NO04G01930, NO04G01930 (gene) Nannochloropsis oceanica

Overview
NameNO04G01930
Unique NameNO04G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3278
Alignment locationchr4:570445..573722 -

Link to JBrowse

Properties
Property NameValue
Description60s acidic ribosomal protein p0
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:570445..573722 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0008150biological_process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001790Ribosomal_L10P
Homology
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: EWM28546.1 (60s acidic ribosomal protein p0 [Nannochloropsis gaditana])

HSP 1 Score: 517.3 bits (1331), Expect = 3.400e-143
Identity = 291/321 (90.65%), Postives = 310/321 (96.57%), Query Frame = 0 
Query:    1 MPVWNRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFASXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGAGNMFGGGDGY 322
            MPVWNRAKKEDYFE+VEELLGSYTKVF+VGVDNVGSKQMQQIR ALRG+ATVLMGKNTRIRKV+N+FL+KNP HPIEQL+ +VGGNVGFVFTNG+LG VRET+E+NRVPAPARVGS APC+VI+PPGPTGCDPGQTSFFQALQIATKITKGQIEIT+ VQILKEGDKVGNSEAILLQKLNILPFTYGLVI+TIYDNGSLFD KVLDLTDADLAAKFAVAVRNVAAISL+LGYPTLASLPHSIANAFKACVA+ VGLEEFSFEKA+PFKAYLKDPSAF  XXXXXXXXXXXXXXXXXXXXXXXXXXXXD+GAGNMF GGDGY
Sbjct:  102 MPVWNRAKKEDYFERVEELLGSYTKVFVVGVDNVGSKQMQQIRQALRGTATVLMGKNTRIRKVMNIFLKKNPGHPIEQLVNYVGGNVGFVFTNGDLGSVRETLEENRVPAPARVGSLAPCNVIVPPGPTGCDPGQTSFFQALQIATKITKGQIEITTAVQILKEGDKVGNSEAILLQKLNILPFTYGLVIQTIYDNGSLFDPKVLDLTDADLAAKFAVAVRNVAAISLQLGYPTLASLPHSIANAFKACVAVVVGLEEFSFEKAEPFKAYLKDPSAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGAGNMF-GGDGY 421
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: XP_008904900.1 (hypothetical protein PPTG_11356 [Phytophthora parasitica INRA-310] >ETI47684.1 hypothetical protein F443_08148 [Phytophthora parasitica P1569] >ETK87619.1 hypothetical protein L915_07975 [Phytophthora parasitica] >ETL41017.1 hypothetical protein L916_07899 [Phytophthora parasitica] >ETL94197.1 hypothetical protein L917_07795 [Phytophthora parasitica] >ETM47425.1 hypothetical protein L914_07863 [Phytophthora parasitica] >ETN09754.1 hypothetical protein PPTG_11356 [Phytophthora parasitica INRA-310] >ETO76399.1 hypothetical protein F444_08202 [Phytophthora parasitica P1976] >ETP17487.1 hypothetical protein F441_08122 [Phytophthora parasitica CJ01A1] >ETP45519.1 hypothetical protein F442_08087 [Phytophthora parasitica P10297] >KUF77228.1 60S acidic ribosomal protein P0 [Phytophthora nicotianae])

HSP 1 Score: 386.3 bits (991), Expect = 9.000e-104
Identity = 191/274 (69.71%), Postives = 229/274 (83.58%), Query Frame = 0 
Query:    5 NRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            ++ +K +YFEK+E LL +YTK+F+VGVDNVGS QMQQIR  LRG A VLMGKNT +RKV + F++KNP HP+EQ +  + GNVGFVFTN +L  +RE +E NRVPAPARVGS AP DVI+PPGPTG DPGQTSFFQALQIATKI KGQIEI ++V + ++G+KVGNSEA LLQKL+I PF+YGLVI+ +YDNGS+FD  VLDLT+ADL AKF   +RNVAA+SL+LG PTLAS+PHSIANAFK  VAI V  EEFSFEKA+P+KA+L DPSAFA
Sbjct:    4 SQERKLEYFEKLESLLENYTKIFLVGVDNVGSAQMQQIRLVLRGRAEVLMGKNTLMRKVFHNFVKKNPGHPLEQFIPLLKGNVGFVFTNDDLAEIREVLESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVTEVLLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGIPTLASIPHSIANAFKDLVAIAVECEEFSFEKAEPYKAFLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: KUF99358.1 (hypothetical protein AM588_10011112 [Phytophthora nicotianae])

