAATGACGATAAGGATAACGA
TGGTGCCGTAGCATCCTCTGCCATCTCTCCCTCCTTGTCTTCACCACCAC
CATCGTCTACCCCGCAGCAGACAGGGGGAAGGGAGGTTGATTTGCAAGAG
CGACTGCAACAGGACATTGCGCGTTTCCGCAAGAAGGAAGTGGAAGCCAA
GGTTAGTGATGGACAATTAACAGGCTTCTCTGCTTTCGCAGACAAGGCCG
GGGGGATCTTGAATAAAGTGCTGGTGGCTGACTTCTTTGTGATTTTGGCC
TTTTTTGGTTGGTTCGTAACCGGGGTGTTTTTCAAGTCTGTGTTGAGCGA
TGCGTCTGTGATTGATAAATTCACGGACATTTGGATGCCTGTCATACAAC
CAGCGTTGGGTCTGCTGATGGCGGGGACGTTAGGGGTAGGAGCTTTAAAC
AATGTTGCGGCGCGGACGCAGGAGGCGAACGAGAGGAAGGGAATGGATGA
GAGGAGAAAGAATGGATAGGAGGGAGGAGAGGGAGAGGACGGAGAGATAA
TGGGAAAACTTGTGTGACTCGTATTACTTGTAATTGCAGTTAAAATTAAA
GGTCTGGACCAAGAAGAAGAAGGCAAGGCTAATGGTGGTCGGTGCCTGGG
CTGAGATGAAA
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protein sequence of NO04G01940.1

>NO04G01940.1-protein ID=NO04G01940.1-protein|Name=NO04G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MSAARAMWSLVLFLASLCVAQAFFPALPHPSSKPLSNRPLLAAAARARSV
SFAALKNAASDDNEDAAAAPSKASPIRKRKRKVPLPAELLQENDDKDNDG
AVASSAISPSLSSPPPSSTPQQTGGREVDLQERLQQDIARFRKKEVEAKV
SDGQLTGFSAFADKAGGILNKVLVADFFVILAFFGWFVTGVFFKSVLSDA
SVIDKFTDIWMPVIQPALGLLMAGTLGVGALNNVAARTQEANERKGMDER
RKNG*
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Synonyms
Publications