HSP 1 Score: 386.3 bits (991), Expect = 9.000e-104
Identity = 191/274 (69.71%), Postives = 229/274 (83.58%), Query Frame = 0 
Query:    5 NRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            ++ +K +YFEK+E LL +YTK+F+VGVDNVGS QMQQIR  LRG A VLMGKNT +RKV + F++KNP HP+EQ +  + GNVGFVFTN +L  +RE +E NRVPAPARVGS AP DVI+PPGPTG DPGQTSFFQALQIATKI KGQIEI ++V + ++G+KVGNSEA LLQKL+I PF+YGLVI+ +YDNGS+FD  VLDLT+ADL AKF   +RNVAA+SL+LG PTLAS+PHSIANAFK  VAI V  EEFSFEKA+P+KA+L DPSAFA
Sbjct:    4 SQERKLEYFEKLESLLENYTKIFLVGVDNVGSAQMQQIRLVLRGRAEVLMGKNTLMRKVFHNFVKKNPGHPLEQFIPLLKGNVGFVFTNDDLAEIREVLESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVTEVLLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGIPTLASIPHSIANAFKDLVAIAVECEEFSFEKAEPYKAFLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: OWZ13886.1 (60S acidic ribosomal protein P0, partial [Phytophthora megakarya])

HSP 1 Score: 385.6 bits (989), Expect = 1.500e-103
Identity = 191/274 (69.71%), Postives = 226/274 (82.48%), Query Frame = 0 
Query:    5 NRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            ++ +K +YFEK+E LL +YTK+F+VGVDNVGS QMQQIR  LRG   VLMGKNT +RKV + F++KNP HP+E  +  + GNVGFVFTN +L  +RE +E NRVPAPARVGS AP DVI+PPGPTG DPGQTSFFQALQIATKI KGQIEI ++V + K+GDKVGNSEA LLQKL+I PF+YGLVI+ +YDNGS+FD  VLDLT+ADL AKF   +RNVAA+SL LG PTLAS+PHSIANAFK  VAI V  E+FSFEKADP+KA+L DPSAFA
Sbjct:    4 SQERKLEYFEKLESLLENYTKIFLVGVDNVGSAQMQQIRLVLRGRGEVLMGKNTLMRKVFHNFIKKNPGHPLENFIPLLKGNVGFVFTNDDLTEIREVLESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVTEVLLTKKGDKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAVSLALGLPTLASIPHSIANAFKDLVAIAVECEDFSFEKADPYKAFLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: GAX98274.1 (60S acidic ribosomal protein P0 putative [Pythium insidiosum])

HSP 1 Score: 385.6 bits (989), Expect = 1.500e-103
Identity = 183/271 (67.53%), Postives = 225/271 (83.03%), Query Frame = 0 
Query:    8 KKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            +K+DYF K+E+LL ++TK+F+V VDNVGS Q+QQ+R ALRG A VLMGKNT +RKV + FL KNP HP+E ++  + GN+GFVFTN +L  VRE +E N+VPAPARVG+ AP DV+IP GPTGCDPGQTSFFQALQ+ATKI +GQIEI SD  + K G+KVGNSEA+LLQKLNI PF+YG+VI ++Y+NGS+FD KVLDLT+ DL AKF   +RNVAA+SL++G+PTLAS+PHS+ANAFK  VA+ V  E FSF KADPFKAYL DPSAFA
Sbjct:    7 RKQDYFNKLEQLLENFTKIFLVSVDNVGSNQLQQVRIALRGKAEVLMGKNTLMRKVFHNFLEKNPGHPLENMIPLIKGNIGFVFTNADLNEVREVIESNKVPAPARVGAIAPVDVVIPAGPTGCDPGQTSFFQALQVATKIQRGQIEIVSDQLLTKAGEKVGNSEAVLLQKLNIRPFSYGVVITSVYENGSIFDPKVLDLTEEDLCAKFVTGLRNVAAVSLEIGFPTLASIPHSVANAFKTLVAVAVECETFSFAKADPFKAYLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: XP_009513921.1 (hypothetical protein PHYSODRAFT_353332 [Phytophthora sojae] >EGZ26646.1 hypothetical protein PHYSODRAFT_353332 [Phytophthora sojae])

HSP 1 Score: 385.2 bits (988), Expect = 2.000e-103
Identity = 190/274 (69.34%), Postives = 229/274 (83.58%), Query Frame = 0 
Query:    5 NRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            ++ +K +YFEK+E LL +YT++F+VGVDNVGS QMQQIR  LRG A VLMGKNT +RKV + F++KNP HP+EQ +  + GNVGFVFTN +L  +RE +E NRVPAPARVGS AP DVI+PPGPTG DPGQTSFFQALQIATKI KGQIEI ++V + ++G+KVGNSEA LLQKL+I PF+YGLVI+ +YDNGS+FD  VLDLT+ADL AKF   +RNVAA+SL+LG PTLAS+PHSIANAFK  VA+ V  EEFSFEKA+PFKA+L DPSAFA
Sbjct:    4 SQERKLEYFEKLEALLENYTRIFLVGVDNVGSAQMQQIRLVLRGRAEVLMGKNTLMRKVFHNFVKKNPGHPLEQFIPLLKGNVGFVFTNDDLAEIREILESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVTEVLLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGLPTLASIPHSIANAFKDLVAVAVECEEFSFEKAEPFKAFLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: XP_002896775.1 (60S acidic ribosomal protein P0 [Phytophthora infestans T30-4] >EEY66710.1 60S acidic ribosomal protein P0 [Phytophthora infestans T30-4])

HSP 1 Score: 385.2 bits (988), Expect = 2.000e-103
Identity = 190/274 (69.34%), Postives = 228/274 (83.21%), Query Frame = 0 
Query:    5 NRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            ++ +K +YF+K+E LL +YTK+F+VGVDNVGS QMQQIR  LRG A VLMGKNT +RKV N F++KNP HP+E  +  + GNVGFVFTN +L  +RE +E NRVPAPARVGS AP DVI+PPGPTG DPGQTSFFQALQIATKI KGQIEI ++V + ++G+KVGNSEA LLQKL+I PF+YGLVI+ +YDNGS+FD  VLDLT+ADL AKF   +RNVAA+SL+LG PTLAS+PHSIANAFK  VAI V  EEFSFEKA+P+KA+L DPSAFA
Sbjct:    4 SQERKLEYFDKLESLLENYTKIFLVGVDNVGSAQMQQIRLVLRGRAEVLMGKNTLMRKVFNNFVKKNPGHPLELFIPLLKGNVGFVFTNDDLSEIREVLESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVTEVMLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGIPTLASIPHSIANAFKDLVAIAVECEEFSFEKAEPYKAFLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: XP_024584599.1 (60s acidic ribosomal protein p0 [Plasmopara halstedii] >CEG48230.1 60s acidic ribosomal protein p0 [Plasmopara halstedii])

HSP 1 Score: 383.3 bits (983), Expect = 7.600e-103
Identity = 191/274 (69.71%), Postives = 225/274 (82.12%), Query Frame = 0 
Query:    5 NRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            ++ +K +YF K+E LL  YTK+F+VGVDNVGS QMQQIR  LRG   VLMGKNT +RKV N F++KNP HP+E  +  + GNVGFVFTN +L  +RE +E NRVPAPARVGS AP DVI+PPGPTG DPGQTSFFQALQIATKI KGQIEI S+V + ++G+KVGNSEA LLQKL+I PF+YGLVI+ +YDNGS+FD  VLDLT+ADL AKFA  +RNVAA+SL+LG PTLAS+PHSIANAFK  VAI V  E FSFEKA+P+KAYL DPSAFA
Sbjct:    4 SQERKLEYFAKLENLLEKYTKIFLVGVDNVGSAQMQQIRLVLRGRGEVLMGKNTLMRKVFNNFVKKNPGHPLELFIPLLKGNVGFVFTNDDLSEIREILESNRVPAPARVGSIAPVDVIVPPGPTGADPGQTSFFQALQIATKIQKGQIEIVSEVLLTRKGEKVGNSEAALLQKLDIKPFSYGLVIEQVYDNGSIFDPAVLDLTEADLCAKFAAGLRNVAAMSLELGIPTLASIPHSIANAFKDLVAIAVECESFSFEKAEPYKAYLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: CCA22079.1 (60S acidic ribosomal protein P0 putative [Albugo laibachii Nc14])

HSP 1 Score: 380.6 bits (976), Expect = 4.900e-102
Identity = 183/271 (67.53%), Postives = 226/271 (83.39%), Query Frame = 0 
Query:    8 KKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAFA 279
            +K++YF ++E LL ++TK+F+V VDNV SKQMQQIR +LRG A +LMGKNT +RKV   FLRKNP+HP+E ++  + GN+GFVFTN +L  +R  +E NRVPAPARVG+ AP DV++PPG TGCDPGQTSFFQALQIATKI KGQIEI S+V ++KEG+KVGNSEA LLQKLNI PF+YGLV+ ++YDNGS+FD  VLDLT+ DL AKF   +RNVAA+SL++G PTLAS+PHSIANAFK+ VA+ V  E +SFEKA+PFKAYL DPSAFA
Sbjct:    7 RKQEYFVRLESLLETFTKIFLVSVDNVRSKQMQQIRQSLRGRAEILMGKNTLMRKVFGNFLRKNPNHPLEMVVPLIRGNIGFVFTNDDLNDIRSVLESNRVPAPARVGAVAPADVVVPPGSTGCDPGQTSFFQALQIATKIQKGQIEIVSEVLLIKEGEKVGNSEAALLQKLNINPFSYGLVLVSVYDNGSVFDPAVLDLTEEDLFAKFIAGLRNVAAVSLEIGIPTLASIPHSIANAFKSLVAVAVECETYSFEKAEPFKAYLADPSAFA 277
[Close]
BLAST of NO04G01930 vs. NCBI_GenBank
Match: CCI41647.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 379.0 bits (972), Expect = 1.400e-101
Identity = 182/270 (67.41%), Postives = 226/270 (83.70%), Query Frame = 0 
Query:    8 KKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSATVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVRETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITKGQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLFDAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACVAITVGLEEFSFEKADPFKAYLKDPSAF 278
            +K++YF ++E LL ++TK+F+V VDNV SKQMQQIR +LRG A +LMGKNT +RKV   FLRKNP+HP+E ++  + GN+GFVFTN +L  +R  +E NRVPAPARVG+ AP DV+IPPG TGCDPGQTSFFQALQIATKI KGQIEI S+V ++KEGDKVGNSEA+LLQKL+I PF+YGLV+ ++YDNGS+FD  VLDLT+ DL AKF   +RNVAA+SL++G PTLAS+PHSIANAFK+ VA+ V  E +SF+KA+PFKAYL DPSAF
Sbjct:    7 RKQEYFVRLESLLETFTKIFLVSVDNVRSKQMQQIRQSLRGRAEILMGKNTLMRKVFANFLRKNPNHPLEMVVPLIRGNIGFVFTNDDLNDIRAVLESNRVPAPARVGAIAPADVVIPPGSTGCDPGQTSFFQALQIATKIQKGQIEIVSEVLLIKEGDKVGNSEAVLLQKLSINPFSYGLVLVSVYDNGSVFDPAVLDLTEEDLCAKFVAGLRNVAAVSLEIGIPTLASIPHSIANAFKSLVAVAVECETYSFDKAEPFKAYLADPSAF 276
The following BLAST results are available for this feature:
BLAST of NO04G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28546.13.400e-14390.6560s acidic ribosomal protein p0 [Nannochloropsis g... [more]
XP_008904900.19.000e-10469.71hypothetical protein PPTG_11356 [Phytophthora para... [more]
KUF99358.19.000e-10469.71hypothetical protein AM588_10011112 [Phytophthora ... [more]
OWZ13886.11.500e-10369.7160S acidic ribosomal protein P0, partial [Phytopht... [more]
GAX98274.11.500e-10367.5360S acidic ribosomal protein P0 putative [Pythium ... [more]
XP_009513921.12.000e-10369.34hypothetical protein PHYSODRAFT_353332 [Phytophtho... [more]
XP_002896775.12.000e-10369.3460S acidic ribosomal protein P0 [Phytophthora infe... [more]
XP_024584599.17.600e-10369.7160s acidic ribosomal protein p0 [Plasmopara halste... [more]
CCA22079.14.900e-10267.5360S acidic ribosomal protein P0 putative [Albugo l... [more]
CCI41647.11.400e-10167.41unnamed protein product [Albugo candida][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01930.1NO04G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578652gene_1984Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g84gene1988Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01930.1NO04G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01930 ID=NO04G01930|Name=NO04G01930|organism=Nannochloropsis oceanica|type=gene|length=3278bp
CACACGGAGGCCTCACGCGGCAGCCGTCTCTCTCTTCCCATGGCTGGCCA
TCCTCCTCCTTCCATCTCTCTACCCCTCTCTTCTTCTCCATTTACTCATG
GTCTCTTTGGAGGTTGTTCTTGTAGGGATAGGGAACATTTGGAATGTCTA
CGAGATTCTCTGCGGTGGCTTGGACAAGGCGGCTTCTGTTATGCACTCTC
TCTGCCTACCTTTCCGAGCCCTCCCCTCCCTTCTTCCTATATTCTTATCA
TGCAAGCCCTTTCATGCCTATCTCAAACCACCCCCACGTACCAATCCACA
CTACACAGACCACAGCGTCACCGGCAGCTGGTTAAATAGGGTTTGAGTCA
CTAACAGAACTCATTCCTCCAGCTACGGCTTCATCGTCTTCGCGACCACC
TCTACAAGAAACTACTTCAGgtgaggaccgtgtgtgacgaggtgccttca
cttggagcaagggacaacaggcacaatttgtatgtttggtttcgattgtc
atggtagcagtaacagcagggatggagagaggatgcggcggttccccgtc
ccgtgtcgcttactttccagctcgagcaccccaaaagcacgatggctccc
cccccccccttcaatgtactctagtcttcccctgtctggagcgctggtgc
atgaattgtctcagcttccaataaatttatcgtttggcttatttgatatt
tcctcttaacgcaaatccatccatccccgtccttgctccccccctcgccc
cccccccccccccccgaacagTCACCCCCTAATCAACCATGCCCGTCTGG
AACCGCGCCAAGAAGGAGGATTACTTCGAAAAGGTCGAAGAGCTCCTGGG
TTCCTACACCAAGGTCTTCATCGTCGGGGTCGACAATGTCGGCTCCAAGC
AGATGCAGCAGATTCGCCATGCCCTCCGCGGCAGCGCCACCGTCCTCATG
GGGAAGAACACGCGCATCCGGAAGGTCATCAACATGTTCCTCCGCAAAAA
CCCCGACCACCCTATCGAGCAGCTCCTTCAGTTCGTTGGCGGCAACGTCG
GCTTTGTCTTCACCAACGGCGAGCTCGGCCTGGTGCGTGAGACCGTGGAG
AAGAACCGGGTGCCAGCCCCTGCCCGTGTCGGGTCAACTGCCCCCTGTGA
TGTGATCATCCCCCCCGGCCCCACCGGCTGCGACCCCGGCCAGACCTCTT
TTTTCCAGGCCTTGCAAATCGCCACCAAGATTACCAAGGGGCAGATTGAG
ATAACCAGCGACGTGCAGATCCTGAAGGAAGGTGACAAGGTCGGCAATTC
CGAAGCCATCCTACTCCAGAAACTGAATATTCTCCCCTTCACTTACGGAC
TGGTCATCAAGACCATCTACGACAACGGCTCCCTCTTCGACGCCAAGGTC
CTGGATCTCACCGATGCTGACTTGGCCGCTAAGTTCGCCGTGGCCGTGCG
TAATGTAGCCGCTATCTCGCTCAAGCTTGGGTATCCTACCCTTGCCTCCC
TCCCTCATTCCATCGCCAATGCCTTCAAGGCTTGCGTTGCCATCACGGTG
GGCCTCGAGGAGTTCTCTTTCGAGAAGGCGGATCCGTTTAAGGCCTACTT
GAAGGACCCCTCCGCCTTCGCCTCTGCCGGAGGTGGTGGAGAGGCGGCCG
CTGCCGCTCCTGCAGGGGATGCCAAGCCGGCGAAGGAGGAGAAGGAAGAG
GAAGAGGCTGACCTTGGGGCTGGCAACATGTTCGGTGGAGGTGATGGATA
TTAAGGAGCGATGTGGGCCTTGTCTGATGCGTCGGAATTCTTGTTCTTCC
CGTCCCTCCCTTCTCCTTCTCTTTTTTTCGTCTTGTAACTGGCAATTGCT
TTTGGGAGGCAGGAAAGAGAGGGAAAGGTGGAGGGGGGACGCAGTAGGGT
AAAGATTGCAAGACACCGATGGTGCGCACTGTCCGCTGGCCCTACGGGAT
CCACTTGTTTCCGTGGAAAGGAGGTCGCAGGAAAGAGGAGAAAGAGGGAG
AGACTAAAAAAATGGAAGAAAAGTTGTGGTGGAAGTGAGACGGAGGGGTA
GGTTATAAATAACGGTGAGCCATAGCACAGCACACTTGATATTTGGGCCT
TTCTCGCTGGTGTGTCCTAACCAACGAAAGACAAGAAAGAAGAGAAGAAG
AAAAAGAGTAGAAGAAAAGGAAAATCGTTTTTTCATCTCAGCCCAGGCAC
CGACCACCATTAGCCTTGCCTTCTTCTTCTTGGTCCAGACCTTTAATTTT
AACTGCAATTACAAGTAATACGAGTCACACAAGTTTTCCCATTATCTCTC
CGTCCTCTCCCTCTCCTCCCTCCTATCCATTCTTTCTCCTCTCATCCATT
CCCTTCCTCTCGTTCGCCTCCTGCGTCCGCGCCGCAACATTGTTTAAAGC
TCCTACCCCTAACGTCCCCGCCATCAGCAGACCCAACGCTGGTTGTATGA
CAGGCATCCAAATGTCCGTGAATTTATCAATCACAGACGCATCGCTCAAC
ACAGACTTGAAAAACACCCCGGTTACGAACCAACCAAAAAAGGCCAAAAT
CACAAAGAAGTCAGCCACCAGCACTTTATTCAAGATCCCCCCGGCCTTGT
CTGCGAAAGCAGAGAAGCCTGTTAATTGTCCATCACTAACCTTGGCTTCC
ACTTCCTTCTTGCGGAAACGCGCAATGTCCTGTTGCAGTCGCTCTTGCAA
ATCAACCTCCCTTCCCCCTGTCTGCTGCGGGGTAGACGATGGTGGTGGTG
AAGACAAGGAGGGAGAGATGGCAGAGGATGCTACGGCACCATCGTTATCC
TTATCGTCATTTTCTTGCAGGAGCTCGGCGGGCAAGGGCACCTTGCGCTT
CCGCTTCCTGATGGGGCTTGCTTTGGAAGGCGCAGCGGCAGCATCTTCGT
TGTCGTCCGAGGCCGCATTTTTCAATGCGGCAAAAGAAACGGAGCGCGCA
CGAGCGGCAGCAGCCAGTAGTGGCCGATTCGATAGCGGCTCTTTGCATGT
TTGGGCAGGGAAATGTAAGCTACTATGTGCATAATTTTTCGAGAGCTTCC
GGTTGAGCTTTTTGACCTCCTCTGTATCTCTCACTTACTTGATGAGGGGT
GGGGGAGGGCAGGAAAAAACGCTTGAGCCACACATAGGGAAGCAAGAAAG
AGCACGAGCGACCACATAGCTCTGGCGGCCGACATGAGGCTATGATGGTA
GTGTGGATGGACATGGCGTGGGGAAATGGGTTACAACAGCAATCAAGAAA
GCACGAGAGCAGGAGCAACAAGACTCGG
back to top

protein sequence of NO04G01930.1

>NO04G01930.1-protein ID=NO04G01930.1-protein|Name=NO04G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPVWNRAKKEDYFEKVEELLGSYTKVFIVGVDNVGSKQMQQIRHALRGSA
TVLMGKNTRIRKVINMFLRKNPDHPIEQLLQFVGGNVGFVFTNGELGLVR
ETVEKNRVPAPARVGSTAPCDVIIPPGPTGCDPGQTSFFQALQIATKITK
GQIEITSDVQILKEGDKVGNSEAILLQKLNILPFTYGLVIKTIYDNGSLF
DAKVLDLTDADLAAKFAVAVRNVAAISLKLGYPTLASLPHSIANAFKACV
AITVGLEEFSFEKADPFKAYLKDPSAFASAGGGGEAAAAAPAGDAKPAKE
EKEEEEADLGAGNMFGGGDGY*
back to top
Synonyms
Publications